View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8950_low_50 (Length: 361)

Name: NF8950_low_50
Description: NF8950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8950_low_50
NF8950_low_50
[»] chr1 (6 HSPs)
chr1 (119-361)||(22685572-22685814)
chr1 (115-357)||(21309740-21309982)
chr1 (17-225)||(22085569-22085777)
chr1 (25-360)||(41369420-41369755)
chr1 (41-360)||(22795251-22795573)
chr1 (143-348)||(4567270-4567475)
[»] scaffold0101 (2 HSPs)
scaffold0101 (17-361)||(47026-47370)
scaffold0101 (17-361)||(51664-52008)
[»] chr6 (3 HSPs)
chr6 (11-360)||(23495591-23495940)
chr6 (41-360)||(19026155-19026477)
chr6 (115-206)||(26461542-26461632)
[»] scaffold0304 (1 HSPs)
scaffold0304 (41-360)||(6555-6874)
[»] chr4 (3 HSPs)
chr4 (41-360)||(14557659-14557978)
chr4 (41-339)||(13277996-13278294)
chr4 (41-360)||(14714906-14715228)
[»] chr2 (7 HSPs)
chr2 (11-360)||(22647592-22647941)
chr2 (41-360)||(23612244-23612563)
chr2 (41-228)||(23615900-23616087)
chr2 (84-339)||(23191370-23191625)
chr2 (118-360)||(23617020-23617262)
chr2 (113-216)||(25349992-25350095)
chr2 (299-339)||(25350178-25350218)
[»] scaffold0270 (1 HSPs)
scaffold0270 (41-361)||(15981-16301)
[»] scaffold1701 (1 HSPs)
scaffold1701 (45-360)||(986-1301)
[»] scaffold0023 (2 HSPs)
scaffold0023 (122-361)||(21663-21902)
scaffold0023 (41-361)||(84078-84401)
[»] scaffold0051 (1 HSPs)
scaffold0051 (11-225)||(78966-79180)
[»] scaffold0108 (1 HSPs)
scaffold0108 (41-360)||(43245-43564)
[»] scaffold0323 (1 HSPs)
scaffold0323 (11-225)||(3700-3914)
[»] scaffold0001 (2 HSPs)
scaffold0001 (122-360)||(389130-389368)
scaffold0001 (109-361)||(116176-116428)
[»] scaffold0040 (1 HSPs)
scaffold0040 (41-360)||(40373-40692)
[»] chr8 (2 HSPs)
chr8 (25-360)||(1734344-1734679)
chr8 (41-361)||(22334177-22334499)
[»] chr7 (7 HSPs)
chr7 (45-360)||(14324501-14324816)
chr7 (156-360)||(18160343-18160547)
chr7 (138-206)||(10828767-10828835)
chr7 (138-206)||(11022559-11022627)
chr7 (156-206)||(10863250-10863300)
chr7 (290-354)||(13347506-13347570)
chr7 (143-206)||(13347359-13347422)
[»] chr3 (7 HSPs)
chr3 (41-360)||(10170177-10170496)
chr3 (54-360)||(14683946-14684252)
chr3 (119-357)||(12022395-12022633)
chr3 (45-361)||(7342252-7342568)
chr3 (54-228)||(10791669-10791843)
chr3 (119-360)||(12845530-12845771)
chr3 (290-360)||(10791537-10791607)
[»] scaffold0019 (1 HSPs)
scaffold0019 (122-360)||(152251-152489)
[»] scaffold0046 (1 HSPs)
scaffold0046 (150-357)||(29899-30106)
[»] scaffold0107 (1 HSPs)
scaffold0107 (122-360)||(28194-28432)
[»] scaffold0130 (1 HSPs)
scaffold0130 (115-360)||(30176-30421)
[»] scaffold0239 (1 HSPs)
scaffold0239 (119-357)||(17927-18165)
[»] chr5 (1 HSPs)
chr5 (41-361)||(21529346-21529669)
[»] scaffold0022 (1 HSPs)
scaffold0022 (41-339)||(57558-57856)
[»] scaffold0081 (2 HSPs)
scaffold0081 (114-360)||(45074-45320)
scaffold0081 (41-92)||(45022-45073)
[»] scaffold0241 (1 HSPs)
scaffold0241 (101-361)||(24127-24387)
[»] scaffold0193 (2 HSPs)
scaffold0193 (114-360)||(27589-27835)
scaffold0193 (41-92)||(27537-27588)
[»] scaffold0026 (1 HSPs)
scaffold0026 (25-360)||(119049-119387)
[»] scaffold0013 (2 HSPs)
scaffold0013 (115-357)||(118870-119112)
scaffold0013 (115-357)||(126714-126956)
[»] scaffold0156 (1 HSPs)
scaffold0156 (110-192)||(19154-19236)
[»] scaffold0059 (1 HSPs)
scaffold0059 (115-357)||(71694-71936)
[»] scaffold0100 (2 HSPs)
scaffold0100 (115-206)||(8472-8563)
scaffold0100 (300-354)||(8324-8378)
[»] scaffold0014 (1 HSPs)
scaffold0014 (115-357)||(6350-6592)
[»] scaffold1898 (1 HSPs)
scaffold1898 (127-192)||(425-490)


Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 119 - 361
Target Start/End: Original strand, 22685572 - 22685814
Alignment:
Q  119 tttatggaagaaccagatgtcaaagaagcttaagacaaaatctggaaatcccaggtaatcattccatgccctaactcatcgcatgcatacctaggacctt 218  Q
    |||||||||||  ||||  |||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22685572 tttatggaagagtcagacatcaaggaagctgaagataaaatctggaaatcccaggtaatcattccatgccctaactcatcgcatgcatacctaggacctt 22685671  T
Q  219 tgccggatgatcctaaagacttagaaaaactcaacgctgtttttccttgtagtgagggacaattacacctcattttttcaaaaggtccttacgacctaag 318  Q
    |||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  22685672 tgccggatgatcctgaagacttagaaaaattcaactctgtttttccttgtagtgagggacaattacccctcattttttcaaaaggtccttacgacctaag 22685771  T
Q  319 ttttctgaaatccaagtttaggactgagccaaaaatagaaaat 361  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  22685772 ttttctgaaatccaagtttaggactgagccaaaaatagaaaat 22685814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 115 - 357
Target Start/End: Complemental strand, 21309982 - 21309740
Alignment:
Q  115 tcaatttatggaagaaccagatgtcaaagaagcttaagacaaaatctggaaatcccaggtaatcattccatgccctaactcatcgcatgcatacctagga 214  Q
    ||||||||||||||| |||||| |||| |||||| |||| ||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||     
T  21309982 tcaatttatggaagagccagatatcaaggaagctgaagataaaatctagaaatcctaggtaatcatttcatgccctaactcatcgcatgcatacctaggg 21309883  T
Q  215 cctttgccggatgatcctaaagacttagaaaaactcaacgctgtttttccttgtagtgagggacaattacacctcattttttcaaaaggtccttacgacc 314  Q
    |||||||| ||||||||  ||||||||||||||||||||| |||||| ||||||| ||||||||| ||||  ||||||||||||||||||||||| ||||    
T  21309882 cctttgccagatgatcccgaagacttagaaaaactcaacgttgttttcccttgtaatgagggacagttacctctcattttttcaaaaggtccttatgacc 21309783  T
Q  315 taagttttctgaaatccaagtttaggactgagccaaaaataga 357  Q
    | ||||||||||||||||| |||||||||||||||||||||||    
T  21309782 tgagttttctgaaatccaaatttaggactgagccaaaaataga 21309740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 17 - 225
Target Start/End: Complemental strand, 22085777 - 22085569
Alignment:
Q  17 actgaaagaaaaatttgaatctctatgacgcgcgcataaggttcttcttctcaaccaacgaaacaatatgaaccaagtgccaatcttcccataaatcctc 116  Q
    ||||||| ||||||||||||||| ||||| |||||| ||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  22085777 actgaaacaaaaatttgaatctccatgactcgcgcagaaggttcctcttctcaaccaacgaaacaacatgaaccaagtgccaattttcccataaatcctc 22085678  T
Q  117 aatttatggaagaaccagatgtcaaagaagcttaagacaaaatctggaaatcccaggtaatcattccatgccctaactcatcgcatgcatacctaggacc 216  Q
    | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||| ||    
T  22085677 agtttatggaagaaccagatgtcaaagaagctgaagacaaaatctggaaatcccaggtaatcatctcatgcccaaactcatcgcatgcatacctagggcc 22085578  T
Q  217 tttgccgga 225  Q
    |||||||||    
T  22085577 tttgccgga 22085569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 25 - 360
Target Start/End: Original strand, 41369420 - 41369755
Alignment:
Q  25 aaaaatttgaatctctatgacgcgcgcataaggttcttcttctcaaccaacgaaacaatatgaaccaagtgccaatcttcccataaatcctcaatttatg 124  Q
    |||||||||||||| |||| |||||| | ||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||| |||| ||||||    
T  41369420 aaaaatttgaatctttatggcgcgcgtagaaggttcttcttctcaaccaacgaaacaacatgaaacaaatgccaatcttcccataaatactcagtttatg 41369519  T
Q  125 gaagaaccagatgtcaaagaagcttaagacaaaatctggaaatcccaggtaatcattccatgccctaactcatcgcatgcatacctaggacctttgccgg 224  Q
    ||||||||||| || ||||||||| |||||| ||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||| ||||||||||    
T  41369520 gaagaaccagacgttaaagaagctgaagacagaatctggaaatcccaggtaattattccatgctcaaactcatcgcatgcatacctagggcctttgccgg 41369619  T
Q  225 atgatcctaaagacttag-aaaaactcaacgctgtttttccttgtagtgagggacaattacacctcattttttcaaaaggtccttacgacctaagttttc 323  Q
    ||||  |  | || | || |||||||   | | ||||||||||| |  || |  ||||  |  || ||||| || |||||||| || |||||||||||||    
T  41369620 atgactccgacga-tcagaaaaaactagccaccgtttttccttgcaacgaagcgcaatcgcctcttattttctccaaaggtccatatgacctaagttttc 41369718  T
Q  324 tgaaatccaagtttaggactgagccaaaaatagaaaa 360  Q
    ||||||| || ||||||||||||||||||||||||||    
T  41369719 tgaaatctaaatttaggactgagccaaaaatagaaaa 41369755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 41 - 360
Target Start/End: Original strand, 22795251 - 22795573
Alignment:
Q  41 atgacgcgcgcataaggttcttcttctcaaccaacgaaacaatatgaaccaagtgc---caatcttcccataaatcctcaatttatggaagaaccagatg 137  Q
    |||||||||||  ||||||||||||||||  |||| |||||  |||||||||  |    ||| |||| |  ||||| |||||| ||||||||||| |||     
T  22795251 atgacgcgcgctgaaggttcttcttctcagtcaacaaaacatcatgaaccaaccgatctcaaccttcgcggaaatcttcaattcatggaagaaccggata 22795350  T
Q  138 tcaaagaagcttaagacaaaatctggaaatcccaggtaatcattccatgccctaactcatcgcatgcatacctaggacctttgccggatgatcctaaaga 237  Q
    ||||||||||| |||| ||||||||||||||||||||||| ||  ||||||| || |||||||||||||||||||| ||||||| |||||| |  ||| |    
T  22795351 tcaaagaagctgaagataaaatctggaaatcccaggtaattatctcatgcccaaattcatcgcatgcatacctagggcctttgcaggatga-ctcaaaca 22795449  T
Q  238 cttag-aaaaactcaacgctgtttttccttgtagtgagggacaattacacctcattttttcaaaaggtccttacgacctaagttttctgaaatccaagtt 336  Q
