View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8950_low_49 (Length: 382)
Name: NF8950_low_49
Description: NF8950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8950_low_49 |
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Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 23 - 367
Target Start/End: Original strand, 5475849 - 5476179
Alignment:
| Q |
23 |
gtgcatgttaagtaaaaagaagagatttctaatatatggaagtggtgaaaaccctagggcatttagggtctaaaatgaat-tttaatcttaatatttgca |
121 |
Q |
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| T |
5475849 |
gtgcatgttaagtaaaaagaagagatttctaatatagggaaatggtgaaaaccctactgcatttagggtctaaaatgaatgtttaatcttaatatttgca |
5475948 |
T |
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| Q |
122 |
taattgatatggtgtctgtttggattaacttatttgaagttgaaggggaaaaacctagttttttataacttagttttttataactatttccataaaaact |
221 |
Q |
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| T |
5475949 |
taattgatatgatgtctgtttggattaacttatttgaagttgaaggggaaaaac---------------ttagttttttataactatttccataaaaact |
5476033 |
T |
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| Q |
222 |
gtgaaaatactatgactttgttttatcctttgttatataatacttgtattagtagtgcttatgctataaatgtcaaattaattatttatccaatcggaaa |
321 |
Q |
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| T |
5476034 |
ctgaaaatactatgactttgttttatcctttgttatataatacttatattagtagtgcttatgctatatatgtctaattgattatttatccaatcggaaa |
5476133 |
T |
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| Q |
322 |
ctttgtaggggactgatgaaacagaggcgggaaataggattagtga |
367 |
Q |
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| T |
5476134 |
ctttgtaggggactgatgaaacagaggcaggaaataggattagtga |
5476179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 223 - 348
Target Start/End: Original strand, 8403490 - 8403615
Alignment:
| Q |
223 |
tgaaaatactatgactttgttttatcctttgttatataatacttgtattagtagtgcttatgctataaatgtcaaattaattatttatccaatcggaaac |
322 |
Q |
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| T |
8403490 |
tgaaaatactataaatttattttatcctttgttatacaatacttatattcgtagtgcttatgctataaatgtttaattaattatttatccaatgagaaac |
8403589 |
T |
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| Q |
323 |
tttgtaggggactgatgaaacagagg |
348 |
Q |
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| T |
8403590 |
tttgtagggaactgaagaaacagagg |
8403615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 123 - 193
Target Start/End: Original strand, 8403371 - 8403441
Alignment:
| Q |
123 |
aattgatatggtgtctgtttggattaacttatttgaagttgaaggggaaaaacctagttttttataactta |
193 |
Q |
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| T |
8403371 |
aattgatatggtttctgtttggattaacttatttgaagttgaaggggaaaaacttagttttttataactta |
8403441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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