     | || ||||||||||   | |||| ||||||| ||||| |||| | | ||||||||||||||||||||| || ||| |||| ||| ||||||| |||||    
T  22795450 atcagaaaaaactcaataatattttcccttgtaatgaggaacaaatgcccctcattttttcaaaaggtccatatgacataagatttttgaaatctaagtt 22795549  T
Q  337 taggactgagccaaaaatagaaaa 360  Q
    |||||| || || |||||||||||    
T  22795550 taggaccgaacctaaaatagaaaa 22795573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 143 - 348
Target Start/End: Complemental strand, 4567475 - 4567270
Alignment:
Q  143 gaagcttaagacaaaatctggaaatcccaggtaatcattccatgccctaactcatcgcatgcatacctaggacctttgccggatgatcctaaagacttag 242  Q
    |||||| |||| |||||||| |||||||||||||| |   |||||||||||||| |||||||||   |||||||| | || ||||| |   ||||| |||    
T  4567475 gaagctgaagataaaatctgaaaatcccaggtaattaactcatgccctaactcaccgcatgcatttttaggacctcttccagatgaccaagaagacctag 4567376  T
Q  243 aaaaactcaacgctgtttttccttgtagtgagggacaattacacctcattttttcaaaaggtccttacgacctaagttttctgaaatccaagtttaggac 342  Q
    ||||||| | ||  || ||||| |||  |||   ||||| ||  || |||||| | ||||||||||| |||||||||||  |||||||||| ||||||||    
T  4567375 aaaaacttagcgtcgtctttccctgttttgaaaaacaatcacctctgatttttaccaaaggtccttatgacctaagtttcttgaaatccaaatttaggac 4567276  T
Q  343 tgagcc 348  Q
     |||||    
T  4567275 agagcc 4567270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0101 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 17 - 361
Target Start/End: Original strand, 47026 - 47370
Alignment:
Q  17 actgaaagaaaaatttgaatctctatgacgcgcgcataaggttcttcttctcaaccaacgaaacaatatgaaccaagtgccaatcttcccataaatcctc 116  Q
    ||||||| ||||||||||||||| ||||| |||||| ||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  47026 actgaaacaaaaatttgaatctccatgacacgcgcagaaggttcctcttctcaaccaacgaaacaacatgaaccaagtgccaattttcccataaatcctc 47125  T
Q  117 aatttatggaagaaccagatgtcaaagaagcttaagacaaaatctggaaatcccaggtaatcattccatgccctaactcatcgcatgcatacctaggacc 216  Q
    | |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||| ||    
T  47126 agtttatggaagaaccagatgtcaaagaagatgaagacaaaatctggaaatcccaggtaatcatctcatgcccaaactcatcgcatgcatacctagggcc 47225  T
Q  217 tttgccggatgatcctaaagacttag-aaaaactcaacgctgtttttccttgtagtgagggacaattacacctcattttttcaaaaggtccttacgacct 315  Q
    ||||||||| ||  |  | || | || |||||||  || | ||||||||||| |  |||| |||||| |  || ||||| ||||||||||| || |||||    
T  47226 tttgccggacgactccgacga-tcagaaaaaactagacaccgtttttccttgcaacgaggcacaattgcctcttattttctcaaaaggtccatatgacct 47324  T
Q  316 aagttttctgaaatccaagtttaggactgagccaaaaatagaaaat 361  Q
    ||||||| |||| || || |||||||| || || || |||||||||    
T  47325 aagttttttgaagtctaaatttaggaccgaacccaagatagaaaat 47370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0101; HSP #2
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 17 - 361
Target Start/End: Original strand, 51664 - 52008
Alignment:
Q  17 actgaaagaaaaatttgaatctctatgacgcgcgcataaggttcttcttctcaaccaacgaaacaatatgaaccaagtgccaatcttcccataaatcctc 116  Q
    ||||||| ||||||||||||||| ||||| |||||| ||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  51664 actgaaacaaaaatttgaatctccatgacacgcgcagaaggttcctcttctcaaccaacgaaacaacatgaaccaagtgccaattttcccataaatcctc 51763  T
Q  117 aatttatggaagaaccagatgtcaaagaagcttaagacaaaatctggaaatcccaggtaatcattccatgccctaactcatcgcatgcatacctaggacc 216  Q
    | |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||  ||||||| |||| ||| |||||||||||||| ||    
T  51764 agtttatggaagaaccagatgtcaaagaagatgaagacaaaatctggaaatcccaggtaatcatatcatgcccaaactaatcacatgcatacctagggcc 51863  T
Q  217 tttgccggatgatcctaaagacttag-aaaaactcaacgctgtttttccttgtagtgagggacaattacacctcattttttcaaaaggtccttacgacct 315  Q
    ||||||||| ||  |  | || | || |||||||  || | ||||||||||| |  |||| |||||| |  || ||||| ||||||||||| || |||||    
T  51864 tttgccggacgactccgacga-tcagaaaaaactagacaccgtttttccttgcaacgaggcacaattgcctcttattttctcaaaaggtccatatgacct 51962  T
Q  316 aagttttctgaaatccaagtttaggactgagccaaaaatagaaaat 361  Q
    ||||||| |||| || || |||||||| || || || |||||||||    
T  51963 aagttttttgaagtctaaatttaggaccgaacccaagatagaaaat 52008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 146; Significance: 8e-77; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 11 - 360
Target Start/End: Complemental strand, 23495940 - 23495591
Alignment:
Q  11 tcgttcactgaaagaaaaatttgaatctctatgacgcgcgcataaggttcttcttctcaaccaacgaaacaatatgaaccaagtgccaatcttcccataa 110  Q
    ||||||| ||||  ||||||||| | ||| |||||||||||  ||||||||||||||||| |||| |||||| ||||||||| || ||||||||||||||    
T  23495940 tcgttcattgaaccaaaaatttgtaactccatgacgcgcgctgaaggttcttcttctcaatcaacaaaacaacatgaaccaaatgtcaatcttcccataa 23495841  T
Q  111 atcctcaatttatggaagaaccagatgtcaaagaagcttaagacaaaatctggaaatcccaggtaatcattccatgccctaactcatcgcatgcatacct 210  Q
    ||||||| |||||||||||||| ||| ||||||||| | |||||||||||||||||||||||||||||||   |||||| ||||||||||||||||||||    
T  23495840 atcctcagtttatggaagaaccggatatcaaagaagatgaagacaaaatctggaaatcccaggtaatcatcttatgcccaaactcatcgcatgcatacct 23495741  T
Q  211 aggacctttgccggatgatcctaaagacttagaaaaactcaacgctgtttttccttgtagtgagggacaattacacctcattttttcaaaaggtccttac 310  Q
    ||| ||||||||||||||  || | ||    ||||||||  || |||||||||||||||| |||| |||| |||  |||||||| ||||||||||| ||     
T  23495740 agggcctttgccggatgactctgatgatcaggaaaaactagacactgtttttccttgtagcgaggaacaactacctctcattttgtcaaaaggtccatat 23495641  T
Q  311 gacctaagttttctgaaatccaagtttaggactgagccaaaaatagaaaa 360  Q
    |||||||||||  ||||||| || ||||| || || || || ||||||||    
T  23495640 gacctaagtttcttgaaatctaaatttagaaccgaacccaagatagaaaa 23495591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 41 - 360
Target Start/End: Original strand, 19026155 - 19026477
Alignment:
Q  41 atgacgcgcgcataaggttcttcttctcaaccaacgaaacaatatgaaccaagt---gccaatcttcccataaatcctcaatttatggaagaaccagatg 137  Q
    |||| ||||||  ||||||||||||||||| |||| |||||  ||||||||| |   | ||||||||||| ||||||| |||||||||||||| | |||     
T  19026155 atgatgcgcgctgaaggttcttcttctcaatcaacaaaacagcatgaaccaactaatgtcaatcttcccaaaaatcctaaatttatggaagaatcggata 19026254  T
Q  138 tcaaagaagcttaagacaaaatctggaaatcccaggtaatcattccatgccctaactcatcgcatgcatacctaggacctttgccggatgatcctaaaga 237  Q
    ||||||||||| |||||||||||||||||||||||||||||||  ||||||| || ||||||||||||||||||||  |||||||||||||  |  | ||    
T  19026255 tcaaagaagctgaagacaaaatctggaaatcccaggtaatcatctcatgcccaaattcatcgcatgcatacctagggtctttgccggatgactccgatga 19026354  T
Q  238 cttagaaaaactcaacgctgtttttccttgtagtgagggacaattacacctcattttttcaaaaggtccttacgacctaagttttctgaaatccaagttt 337  Q
       |||||| || ||  ||||||| |||||||  |||| |||||| |  |||||||| ||||||||||| || |||||||| ||| ||||||| || |||    
T  19026355 tcaagaaaatctaaatactgttttcccttgtaacgaggaacaattgcctctcattttctcaaaaggtccatatgacctaagctttttgaaatctaaattt 19026454  T
Q  338 aggactgagccaaaaatagaaaa 360  Q
    || || || || || ||||||||    
T  19026455 agaaccgaacccaagatagaaaa 19026477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 115 - 206
Target Start/End: Original strand, 26461542 - 26461632
Alignment:
Q  115 tcaatttatggaagaaccagatgtcaaagaagcttaagacaaaatctggaaatcccaggtaatcattccatgccctaactcatcgcatgcat 206  Q
    |||||| || |||||||| |||||||| || ||| |||| ||||||||||||| || |||||||||| |||||||||| || || |||||||    
T  26461542 tcaattcatagaagaaccggatgtcaaggaggctgaagaaaaaatctggaaat-cctggtaatcatttcatgccctaattcttcacatgcat 26461632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0304 (Bit Score: 136; Significance: 7e-71; HSPs: 1)
Name: scaffold0304
Description:

Target: scaffold0304; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 41 - 360
Target Start/End: Original strand, 6555 - 6874
Alignment:
Q  41 atgacgcgcgcataaggttcttcttctcaaccaacgaaacaatatgaaccaagtgccaatcttcccataaatcctcaatttatggaagaaccagatgtca 140  Q
    ||||||||||   ||||||||||||||||| ||||||||||| ||||||||| || |||||||||| ||||||||||||||||||||||||  ||| |||    
T  6555 atgacgcgcggtgaaggttcttcttctcaatcaacgaaacaacatgaaccaaatgtcaatcttcccgtaaatcctcaatttatggaagaacaggatatca 6654  T
Q  141 aagaagcttaagacaaaatctggaaatcccaggtaatcattccatgccctaactcatcgcatgcatacctaggacctttgccggatgatcctaaagactt 240  Q
    |||||||| |||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||| |||||| |||||||  |  | ||       
T  6655 aagaagctgaagacaaaatctggaaatcccaggtaatcatctcatgcccaaactcatcgcatgcatacctagggcctttgtcggatgactccgatgatca 6754  T
Q  241 agaaaaactcaacgctgtttttccttgtagtgagggacaattacacctcattttttcaaaaggtccttacgacctaagttttctgaaatccaagtttagg 340  Q
    ||||||||| ||  || ||||||||||||| |||| |||| |||  |||||||| ||||||||||| || |||| ||||||| ||||||| || |||||     
T  6755 agaaaaactaaaaactatttttccttgtagcgaggaacaactacctctcattttctcaaaaggtccatatgaccaaagttttttgaaatctaaatttaga 6854  T
Q  341 actgagccaaaaatagaaaa 360  Q
    || || || || ||||||||    
T  6855 accgaacccaagatagaaaa 6874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 136; Significance: 7e-71; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 41 - 360
Target Start/End: Original strand, 14557659 - 14557978
Alignment:
Q  41 atgacgcgcgcataaggttcttcttctcaaccaacgaaacaatatgaaccaagtgccaatcttcccataaatcctcaatttatggaagaaccagatgtca 140  Q
    |||||||||||  ||||||||||||||||| ||||||||||| ||||| | | || |||||||||| ||||| |||||||||||||||||||||||||||    
T  14557659 atgacgcgcgcggaaggttcttcttctcaatcaacgaaacaacatgaaacgaatgtcaatcttcccgtaaattctcaatttatggaagaaccagatgtca 14557758  T
Q  141 aagaagcttaagacaaaatctggaaatcccaggtaatcattccatgccctaactcatcgcatgcatacctaggacctttgccggatgatcctaaagactt 240  Q
    |||||||| |||||||||||||||||||||||||||||||  |||| || ||||||||||||||||||||||| ||||||||||| ||  |  | ||  |    
T  14557759 aagaagctgaagacaaaatctggaaatcccaggtaatcatctcatgtccaaactcatcgcatgcatacctagggcctttgccggacgactccgatgatct 14557858  T
Q  241 agaaaaactcaacgctgtttttccttgtagtgagggacaattacacctcattttttcaaaaggtccttacgacctaagttttctgaaatccaagtttagg 340  Q
     |||||||| ||| |||| ||||||||||| ||||  ||||| |  |||||||| || |||||||| || |||||||| ||| ||||||| || |||||     
T  14557859 cgaaaaactaaacactgtctttccttgtagcgaggatcaattgcctctcattttctccaaaggtccatatgacctaagctttttgaaatctaaatttaga 14557958  T
Q  341 actgagccaaaaatagaaaa 360  Q
    || || || |||||||||||    
T  14557959 accgaacctaaaatagaaaa 14557978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 41 - 339
Target Start/End: Original strand, 13277996 - 13278294
Alignment:
Q  41 atgacgcgcgcataaggttcttcttctcaaccaacgaaacaatatgaaccaagtgccaatcttcccataaatcctcaatttatggaagaaccagatgtca 140  Q
    |||||||||||  |||||||||||||| |  |||| |||||  ||||||||| || ||||||||| | |||||||||||||||||||||||||||||| |    
T  13277996 atgacgcgcgctgaaggttcttcttcttattcaacaaaacagcatgaaccaaatgtcaatcttccaaaaaatcctcaatttatggaagaaccagatgtaa 13278095  T
Q  141 aagaagcttaagacaaaatctggaaatcccaggtaatcattccatgccctaactcatcgcatgcatacctaggacctttgccggatgatcctaaagactt 240  Q
    |||||||| |||||||||||||||||||||||||||||||  ||||||| || |||||||||||||||||||| ||||||||||||||  |  | |||      
T  13278096 aagaagctgaagacaaaatctggaaatcccaggtaatcatctcatgcccaaattcatcgcatgcatacctagggcctttgccggatgactccgatgacca 13278195  T
Q  241 agaaaaactcaacgctgtttttccttgtagtgagggacaattacacctcattttttcaaaaggtccttacgacctaagttttctgaaatccaagtttag 339  Q
     ||| |||| ||  |||||||||||||||| |||| |||| |||  || |||||  |||||||||| || |||||||| ||| ||||||| || |||||    
T  13278196 ggaagaactaaatactgtttttccttgtagcgaggaacaactacctcttattttcacaaaaggtccatatgacctaagctttttgaaatctaaatttag 13278294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 41 - 360
Target Start/End: Original strand, 14714906 - 14715228
Alignment:
Q  41 atgacgcgcgcataaggttcttcttctcaaccaacgaaacaatatgaaccaagtgcc---aatcttcccataaatcctcaatttatggaagaaccagatg 137  Q
    |||||||||||  ||||||||||||||||  ||||||||||  ||||||| | ||     || |||| |  ||||| |||||| ||||||||||| |||     
T  14714906 atgacgcgcgctgaaggttcttcttctcagtcaacgaaacatcatgaaccgactgatcttaaccttcgcggaaatcttcaattcatggaagaaccggata 14715005  T
Q  138 tcaaagaagcttaagacaaaatctggaaatcccaggtaatcattccatgccctaactcatcgcatgcatacctaggacctttgccggatgatcctaaaga 237  Q
    ||||||||||| |||| ||||||||||||||||||||||| ||  ||||||| || |||||||||||||||||||| ||||||||||||||  | || ||    
T  14715006 tcaaagaagctgaagataaaatctggaaatcccaggtaattatctcatgcccaaattcatcgcatgcatacctagggcctttgccggatgactcaaacga 14715105  T
Q  238 cttagaaaaactcaacgctgtttttccttgtagtgagggacaattacacctcattttttcaaaaggtccttacgacctaagttttctgaaatccaagttt 337  Q
        |||||||||||   |||||| ||||||| ||||| |||||| | ||||||||||||||||||||| || ||| |||| ||| ||||||| ||||||    
T  14715106 tcaggaaaaactcaatattgttttcccttgtaatgaggaacaattgcccctcattttttcaaaaggtccatatgacttaagctttttgaaatctaagttt 14715205  T
Q  338 aggactgagccaaaaatagaaaa 360  Q
    ||||| || || |||||||||||    
T  14715206 aggaccgaacctaaaatagaaaa 14715228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 134; Significance: 1e-69; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 11 - 360
Target Start/End: Complemental strand, 22647941 - 22647592
Alignment:
Q  11 tcgttcactgaaagaaaaatttgaatctctatgacgcgcgcataaggttcttcttctcaaccaacgaaacaatatgaaccaagtgccaatcttcccataa 110  Q
    ||||||| ||||  ||||||| | | ||| |||||||||||  ||||||||||||||||| ||||||||||| ||||||||| || ||||||||||||||    
T  22647941 tcgttcattgaaccaaaaattcgtaactccatgacgcgcgctgaaggttcttcttctcaatcaacgaaacaacatgaaccaaatgtcaatcttcccataa 22647842  T
Q  111 atcctcaatttatggaagaaccagatgtcaaagaagcttaagacaaaatctggaaatcccaggtaatcattccatgccctaactcatcgcatgcatacct 210  Q
    ||||||| |||||||||||||| ||| ||||||||||| |||||||||| ||||||||||||||||||||  ||||||| ||||||||||||||||||||    
T  22647841 atcctcagtttatggaagaaccggatatcaaagaagctgaagacaaaatatggaaatcccaggtaatcatctcatgcccaaactcatcgcatgcatacct 22647742  T
Q  211 aggacctttgccggatgatcctaaagacttagaaaaactcaacgctgtttttccttgtagtgagggacaattacacctcattttttcaaaaggtccttac 310  Q
    ||| |||||| |||||||  |  | ||    |||||||| |||  ||||||||||||| | |||| |||| | |  |||||||| ||||||||||| ||     
T  22647741 agggcctttgtcggatgactccgatgatcaggaaaaactaaacattgtttttccttgtggcgaggaacaactgcctctcattttctcaaaaggtccatat 22647642  T
Q  311 gacctaagttttctgaaatccaagtttaggactgagccaaaaatagaaaa 360  Q
    |||||||||||  ||||||| || ||||| || || || || ||||||||    
T  22647641 gacctaagtttcttgaaatctaaatttagaaccgaacccaagatagaaaa 22647592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 41 - 360
Target Start/End: Original strand, 23612244 - 23612563
Alignment:
Q  41 atgacgcgcgcataaggttcttcttctcaaccaacgaaacaatatgaaccaagtgccaatcttcccataaatcctcaatttatggaagaaccagatgtca 140  Q
    |||||||||||  ||||||||||||||||| |||| ||| |  ||||||||| |  ||||||||||||||||||||| |||||||||||||| ||| |||    
T  23612244 atgacgcgcgctgaaggttcttcttctcaatcaactaaatatcatgaaccaaatttcaatcttcccataaatcctcagtttatggaagaaccggatatca 23612343  T
Q  141 aagaagcttaagacaaaatctggaaatcccaggtaatcattccatgccctaactcatcgcatgcatacctaggacctttgccggatgatcctaaagactt 240  Q
    |||||||| |||||||||||||||||||| ||||||||||  ||||||| ||||||||||||||||||||||| ||||||||||||||  |  | ||       
T  23612344 aagaagctgaagacaaaatctggaaatcctaggtaatcatctcatgcccaaactcatcgcatgcatacctagggcctttgccggatgactccgatgatca 23612443  T
Q  241 agaaaaactcaacgctgtttttccttgtagtgagggacaattacacctcattttttcaaaaggtccttacgacctaagttttctgaaatccaagtttagg 340  Q
     |||||||| ||| |||||||||||||||| |||| |||| | |  |||||||| ||||||||||| || |||||||||||  ||||||| || |||||     
T  23612444 ggaaaaactaaacactgtttttccttgtagcgaggaacaactgcctctcattttctcaaaaggtccatatgacctaagtttcttgaaatctaaatttaga 23612543  T
Q  341 actgagccaaaaatagaaaa 360  Q
    || || || || ||||||||    
T  23612544 accgaacccaagatagaaaa 23612563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 41 - 228
Target Start/End: Original strand, 23615900 - 23616087
Alignment:
Q  41 atgacgcgcgcataaggttcttcttctcaaccaacgaaacaatatgaaccaagtgccaatcttcccataaatcctcaatttatggaagaaccagatgtca 140  Q
    |||||||||||  ||||||||||||||||| |||| |||||| ||||| ||| || |||||||| ||||||||||||||||||||||||||| | | |||    
T  23615900 atgacgcgcgctgaaggttcttcttctcaatcaacaaaacaacatgaaacaaatgtcaatcttctcataaatcctcaatttatggaagaaccgggtctca 23615999  T
Q  141 aagaagcttaagacaaaatctggaaatcccaggtaatcattccatgccctaactcatcgcatgcatacctaggacctttgccggatga 228  Q
    |||||||| |||||||||||||||||||||||||||||||| |||| || |||||||| |||||||||||||| ||||||||||||||    
T  23616000 aagaagctgaagacaaaatctggaaatcccaggtaatcatttcatgtccaaactcatcacatgcatacctagggcctttgccggatga 23616087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 84 - 339
Target Start/End: Original strand, 23191370 - 23191625
Alignment:
Q  84 atgaaccaagtgccaatcttcccataaatcctcaatttatggaagaaccagatgtcaaagaagcttaagacaaaatctggaaatcccaggtaatcattcc 183  Q
    ||||||||| |  |||||||||| ||| |||||| |||| ||||||||| ||| ||||||||||| |||||||||||||||||||| ||||||||||  |    
T  23191370 atgaaccaaatatcaatcttcccgtaagtcctcagtttagggaagaaccggatatcaaagaagctgaagacaaaatctggaaatcctaggtaatcatctc 23191469  T
Q  184 atgccctaactcatcgcatgcatacctaggacctttgccggatgatcctaaagacttagaaaaactcaacgctgtttttccttgtagtgagggacaatta 283  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||  |  | ||    ||||||||   | |||||||||||||||| |||| |||| |     
T  23191470 atgcccaaactcatcgcatgcatacctagggcctttgccggatgactccgatgatcaggaaaaactacgcactgtttttccttgtagcgaggaacaactg 23191569  T
Q  284 cacctcattttttcaaaaggtccttacgacctaagttttctgaaatccaagtttag 339  Q
    |  |||||||| ||||||||||| || |||||||||||  ||||||| || |||||    
T  23191570 cctctcattttctcaaaaggtccatatgacctaagtttcttgaaatctaaatttag 23191625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 118 - 360
Target Start/End: Original strand, 23617020 - 23617262
Alignment:
Q  118 atttatggaagaaccagatgtcaaagaagcttaagacaaaatctggaaatcccaggtaatcattccatgccctaactcatcgcatgcatacctaggacct 217  Q
    ||||||||||||||| | | ||||||||||| |||||||||||||||||||||||||||||||| |||| || |||||||| |||||||||||||| |||    
T  23617020 atttatggaagaaccgggtctcaaagaagctgaagacaaaatctggaaatcccaggtaatcatttcatgtccaaactcatcacatgcatacctagggcct 23617119  T
Q  218 ttgccggatgatcctaaagacttag-aaaaactcaacgctgtttttccttgtagtgagggacaattacacctcattttttcaaaaggtccttacgaccta 316  Q
    |||||||||||  |  | || | || ||||||| ||| |||||||||||||||| |||| |||| | |  |||||||| ||||||||||| || ||||||    
T  23617120 ttgccggatgactccgatga-tcagaaaaaactaaacactgtttttccttgtagcgaggaacaactgcctctcattttctcaaaaggtccatatgaccta 23617218  T
Q  317 agttttctgaaatccaagtttaggactgagccaaaaatagaaaa 360  Q
    |||||| ||||||| || ||||| || || || || ||||||||    
T  23617219 agttttttgaaatctaaatttagaaccgaacccaagatagaaaa 23617262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 113 - 216
Target Start/End: Original strand, 25349992 - 25350095
Alignment:
Q  113 cctcaatttatggaagaaccagatgtcaaagaagcttaagacaaaatctggaaatcccaggtaatcattccatgccctaactcatcgcatgcatacctag 212  Q
    |||||||||||  |||||||||| || || |||||  ||||  |||||||||||||||| |||||||||||||| ||||  ||| | ||||||||  |||    
T  25349992 cctcaatttatttaagaaccagaggttaaggaagcggaagaacaaatctggaaatcccacgtaatcattccatgtcctatttcaccacatgcatatttag 25350091  T
Q  213 gacc 216  Q
    ||||    
T  25350092 gacc 25350095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 339
Target Start/End: Original strand, 25350178 - 25350218
Alignment:
Q  299 aaaggtccttacgacctaagttttctgaaatccaagtttag 339  Q
    ||||||||||||||||| ||||| ||||||||||| |||||    
T  25350178 aaaggtccttacgaccttagtttcctgaaatccaaatttag 25350218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0270 (Bit Score: 133; Significance: 4e-69; HSPs: 1)
Name: scaffold0270
Description:

Target: scaffold0270; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 41 - 361
Target Start/End: Original strand, 15981 - 16301
Alignment:
Q  41 atgacgcgcgcataaggttcttcttctcaaccaacgaaacaatatgaaccaagtgccaatcttcccataaatcctcaatttatggaagaaccagatgtca 140  Q
    |||||||||||| ||||||||||||||||| ||||||||||| ||||||||| || |||||||||| ||||| ||||||||||||||||||| ||||| |    
T  15981 atgacgcgcgcagaaggttcttcttctcaatcaacgaaacaacatgaaccaaatgtcaatcttcccgtaaattctcaatttatggaagaaccggatgtta 16080  T
Q  141 aagaagcttaagacaaaatctggaaatcccaggtaatcattccatgccctaactcatcgcatgcatacctaggacctttgccggatgatcctaaagactt 240  Q
     ||||||| |||||||||||||||||||||||||||||||  |||| || ||||||||||||||||||||||| ||| ||||||||||  |  | ||       
T  16081 gagaagctgaagacaaaatctggaaatcccaggtaatcatctcatgtccaaactcatcgcatgcatacctagggcctgtgccggatgactccgatgatcc 16180  T
Q  241 agaaaaactcaacgctgtttttccttgtagtgagggacaattacacctcattttttcaaaaggtccttacgacctaagttttctgaaatccaagtttagg 340  Q
     |||||||| ||| |||||||||||||||| ||||  ||||| |  |||||||| || |||||||| || |||||||| ||| ||||||| || ||||      
T  16181 cgaaaaactaaacactgtttttccttgtagcgaggatcaattgcctctcattttctccaaaggtccatatgacctaagctttttgaaatctaaatttaaa 16280  T
Q  341 actgagccaaaaatagaaaat 361  Q
    || || || ||||||||||||    
T  16281 accgaacccaaaatagaaaat 16301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1701 (Bit Score: 129; Significance: 1e-66; HSPs: 1)
Name: scaffold1701
Description:

Target: scaffold1701; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 45 - 360
Target Start/End: Complemental strand, 1301 - 986
Alignment:
Q  45 cgcgcgcataaggttcttcttctcaaccaacgaaacaatatgaaccaagtgccaatcttcccataaatcctcaatttatggaagaaccagatgtcaaaga 144  Q
    |||||| | ||||||||||||||||||||||||||||| ||||||||| || |||||| ||||||||| |||| ||||||||||||||||| ||||  ||    
T  1301 cgcgcgtagaaggttcttcttctcaaccaacgaaacaacatgaaccaaatgtcaatctccccataaatactcagtttatggaagaaccagacgtcaggga 1202  T
Q  145 agcttaagacaaaatctggaaatcccaggtaatcattccatgccctaactcatcgcatgcatacctaggacctttgccggatgatcctaaagacttag-a 243  Q
    |||| |||||| ||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||| ||||||||||| ||  |  | || | || |    
T  1201 agctgaagacagaatctggaaatcccaggtaatcatctcatgcccaaactcatcgcatgcatacctagggcctttgccggacgactccgacga-tcagaa 1103  T
Q  244 aaaactcaacgctgtttttccttgtagtgagggacaattacacctcattttttcaaaaggtccttacgacctaagttttctgaaatccaagtttaggact 343  Q
    ||||||  || |||||||||||||||  |||| |||||| |  || ||||| ||||||||||| || |||||||||||| ||||||| || |||||||||    
T  1102 aaaactagactctgtttttccttgtaacgaggcacaattgcctcttattttctcaaaaggtccatatgacctaagttttttgaaatctaaatttaggact 1003  T
Q  344 gagccaaaaatagaaaa 360  Q
    || || || ||||||||    
T  1002 gaacccaagatagaaaa 986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 128; Significance: 4e-66; HSPs: 2)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 122 - 361
Target Start/End: Complemental strand, 21902 - 21663
Alignment:
Q  122 atggaagaaccagatgtcaaagaagcttaagacaaaatctggaaatcccaggtaatcattccatgccctaactcatcgcatgcatacctaggacctttgc 221  Q
    ||||||||||||||  ||||||||||| |||| ||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||| |||||||    
T  21902 atggaagaaccagacatcaaagaagctgaagataaaatctggaaatcccaggtaatcatctcatgccccaactcatcgcatgcatacctagggcctttgc 21803  T
Q  222 cggatgatcctaaagacttagaaaaactcaacgctgtttttccttgtagtgagggacaattacacctcattttttcaaaaggtccttacgacctaagttt 321  Q
    |  |||| ||  ||||  |||||||||||||||||||||| ||||||| |||||| || ||||  ||||||| |||||||| |||||| ||||| |||||    
T  21802 caaatgaccccgaagatctagaaaaactcaacgctgttttcccttgtaatgaggggcagttacctctcatttcttcaaaagttccttatgacctgagttt 21703  T
Q  322 tctgaaatccaagtttaggactgagccaaaaatagaaaat 361  Q
    | ||||||||||||||||||||||||| ||||| ||||||    
T  21702 tttgaaatccaagtttaggactgagcctaaaattgaaaat 21663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 41 - 361
Target Start/End: Complemental strand, 84401 - 84078
Alignment:
Q  41 atgacgcgcgcataaggttcttcttctcaaccaacgaaacaatatgaaccaagtgc---caatcttcccataaatcctcaatttatggaagaaccagatg 137  Q
    |||||||| ||  ||||||||||||||||  |||| |||||  ||||||||| ||    ||| |||| || ||||| |||||||||||||||||| |||     
T  84401 atgacgcgtgctgaaggttcttcttctcagtcaacaaaacatcatgaaccaactgatttcaaccttcgcaaaaatcttcaatttatggaagaaccggata 84302  T
Q  138 tcaaagaagcttaagacaaaatctggaaatcccaggtaatcattccatgccctaactcatcgcatgcatacctaggacctttgccggatgatcctaaaga 237  Q
    ||||||||||| |||||||||||||||||||||||||||| ||  ||||||| || |||||||||| ||||||||| ||||||||||||||  || | ||    
T  84301 tcaaagaagctgaagacaaaatctggaaatcccaggtaattatctcatgcccaaattcatcgcatgtatacctagggcctttgccggatgactctgacga 84202  T
Q  238 cttagaaaaactcaacgctgtttttccttgtagtgagggacaattacacctcattttttcaaaaggtccttacgacctaagttttctgaaatccaagttt 337  Q
        ||||| |||||  ||||||| ||||||| ||||| |||||| | |||  |||||||||||||||| || |||||||| ||| |||||||||| |||    
T  84201 tcaggaaaatctcaatactgttttcccttgtaatgaggaacaattgccccttgttttttcaaaaggtccatatgacctaagctttttgaaatccaaattt 84102  T
Q  338 aggactgagccaaaaatagaaaat 361  Q
    || || || || || |||||||||    
T  84101 agaaccgaacctaatatagaaaat 84078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 11 - 225
Target Start/End: Complemental strand, 79180 - 78966
Alignment:
Q  11 tcgttcactgaaagaaaaatttgaatctctatgacgcgcgcataaggttcttcttctcaaccaacgaaacaatatgaaccaagtgccaatcttcccataa 110  Q
    ||||||| ||||  ||||||||| ||||| |||||||||||  |||||||||| |||||| ||||||||||| ||||||||| ||  ||||||||  |||    
T  79180 tcgttcattgaaccaaaaatttgtatctccatgacgcgcgctgaaggttcttcctctcaatcaacgaaacaagatgaaccaaatgttaatcttcctgtaa 79081  T
Q  111 atcctcaatttatggaagaaccagatgtcaaagaagcttaagacaaaatctggaaatcccaggtaatcattccatgccctaactcatcgcatgcatacct 210  Q
    ||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||    
T  79080 atcctcagtttatggaagaaccagatatcaaagaagctgaagacaaaatctggaaatcccaggtaatcatctcatgcccaaactcatcgcatgcatacct 78981  T
Q  211 aggacctttgccgga 225  Q
    ||| |||||||||||    
T  78980 agggcctttgccgga 78966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 41 - 360
Target Start/End: Complemental strand, 43564 - 43245
Alignment:
Q  41 atgacgcgcgcataaggttcttcttctcaaccaacgaaacaatatgaaccaagtgccaatcttcccataaatcctcaatttatggaagaaccagatgtca 140  Q
    |||||||||||  |||||||||| |||||| ||||||||||| ||||||| | || ||||||||||||||| ||||| ||||| |||||||  ||| |||    
T  43564 atgacgcgcgctgaaggttcttcctctcaatcaacgaaacaacatgaacccaatgtcaatcttcccataaaccctcagtttattgaagaactggatatca 43465  T
Q  141 aagaagcttaagacaaaatctggaaatcccaggtaatcattccatgccctaactcatcgcatgcatacctaggacctttgccggatgatcctaaagactt 240  Q
    |||||||| |||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||| ||||||||||||||  |  | ||       
T  43464 aagaagctgaagacaaaatctggaaatcccaggtaatcatctcatgcccaaactcatcgcatgcatacctagggcctttgccggatgactccgatgatca 43365  T
Q  241 agaaaaactcaacgctgtttttccttgtagtgagggacaattacacctcattttttcaaaaggtccttacgacctaagttttctgaaatccaagtttagg 340  Q
     || |||||   | |||||||||||||||| |||| |||||| |  |||||||| ||||||||||| || |||||||||||  |||||||||| |||||     
T  43364 ggataaactacgcactgtttttccttgtagcgaggaacaattgcctctcattttctcaaaaggtccatatgacctaagtttcttgaaatccaaatttaga 43265  T
Q  341 actgagccaaaaatagaaaa 360  Q
    || || || || ||||||||    
T  43264 accgaacccaagatagaaaa 43245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0323 (Bit Score: 123; Significance: 4e-63; HSPs: 1)
Name: scaffold0323
Description:

Target: scaffold0323; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 11 - 225
Target Start/End: Complemental strand, 3914 - 3700
Alignment:
Q  11 tcgttcactgaaagaaaaatttgaatctctatgacgcgcgcataaggttcttcttctcaaccaacgaaacaatatgaaccaagtgccaatcttcccataa 110  Q
    ||||||| ||||  ||||||| | | ||| |||||||||||| |||||| |||||||||| ||||||||||| ||||||||| || ||||||||||||||    
T  3914 tcgttcattgaaccaaaaattcgtaactccatgacgcgcgcagaaggttattcttctcaatcaacgaaacaacatgaaccaaatgtcaatcttcccataa 3815  T
Q  111 atcctcaatttatggaagaaccagatgtcaaagaagcttaagacaaaatctggaaatcccaggtaatcattccatgccctaactcatcgcatgcatacct 210  Q
    ||||||| ||||||||||||||| || ||||||||||| ||||||||||||||||||| ||| |||||||  ||||||| ||||||||||||||||||||    
T  3814 atcctcagtttatggaagaaccatatatcaaagaagctgaagacaaaatctggaaatctcagctaatcatctcatgcccaaactcatcgcatgcatacct 3715  T
Q  211 aggacctttgccgga 225  Q
    ||| |||||||||||    
T  3714 agggcctttgccgga 3700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 123; Significance: 4e-63; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 122 - 360
Target Start/End: Complemental strand, 389368 - 389130
Alignment:
Q  122 atggaagaaccagatgtcaaagaagcttaagacaaaatctggaaatcccaggtaatcattccatgccctaactcatcgcatgcatacctaggacctttgc 221  Q
    ||||||||||||||  ||||||||||| |||| ||||||||||||||||||||||| ||  ||||||| |||||||||||||||||||||||  ||||||    
T  389368 atggaagaaccagacatcaaagaagctgaagataaaatctggaaatcccaggtaattatctcatgccccaactcatcgcatgcatacctagggtctttgc 389269  T
Q  222 cggatgatcctaaagacttagaaaaactcaacgctgtttttccttgtagtgagggacaattacacctcattttttcaaaaggtccttacgacctaagttt 321  Q
    |||||||  |  | ||  | |||||||| || ||| |||| ||||||| ||||||||| |||| |||||||||||||||||||||||| |||||| ||||    
T  389268 cggatgactccgacgatctggaaaaacttaatgctattttcccttgtaatgagggacagttacccctcattttttcaaaaggtccttatgacctatgttt 389169  T
Q  322 tctgaaatccaagtttaggactgagccaaaaatagaaaa 360  Q
    | ||||||||||||||||||||||||| |||||||||||    
T  389168 tttgaaatccaagtttaggactgagcctaaaatagaaaa 389130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 109 - 361
Target Start/End: Original strand, 116176 - 116428
Alignment:
Q  109 aaatcctcaatttatggaagaaccagatgtcaaagaagcttaagacaaaatctggaaatcccaggtaatcattccatgccctaactcatcgcatgcatac 208  Q
    ||||| |||| |||| ||||||   ||| |||||||| || |||||||||||||||||||||||||||| ||  ||||||| || ||||| |||||||||    
T  116176 aaatcttcaaattattgaagaaatggatatcaaagaaactgaagacaaaatctggaaatcccaggtaattatctcatgcccaaattcatcacatgcatac 116275  T
Q  209 ctaggacctttgccggatgatcctaaagacttagaaaaactcaacgctgtttttccttgtagtgagggacaattacacctcattttttcaaaaggtcctt 308  Q
    ||||| ||||||||| ||||  | || ||    |||||  ||||  || |||| ||||||| ||||| ||| |  | ||| ||||| ||||||||||| |    
T  116276 ctagggcctttgccgaatgactccaatgatcaggaaaatatcaatactattttcccttgtaatgaggaacagtcgccccttattttctcaaaaggtccat 116375  T
Q  309 acgacctaagttttctgaaatccaagtttaggactgagccaaaaatagaaaat 361  Q
    | |||||||| ||| |||||||||| ||||| || || || || |||||||||    
T  116376 atgacctaagctttttgaaatccaaatttagaaccgaacctaagatagaaaat 116428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 121; Significance: 6e-62; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 41 - 360
Target Start/End: Complemental strand, 40692 - 40373
Alignment:
Q  41 atgacgcgcgcataaggttcttcttctcaaccaacgaaacaatatgaaccaagtgccaatcttcccataaatcctcaatttatggaagaaccagatgtca 140  Q
    |||||||||||  ||||||||||||||||| |||| |||||| |||||||||  | ||| |||||||||||||||||||||||||||||||| ||||| |    
T  40692 atgacgcgcgctgaaggttcttcttctcaatcaacaaaacaacatgaaccaaacgtcaaacttcccataaatcctcaatttatggaagaaccggatgtta 40593  T
Q  141 aagaagcttaagacaaaatctggaaatcccaggtaatcattccatgccctaactcatcgcatgcatacctaggacctttgccggatgatcctaaagactt 240  Q
    |||||||| |||||||||| ||||||||||||||||| ||  ||||||| || |||||||||||||||||||| ||||||||||||||  |  | || |     
T  40592 aagaagctgaagacaaaatatggaaatcccaggtaattatctcatgcccaaattcatcgcatgcatacctagggcctttgccggatgactccgatga-tc 40494  T
Q  241 ag-aaaaactcaacgctgtttttccttgtagtgagggacaattacacctcattttttcaaaaggtccttacgacctaagttttctgaaatccaagtttag 339  Q
    || ||||||| ||  |||||||||||||||| |||| |||| | |  |||||||| ||||||||||| || |||||||| ||| ||||||| || |||||    
T  40493 agaaaaaactaaatactgtttttccttgtagcgaggaacaactgcctctcattttctcaaaaggtccatatgacctaagctttttgaaatctaaatttag 40394  T
Q  340 gactgagccaaaaatagaaaa 360  Q
     || || || || ||||||||    
T  40393 aaccgaacccaagatagaaaa 40373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 121; Significance: 6e-62; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 25 - 360
Target Start/End: Complemental strand, 1734679 - 1734344
Alignment:
Q  25 aaaaatttgaatctctatgacgcgcgcataaggttcttcttctcaaccaacgaaacaatatgaaccaagtgccaatcttcccataaatcctcaatttatg 124  Q
    |||||||||||| | |||  |||||| | ||||||| ||||||||||||| ||||||| ||||| ||| |||||||||| |||||||| |||| ||||||    
T  1734679 aaaaatttgaatttttatcgcgcgcgtagaaggttcgtcttctcaaccaatgaaacaacatgaaacaaatgccaatctttccataaatactcagtttatg 1734580  T
Q  125 gaagaaccagatgtcaaagaagcttaagacaaaatctggaaatcccaggtaatcattccatgccctaactcatcgcatgcatacctaggacctttgccgg 224  Q
    ||||||||||| || ||||||||| |||||| ||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||| ||||||||||    
T  1734579 gaagaaccagacgttaaagaagctgaagacagaatctggaaatcccaggtaattattccatgctcaaactcatcgcatgcatacctagggcctttgccgg 1734480  T
Q  225 atgatcctaaagacttag-aaaaactcaacgctgtttttccttgtagtgagggacaattacacctcattttttcaaaaggtccttacgacctaagttttc 323  Q
    ||||  | || || | || |||||||   | ||||||||||||| |  || |  ||||  |  || ||||| || |||||||| || |||||||||||||    
T  1734479 atgactccaacga-tcagaaaaaactagccactgtttttccttgcaacgaagcgcaatcgcctcttattttctccaaaggtccatatgacctaagttttc 1734381  T
Q  324 tgaaatccaagtttaggactgagccaaaaatagaaaa 360  Q
    ||||||| || ||||||||||| || |||||||||||    
T  1734380 tgaaatctaaatttaggactgaacccaaaatagaaaa 1734344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 41 - 361
Target Start/End: Original strand, 22334177 - 22334499
Alignment:
Q  41 atgacgcgcgcataaggttcttcttctcaaccaacgaaacaatatgaaccaagtgc---caatcttcccataaatcctcaatttatggaagaaccagatg 137  Q
    |||||||||||  ||||||||||||||||  |||| |||||  ||||||||| ||    ||| |||| || ||||| |||||||||||||||||| |||     
T  22334177 atgacgcgcgctgaaggttcttcttctcagtcaacaaaacatcatgaaccaactgatctcaaccttcacagaaatcttcaatttatggaagaaccggata 22334276  T
Q  138 tcaaagaagcttaagacaaaatctggaaatcccaggtaatcattccatgccctaactcatcgcatgcatacctaggacctttgccggatgatcctaaaga 237  Q
    ||||||||||| ||||||||||||||||||||||| |||| ||  ||||||| || |||||||||||||||||||| ||||||||||| ||  || | ||    
T  22334277 tcaaagaagctgaagacaaaatctggaaatcccagataattatctcatgcccaaattcatcgcatgcatacctagggcctttgccggacgactctgacga 22334376  T
Q  238 cttagaaaaactcaacgctgtttttccttgtagtgagggacaattacacctcattttttcaaaaggtccttacgacctaagttttctgaaatccaagttt 337  Q
        |||||||| ||  ||||||| ||||||| |  || |||||| | ||| ||||||||||||||||| || |||||||| ||| |||||||||| |||    
T  22334377 tcaggaaaaacttaatactgttttcccttgtaat-tggaacaattgccccttattttttcaaaaggtccatatgacctaagctttttgaaatccaaattt 22334475  T
Q  338 aggactgagccaaaaatagaaaat 361  Q
    || || || || || |||||||||    
T  22334476 agaaccgaacctaagatagaaaat 22334499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 121; Significance: 6e-62; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 45 - 360
Target Start/End: Original strand, 14324501 - 14324816
Alignment:
Q  45 cgcgcgcataaggttcttcttctcaaccaacgaaacaatatgaaccaagtgccaatcttcccataaatcctcaatttatggaagaaccagatgtcaaaga 144  Q
    |||||| | |||||||||||||||||||||| |||||| ||||||||| || |||||| ||||||||| |||| ||||||||||||||||| ||||  ||    
T  14324501 cgcgcgtagaaggttcttcttctcaaccaacaaaacaacatgaaccaaatgtcaatctccccataaatactcagtttatggaagaaccagacgtcaggga 14324600  T
Q  145 agcttaagacaaaatctggaaatcccaggtaatcattccatgccctaactcatcgcatgcatacctaggacctttgccggatgatcctaaagacttag-a 243  Q
    |||| |||||||||| ||||||||||||||||||||  ||||||| ||||||||||||||||||||||| ||||||||||| ||  |  | || | || |    
T  14324601 agctgaagacaaaatatggaaatcccaggtaatcatctcatgcccaaactcatcgcatgcatacctagggcctttgccggacgactccgacga-tcagaa 14324699  T
Q  244 aaaactcaacgctgtttttccttgtagtgagggacaattacacctcattttttcaaaaggtccttacgacctaagttttctgaaatccaagtttaggact 343  Q
    ||||||  ||||||||||||||||||  |||| |||| | |  || ||||| |||||||||||  | |||||||||||| ||||||| || |||||||||    
T  14324700 aaaactagacgctgtttttccttgtaacgaggcacaactgcctcttattttctcaaaaggtccacatgacctaagttttttgaaatctaaatttaggact 14324799  T
Q  344 gagccaaaaatagaaaa 360  Q
    || || || ||||||||    
T  14324800 gaacctaagatagaaaa 14324816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 156 - 360
Target Start/End: Original strand, 18160343 - 18160547
Alignment:
Q  156 aaatctggaaatcccaggtaatcattccatgccctaactcatcgcatgcatacctaggacctttgccggatgatcctaaagacttagaaaaactcaacgc 255  Q
    |||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||| ||||||||||||||  |  | ||    || ||||| ||| |    
T  18160343 aaatctggaaatcccaggtaatcatctcatgcccaaactcatcgcatgcatacctagggcctttgccggatgactccgatgatcaggataaactaaacac 18160442  T
Q  256 tgtttttccttgtagtgagggacaattacacctcattttttcaaaaggtccttacgacctaagttttctgaaatccaagtttaggactgagccaaaaata 355  Q
    ||||||||||||||| |||| |||| | |  |||||||| ||||||||||| || |||||||||||  ||||||| |||||||| || || || || |||    
T  18160443 tgtttttccttgtagcgaggaacaactgcctctcattttctcaaaaggtccatatgacctaagtttcttgaaatctaagtttagaaccgaacccaagata 18160542  T
Q  356 gaaaa 360  Q
    |||||    
T  18160543 gaaaa 18160547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 138 - 206
Target Start/End: Original strand, 10828767 - 10828835
Alignment:
Q  138 tcaaagaagcttaagacaaaatctggaaatcccaggtaatcattccatgccctaactcatcgcatgcat 206  Q
    ||||||||||| | || |||||||||||||||||||||||||||||||||||||| ||| |||||||||    
T  10828767 tcaaagaagctgatgataaaatctggaaatcccaggtaatcattccatgccctaattcaccgcatgcat 10828835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 138 - 206
Target Start/End: Original strand, 11022559 - 11022627
Alignment:
Q  138 tcaaagaagcttaagacaaaatctggaaatcccaggtaatcattccatgccctaactcatcgcatgcat 206  Q
    ||||||||||| | || |||||||||||||||||||||||||||||||||||||| ||| |||||||||    
T  11022559 tcaaagaagctgatgataaaatctggaaatcccaggtaatcattccatgccctaattcaccgcatgcat 11022627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 156 - 206
Target Start/End: Complemental strand, 10863300 - 10863250
Alignment:
Q  156 aaatctggaaatcccaggtaatcattccatgccctaactcatcgcatgcat 206  Q
    ||||||||||||||||||||||||||||||||||||| ||| |||||||||    
T  10863300 aaatctggaaatcccaggtaatcattccatgccctaattcaccgcatgcat 10863250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 354
Target Start/End: Original strand, 13347506 - 13347570
Alignment:
Q  290 attttttcaaaaggtccttacgacctaagttttctgaaatccaagtttaggactgagccaaaaat 354  Q
    |||||| | ||||||||||| |||||||||||  |||||||||| |||||||| ||||| |||||    
T  13347506 atttttaccaaaggtccttatgacctaagtttcttgaaatccaaatttaggacagagcccaaaat 13347570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 143 - 206
Target Start/End: Original strand, 13347359 - 13347422
Alignment:
Q  143 gaagcttaagacaaaatctggaaatcccaggtaatcattccatgccctaactcatcgcatgcat 206  Q
    |||||| |||| ||||||||||||||||||||||||||  ||| |||||| ||| | |||||||    
T  13347359 gaagctgaagataaaatctggaaatcccaggtaatcatctcataccctaattcaccacatgcat 13347422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 121; Significance: 6e-62; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 41 - 360
Target Start/End: Complemental strand, 10170496 - 10170177
Alignment:
Q  41 atgacgcgcgcataaggttcttcttctcaaccaacgaaacaatatgaaccaagtgccaatcttcccataaatcctcaatttatggaagaaccagatgtca 140  Q
    |||||| ||||  ||||||||||||||||| |||| |||||  ||||||||| || |||||||| |  |||||||||||||||||||||||| ||||| |    
T  10170496 atgacgtgcgctgaaggttcttcttctcaatcaacaaaacagcatgaaccaaatgtcaatcttctcggaaatcctcaatttatggaagaaccggatgtta 10170397  T
Q  141 aagaagcttaagacaaaatctggaaatcccaggtaatcattccatgccctaactcatcgcatgcatacctaggacctttgccggatgatcctaaagactt 240  Q
    |||||||| |||||||||| ||||||||||||||||||||  ||||||| || |||||||||||||||||| | ||||||||||||||  |  | || |     
T  10170396 aagaagctgaagacaaaatatggaaatcccaggtaatcatctcatgcccaaattcatcgcatgcatacctaaggcctttgccggatgactccgacga-tc 10170298  T
Q  241 ag-aaaaactcaacgctgtttttccttgtagtgagggacaattacacctcattttttcaaaaggtccttacgacctaagttttctgaaatccaagtttag 339  Q
    || ||||||| ||| |||||||||||||||| |||| |||| | |  |||||||| ||||||||||| || |||||||| ||| ||||||||||||||||    
T  10170297 agaaaaaacttaacactgtttttccttgtagcgaggaacaactgcctctcattttctcaaaaggtccatatgacctaagctttttgaaatccaagtttag 10170198  T
Q  340 gactgagccaaaaatagaaaa 360  Q
     || || || || ||||||||    
T  10170197 aaccgaacccaagatagaaaa 10170177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 54 - 360
Target Start/End: Original strand, 14683946 - 14684252
Alignment:
Q  54 aaggttcttcttctcaaccaacgaaacaatatgaaccaagtgccaatcttcccataaatcctcaatttatggaagaaccagatgtcaaagaagcttaaga 153  Q
    ||||||||||||||||||||||||||||| | ||||||| || |||||||||| ||||| |||| || |||||||||||||| |||| ||||||| ||||    
T  14683946 aaggttcttcttctcaaccaacgaaacaacacgaaccaaatgtcaatcttcccgtaaatactcagttcatggaagaaccagacgtcagagaagctgaaga 14684045  T
Q  154 caaaatctggaaatcccaggtaatcattccatgccctaactcatcgcatgcatacctaggacctttgccggatgatcctaaagacttag-aaaaactcaa 252  Q
    || ||||||||||||||||||||||||  |||||||  |||||||||||||||||||||| ||||||||||| ||| |  | || | || |||||||  |    
T  14684046 cagaatctggaaatcccaggtaatcatctcatgcccagactcatcgcatgcatacctagggcctttgccggacgattccgacga-tcagaaaaaactaga 14684144  T
Q  253 cgctgtttttccttgtagtgagggacaattacacctcattttttcaaaaggtccttacgacctaagttttctgaaatccaagtttaggactgagccaaaa 352  Q
    | | |||||||||||||  |||| |||||| |  || ||||| ||||||||||| || ||||||| |||| |||| ||||| ||||||||||| || ||     
T  14684145 caccgtttttccttgtaacgaggcacaattgcctcttattttctcaaaaggtccatatgacctaacttttttgaagtccaaatttaggactgaacccaag 14684244  T
Q  353 atagaaaa 360  Q
    ||||||||    
T  14684245 atagaaaa 14684252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 119 - 357
Target Start/End: Original strand, 12022395 - 12022633
Alignment:
Q  119 tttatggaagaaccagatgtcaaagaagcttaagacaaaatctggaaatcccaggtaatcattccatgccctaactcatcgcatgcatacctaggacctt 218  Q
    ||||| ||||||||||||||||| |||||  |||| ||||||| ||||||||||||||||||  ||||||||||||||||||||||||| ||||| ||||    
T  12022395 tttattgaagaaccagatgtcaaggaagcggaagataaaatctagaaatcccaggtaatcatctcatgccctaactcatcgcatgcatatctagggcctt 12022494  T
Q  219 tgccggatgatcctaaagacttagaaaaactcaacgctgtttttccttgtagtgagggacaattacacctcattttttcaaaaggtccttacgacctaag 318  Q
    |||| || |||||  |||||||||| |||||||| | |||||| ||||||   |||||||| ||||  |||||||| |||||||||||||| ||||| ||    
T  12022495 tgccagacgatcccgaagacttagataaactcaatgatgttttcccttgtgtagagggacatttacctctcattttctcaaaaggtccttatgacctgag 12022594  T
Q  319 ttttctgaaatccaagtttaggactgagccaaaaataga 357  Q
    ||||||||||||||| |||||||||| ||| | ||||||    
T  12022595 ttttctgaaatccaaatttaggactgggcctataataga 12022633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 45 - 361
Target Start/End: Original strand, 7342252 - 7342568
Alignment:
Q  45 cgcgcgcataaggttcttcttctcaaccaacgaaacaatatgaaccaagtgccaatcttcccataaatcctcaatttatggaagaaccagatgtcaaaga 144  Q
    |||||| | |||| |||||||||||||||||||||||| ||||||||| || |||||| |||| |||| |||| ||||||||||||||||| || |||||    
T  7342252 cgcgcgtagaaggctcttcttctcaaccaacgaaacaacatgaaccaaatgtcaatctccccaaaaatactcagtttatggaagaaccagacgttaaaga 7342351  T
Q  145 agcttaagacaaaatctggaaatcccaggtaatcattccatgccctaactcatcgcatgcatacctaggacctttgccggatgatcctaaagacttag-a 243  Q
    |||| | |||||||||||||||||||| ||||||||  ||||||| |||||||| |||||||||||||| ||||||| ||| |   |  | || | || |    
T  7342352 agctgaggacaaaatctggaaatcccatgtaatcatctcatgcccaaactcatcacatgcatacctagggcctttgctggacggctccgacga-tcagaa 7342450  T
Q  244 aaaactcaacgctgtttttccttgtagtgagggacaattacacctcattttttcaaaaggtccttacgacctaagttttctgaaatccaagtttaggact 343  Q
    ||||||  ||||||||||||||||||  |||| |||||| |  || ||||| ||||||||||| || |||||||||||| ||||||| || |||||||||    
T  7342451 aaaactagacgctgtttttccttgtaacgaggcacaattgcctcttattttctcaaaaggtccatatgacctaagttttttgaaatctaaatttaggact 7342550  T
Q  344 gagccaaaaatagaaaat 361  Q
    || || || |||||||||    
T  7342551 gaacccaagatagaaaat 7342568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 54 - 228
Target Start/End: Complemental strand, 10791843 - 10791669
Alignment:
Q  54 aaggttcttcttctcaaccaacgaaacaatatgaaccaagtgccaatcttcccataaatcctcaatttatggaagaaccagatgtcaaagaagcttaaga 153  Q
    ||||||||||||||||| ||| ||| ||| | ||| ||| |||||||||| |||||||| |||| ||||||||||||||||| |||||||||||| ||||    
T  10791843 aaggttcttcttctcaatcaatgaagcaacaagaaacaaatgccaatctttccataaatactcagtttatggaagaaccagacgtcaaagaagctaaaga 10791744  T
Q  154 caaaatctggaaatcccaggtaatcattccatgccctaactcatcgcatgcatacctaggacctttgccggatga 228  Q
    || ||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||| ||||||||||||||    
T  10791743 cagaatctggaaatcccaggtaattattccatgctcaaactcatcgcatgcatacctagggcctttgccggatga 10791669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 119 - 360
Target Start/End: Original strand, 12845530 - 12845771
Alignment:
Q  119 tttatggaagaaccagatgtcaaagaagcttaagacaaaatctggaaatcccaggtaatcattccatgccctaactcatcgcatgcatacctaggacctt 218  Q
    ||||| ||||||||||| ||||  |||||  |||||||||| ||||||||||||||||||||  |||||||||| ||||| |||||||| ||||| || |    
T  12845530 tttatagaagaaccagacgtcagggaagcggaagacaaaatatggaaatcccaggtaatcatctcatgccctaattcatcacatgcatatctaggcccct 12845629  T
Q  219 tgccggatgatcctaaagacttagaaaaactcaacgctgtttttccttgtagtgagggacaattacacctcattttttcaaaaggtccttacgacctaag 318  Q
    |||| || || ||  |||||||||| ||||| |  |||||||| |||||   ||||||||| ||||  ||||| ||  | ||||||||||| ||||| ||    
T  12845630 tgccagacgaacccgaagacttagagaaacttagtgctgttttcccttgcgctgagggacagttacctctcatcttcaccaaaggtccttatgacctgag 12845729  T
Q  319 ttttctgaaatccaagtttaggactgagccaaaaatagaaaa 360  Q
    |||||| |||| ||| ||||| | |||||| |||||||||||    
T  12845730 ttttctaaaattcaaatttagtattgagcctaaaatagaaaa 12845771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 290 - 360
Target Start/End: Complemental strand, 10791607 - 10791537
Alignment:
Q  290 attttttcaaaaggtccttacgacctaagttttctgaaatccaagtttaggactgagccaaaaatagaaaa 360  Q
    ||||| || |||||||| || ||||||||||||||||||||||| ||||||||||| || |||||||||||    
T  10791607 attttctccaaaggtccatatgacctaagttttctgaaatccaaatttaggactgaacccaaaatagaaaa 10791537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 122 - 360
Target Start/End: Original strand, 152251 - 152489
Alignment:
Q  122 atggaagaaccagatgtcaaagaagcttaagacaaaatctggaaatcccaggtaatcattccatgccctaactcatcgcatgcatacctaggacctttgc 221  Q
    ||||||||||||||  ||||||||||| ||||  |||||||||||||||| ||||| ||  ||||||| ||||||||||||||||||||||| |||||||    
T  152251 atggaagaaccagacatcaaagaagctgaagatgaaatctggaaatcccaagtaattatctcatgccccaactcatcgcatgcatacctagggcctttgc 152350  T
Q  222 cggatgatcctaaagacttagaaaaactcaacgctgtttttccttgtagtgagggacaattacacctcattttttcaaaaggtccttacgacctaagttt 321  Q
    |||||||  |  ||||  | |||||||| |  |||||||| ||||||| ||||| ||| ||||  ||||||||||||||||||||||| |||||||||||    
T  152351 cggatgactccgaagatctggaaaaactaagtgctgttttcccttgtaatgaggcacagttacctctcattttttcaaaaggtccttatgacctaagttt 152450  T
Q  322 tctgaaatccaagtttaggactgagccaaaaatagaaaa 360  Q
    | ||||||||| ||||||||||||||| |||||||||||    
T  152451 tttgaaatccatgtttaggactgagcctaaaatagaaaa 152489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 150 - 357
Target Start/End: Complemental strand, 30106 - 29899
Alignment:
Q  150 aagacaaaatctggaaatcccaggtaatcattccatgccctaactcatcgcatgcatacctaggacctttgccggatgatcctaaagacttagaaaaact 249  Q
    |||| ||||||| ||||||||||||||||||  ||||||| ||||||| | ||||||| ||||| || ||||  ||||||||  || |||||||||||||    
T  30106 aagataaaatctagaaatcccaggtaatcatctcatgccccaactcatagtatgcataactagggcccttgcgagatgatccctaatacttagaaaaact 30007  T
Q  250 caacgctgtttttccttgtagtgagggacaattacacctcattttttcaaaaggtccttacgacctaagttttctgaaatccaagtttaggactgagcca 349  Q
    |||||||||||| ||||||| ||||||||||||||  |||||||| |||||||||||||| ||||| |||||| |||||||||||||||||||||||||     
T  30006 caacgctgttttcccttgtaatgagggacaattacctctcattttctcaaaaggtccttatgacctgagttttttgaaatccaagtttaggactgagcct 29907  T
Q  350 aaaataga 357  Q
    ||||||||    
T  29906 aaaataga 29899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 111; Significance: 6e-56; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 122 - 360
Target Start/End: Complemental strand, 28432 - 28194
Alignment:
Q  122 atggaagaaccagatgtcaaagaagcttaagacaaaatctggaaatcccaggtaatcattccatgccctaactcatcgcatgcatacctaggacctttgc 221  Q
    ||||||||||||||  ||||||||| | |||| ||||||||||||||||||||||| ||  | || || ||||||||||||||||||||||| ||||||     
T  28432 atggaagaaccagacatcaaagaaggtgaagataaaatctggaaatcccaggtaattatctcgtgtcccaactcatcgcatgcatacctagggcctttgt 28333  T
Q  222 cggatgatcctaaagacttagaaaaactcaacgctgtttttccttgtagtgagggacaattacacctcattttttcaaaaggtccttacgacctaagttt 321  Q
    || ||||  || | ||    ||||||||||| | |||||| ||||||| |||||||||||||| |||||||||||||||||||||||| |||||||||||    
T  28332 cgcatgactctgacgatccggaaaaactcaatgttgttttcccttgtaatgagggacaattacccctcattttttcaaaaggtccttatgacctaagttt 28233  T
Q  322 tctgaaatccaagtttaggactgagccaaaaatagaaaa 360  Q
    | ||||||| | ||||||||||||||| |||||||||||    
T  28232 tttgaaatctatgtttaggactgagcctaaaatagaaaa 28194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0130 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: scaffold0130
Description:

Target: scaffold0130; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 115 - 360
Target Start/End: Original strand, 30176 - 30421
Alignment:
Q  115 tcaatttatggaagaaccagatgtcaaagaagcttaagacaaaatctggaaatcccaggtaatcattccatgccctaactcatcgcatgcatacctagga 214  Q
    |||||| ||||||||||| ||  ||||||||||| |||| ||||||||||||||||||||||| ||  | ||||| |||||||||||||||||||||||     
T  30176 tcaattcatggaagaaccggacatcaaagaagctgaagataaaatctggaaatcccaggtaattatctcctgcccaaactcatcgcatgcatacctaggg 30275  T
Q  215 cctttgccggatgatcctaaagacttagaaaaactcaacgctgtttttccttgtagtgagggacaattacacctcattttttcaaaaggtccttacgacc 314  Q
    ||||||||||||||     | ||  | ||||||||||| | |||||| ||||||| ||||| ||| || | |||||||||||||||||||||||| ||||    
T  30276 cctttgccggatgactgcgatgatctggaaaaactcaatgttgttttcccttgtaatgaggaacagtttcccctcattttttcaaaaggtccttatgacc 30375  T
Q  315 taagttttctgaaatccaagtttaggactgagccaaaaatagaaaa 360  Q
    ||||| || ||||||||||||||||||| ||||| |||||||||||    
T  30376 taagtgttttgaaatccaagtttaggaccgagcctaaaatagaaaa 30421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0239 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: scaffold0239
Description:

Target: scaffold0239; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 119 - 357
Target Start/End: Original strand, 17927 - 18165
Alignment:
Q  119 tttatggaagaaccagatgtcaaagaagcttaagacaaaatctggaaatcccaggtaatcattccatgccctaactcatcgcatgcatacctaggacctt 218  Q
    ||||| ||||||||||||||||| |||||  |||| ||||||||||||||||||||||||||  |||| ||||| |||||||||||||| ||||| ||||    
T  17927 tttatagaagaaccagatgtcaaggaagcggaagataaaatctggaaatcccaggtaatcatctcatgtcctaattcatcgcatgcatatctagggcctt 18026  T
Q  219 tgccggatgatcctaaagacttagaaaaactcaacgctgtttttccttgtagtgagggacaattacacctcattttttcaaaaggtccttacgacctaag 318  Q
    |||  || || ||  |||||||||| ||||||||||||||||| ||||||   |||||||| ||||   |||| || |||||||||||||| ||||| ||    
T  18027 tgctagacgaccccgaagacttagataaactcaacgctgttttcccttgtgtagagggacagttacctatcatcttctcaaaaggtccttatgacctgag 18126  T
Q  319 ttttctgaaatccaagtttaggactgagccaaaaataga 357  Q
    |||| |||||||||| |||||||||||||| ||||||||    
T  18127 ttttttgaaatccaaatttaggactgagcctaaaataga 18165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 106; Significance: 6e-53; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 41 - 361
Target Start/End: Complemental strand, 21529669 - 21529346
Alignment:
Q  41 atgacgcgcgcataaggttcttcttctcaaccaacgaaacaatatgaaccaagtgc---caatcttcccataaatcctcaatttatggaagaaccagatg 137  Q
    |||||||||||  ||||||||||||||||| |||| |||||| ||||||||| ||    ||| |||| |  ||||| |||||||||||||||| | |||     
T  21529669 atgacgcgcgctgaaggttcttcttctcaatcaacaaaacaacatgaaccaactgatatcaaccttcgcggaaatcttcaatttatggaagaatcggata 21529570  T
Q  138 tcaaagaagcttaagacaaaatctggaaatcccaggtaatcattccatgccctaactcatcgcatgcatacctaggacctttgccggatgatcctaaaga 237  Q
    |||||||| || |||||||||||||||||||||||||||| ||  ||||||| || |||||||||||||||||||| ||||||||||||||  || | ||    
T  21529569 tcaaagaaactgaagacaaaatctggaaatcccaggtaattatctcatgcccaaattcatcgcatgcatacctagggcctttgccggatgactctgatga 21529470  T
Q  238 cttagaaaaactcaacgctgtttttccttgtagtgagggacaattacacctcattttttcaaaaggtccttacgacctaagttttctgaaatccaagttt 337  Q
        ||||| ||||| | |||||| ||||||| ||||| |||||  | ||| ||||||||||||||| | || |||||||||||| |||||||||| |||    
T  21529469 tcaggaaaatctcaatgttgttttcccttgtaatgaggaacaatcgccccttattttttcaaaaggttcgtatgacctaagttttttgaaatccaaattt 21529370  T
Q  338 aggactgagccaaaaatagaaaat 361  Q
    || || || || || |||||||||    
T  21529369 agaaccgaacctaagatagaaaat 21529346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 41 - 339
Target Start/End: Complemental strand, 57856 - 57558
Alignment:
Q  41 atgacgcgcgcataaggttcttcttctcaaccaacgaaacaatatgaaccaagtgccaatcttcccataaatcctcaatttatggaagaaccagatgtca 140  Q
    |||||||||||  |||| ||||||||| |  |||||||| |  ||||||||| |  ||||||||| | |||||||||||||||||||||||| ||||| |    
T  57856 atgacgcgcgctgaaggctcttcttcttattcaacgaaatagcatgaaccaaatatcaatcttccaaaaaatcctcaatttatggaagaaccggatgtaa 57757  T
Q  141 aagaagcttaagacaaaatctggaaatcccaggtaatcattccatgccctaactcatcgcatgcatacctaggacctttgccggatgatcctaaagactt 240  Q
    |||||||| |||||||||| ||||||||||||||||||||  ||||||| || |||||||||||||||||||| ||||||||||||||  |  | ||       
T  57756 aagaagctgaagacaaaatttggaaatcccaggtaatcatctcatgcccaaattcatcgcatgcatacctagggcctttgccggatgactccgatgatca 57657  T
Q  241 agaaaaactcaacgctgtttttccttgtagtgagggacaattacacctcattttttcaaaaggtccttacgacctaagttttctgaaatccaagtttag 339  Q
     ||| |||| ||  | |||||||||||||| |||| |||||| |  || ||||| ||||||||||| || |||||||||||| ||||||| || |||||    
T  57656 ggaagaactaaatacagtttttccttgtagcgaggaacaattgcctcttattttctcaaaaggtccatatgacctaagttttttgaaatctaaatttag 57558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0081 (Bit Score: 99; Significance: 8e-49; HSPs: 2)
Name: scaffold0081
Description:

Target: scaffold0081; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 114 - 360
Target Start/End: Original strand, 45074 - 45320
Alignment:
Q  114 ctcaatttatggaagaaccagatgtcaaagaagcttaagacaaaatctggaaatcccaggtaatcattccatgccctaactcatcgcatgcatacctagg 213  Q
    ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||  ||||||| || ||||||||||||||||||||    
T  45074 ctcaatttatggaagaaccggatgtcaaagaagctgaagacaaaatctggaaatcccaggtaattatctcatgcccaaattcatcgcatgcatacctagg 45173  T
Q  214 acctttgccggatgatcctaaagacttagaaaaactcaacgctgtttttccttgtagtgagggacaattacacctcattttttcaaaaggtccttacgac 313  Q
     ||||||||||||||  || | ||    ||||| ||||| |||||||| ||||||| ||||| ||| |    ||| ||||||||||||||||  || |||    
T  45174 gcctttgccggatgactctgatgatcaggaaaatctcaatgctgttttcccttgtaatgaggaacactcgtcccttattttttcaaaaggtctgtatgac 45273  T
Q  314 ctaagttttctgaaatccaagtttaggactgagccaaaaatagaaaa 360  Q
    ||||| ||| |||||||||| ||||| || ||||| || ||||||||    
T  45274 ctaagctttttgaaatccaaatttagaaccgagcctaagatagaaaa 45320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0081; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 41 - 92
Target Start/End: Original strand, 45022 - 45073
Alignment:
Q  41 atgacgcgcgcataaggttcttcttctcaaccaacgaaacaatatgaaccaa 92  Q
    |||||||||||  ||||||||||||||||| |||| ||||||||||||||||    
T  45022 atgacgcgcgctgaaggttcttcttctcaatcaacaaaacaatatgaaccaa 45073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0241 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: scaffold0241
Description:

Target: scaffold0241; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 101 - 361
Target Start/End: Complemental strand, 24387 - 24127
Alignment:
Q  101 cttcccataaatcctcaatttatggaagaaccagatgtcaaagaagcttaagacaaaatctggaaatcccaggtaatcattccatgccctaactcatcgc 200  Q
    |||| |||||||| |||||||||||||||||| ||| ||||||||||| |||||||||||||||||||| ||||||| ||  |||| || || |||||||    
T  24387 cttcgcataaatcttcaatttatggaagaaccggatatcaaagaagctgaagacaaaatctggaaatcctaggtaattatctcatgtccaaattcatcgc 24288  T
Q  201 atgcatacctaggacctttgccggatgatcctaaagacttagaaaaactcaacgctgtttttccttgtagtgagggacaattacacctcattttttcaaa 300  Q
    ||||||||||||| ||||||||||||||  |    ||    ||||| |||||  ||||||| ||||||| ||||| |||||| | ||| |||||||||||    
T  24287 atgcatacctagggcctttgccggatgactccggcgatcaggaaaatctcaatactgttttcccttgtaatgaggaacaattgccccttattttttcaaa 24188  T
Q  301 aggtccttacgacctaagttttctgaaatccaagtttaggactgagccaaaaatagaaaat 361  Q
    |||||| || |||||||| ||| |||||||||| ||||| || || || || |||||||||    
T  24187 aggtccatatgacctaagctttttgaaatccaaatttagaaccgaacctaagatagaaaat 24127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0193 (Bit Score: 91; Significance: 5e-44; HSPs: 2)
Name: scaffold0193
Description:

Target: scaffold0193; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 114 - 360
Target Start/End: Original strand, 27589 - 27835
Alignment:
Q  114 ctcaatttatggaagaaccagatgtcaaagaagcttaagacaaaatctggaaatcccaggtaatcattccatgccctaactcatcgcatgcatacctagg 213  Q
    ||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||| ||  ||||||| || ||||||||||||||||||||    
T  27589 ctcaatttatggaagaaccggatgtcaatgaagctgaagacaaaatctggaaatcccaggtaattatctcatgcccaaattcatcgcatgcatacctagg 27688  T
Q  214 acctttgccggatgatcctaaagacttagaaaaactcaacgctgtttttccttgtagtgagggacaattacacctcattttttcaaaaggtccttacgac 313  Q
     |||||| |||||||  || | ||    ||||| ||||| | |||||| ||||||| ||||| ||| |  |  || ||||||||||||||||| || |||    
T  27689 gcctttgtcggatgactctgatgatcaggaaaatctcaatgttgttttcccttgtaatgaggaacactcgcctcttattttttcaaaaggtccgtatgac 27788  T
Q  314 ctaagttttctgaaatccaagtttaggactgagccaaaaatagaaaa 360  Q
    ||||| ||| |||||||||| ||||| || ||||| || ||||||||    
T  27789 ctaagctttttgaaatccaaatttagaaccgagcctaagatagaaaa 27835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0193; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 41 - 92
Target Start/End: Original strand, 27537 - 27588
Alignment:
Q  41 atgacgcgcgcataaggttcttcttctcaaccaacgaaacaatatgaaccaa 92  Q
    |||||||||||  ||||||||||||||||| ||| ||||||| |||||||||    
T  27537 atgacgcgcgctgaaggttcttcttctcaatcaatgaaacaacatgaaccaa 27588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 25 - 360
Target Start/End: Original strand, 119049 - 119387
Alignment:
Q  25 aaaaatttgaatctctatgacgcgcgcataaggttcttcttctcaaccaacgaaacaatatgaaccaagtg---ccaatcttcccataaatcctcaattt 121  Q
    ||||| ||| ||||| || ||||||||  ||||||| ||||||||  |||| |||||  ||||||||| ||   |||| | || |  ||||| ||| ||     
T  119049 aaaaaattgtatctccataacgcgcgctgaaggttcatcttctcagacaacaaaacatcatgaaccaactgatcccaaacctcgcggaaatcttcagttc 119148  T
Q  122 atggaagaaccagatgtcaaagaagcttaagacaaaatctggaaatcccaggtaatcattccatgccctaactcatcgcatgcatacctaggacctttgc 221  Q
    |||||||||   ||| ||||||||||| | || ||||||||||||||||||||||| ||  |||| || ||||||||||||||||||||||| |||||||    
T  119149 atggaagaattggatatcaaagaagctgaggataaaatctggaaatcccaggtaattatctcatgtccaaactcatcgcatgcatacctagggcctttgc 119248  T
Q  222 cggatgatcctaaagacttagaaaaactcaacgctgtttttccttgtagtgagggacaattacacctcattttttcaaaaggtccttacgacctaagttt 321  Q
    |||||||  |  | ||    |||||||||||  ||||||||||||| | ||||| ||| |||| ||||||||||||||||||||| || |||||||| ||    
T  119249 cggatgactccgacgatcaggaaaaactcaatactgtttttccttgaaatgaggaacagttacccctcattttttcaaaaggtccgtatgacctaagctt 119348  T
Q  322 tctgaaatccaagtttaggactgagccaaaaatagaaaa 360  Q
    | |||||||||| ||||| || || || || ||||||||    
T  119349 tttgaaatccaaatttagaaccgaacctaagatagaaaa 119387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 115 - 357
Target Start/End: Complemental strand, 119112 - 118870
Alignment:
Q  115 tcaatttatggaagaaccagatgtcaaagaagcttaagacaaaatctggaaatcccaggtaatcattccatgccctaactcatcgcatgcatacctagga 214  Q
    |||||| |||||||||||||| || |  |||||  |||| |||||||||| |||||||||||||||  |||||||||||||| | ||||||||| ||||     
T  119112 tcaattcatggaagaaccagacgttagggaagcggaagataaaatctggagatcccaggtaatcatctcatgccctaactcaccacatgcatacttaggg 119013  T
Q  215 cctttgccggatgatcctaaagacttagaaaaactcaacgctgtttttccttgtagtgagggacaattacacctcattttttcaaaaggtccttacgacc 314  Q
    ||| | || |||||  |  |||| ||||| || || |  | ||||||||| | |  | ||| |||||| |   | || ||  ||||||||||||||||||    
T  119012 cctctaccagatgaatcggaagatttagagaagcttagtgatgtttttccctattctaaggaacaatttcctttgatcttcacaaaaggtccttacgacc 118913  T
Q  315 taagttttctgaaatccaagtttaggactgagccaaaaataga 357  Q
    |||||||||| |||||||| |||||||||||||| ||||||||    
T  118912 taagttttctaaaatccaaatttaggactgagcctaaaataga 118870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 115 - 357
Target Start/End: Complemental strand, 126956 - 126714
Alignment:
Q  115 tcaatttatggaagaaccagatgtcaaagaagcttaagacaaaatctggaaatcccaggtaatcattccatgccctaactcatcgcatgcatacctagga 214  Q
    |||||| |||||||||| ||| || |  |||||  |||| ||||||||||||||||||||||||||  |||||||||||||| | ||||||||| ||||     
T  126956 tcaattcatggaagaactagacgttagggaagcggaagataaaatctggaaatcccaggtaatcatctcatgccctaactcacctcatgcatacttaggg 126857  T
Q  215 cctttgccggatgatcctaaagacttagaaaaactcaacgctgtttttccttgtagtgagggacaattacacctcattttttcaaaaggtccttacgacc 314  Q
    ||| | || |||||  |  |||| ||||| || || |  | ||||||||  | |  |  || ||| ||||   | || ||  | ||||||||||||||||    
T  126856 cctctaccagatgaatcagaagatttagagaagcttagtgatgtttttcactattctatggaacagttacctttgatcttcacgaaaggtccttacgacc 126757  T
Q  315 taagttttctgaaatccaagtttaggactgagccaaaaataga 357  Q
    |||||||||| |||||||| |||||||||||||| ||||||||    
T  126756 taagttttctaaaatccaaatttaggactgagcctaaaataga 126714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0156 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0156
Description:

Target: scaffold0156; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 110 - 192
Target Start/End: Original strand, 19154 - 19236
Alignment:
Q  110 aatcctcaatttatggaagaaccagatgtcaaagaagcttaagacaaaatctggaaatcccaggtaatcattccatgccctaa 192  Q
    |||| |||||| ||||| |||||||||||||| |||||| | || ||||||||||||||||||||||||||||||||||||||    
T  19154 aatcttcaattcatggaggaaccagatgtcaaggaagctgaggaaaaaatctggaaatcccaggtaatcattccatgccctaa 19236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 115 - 357
Target Start/End: Original strand, 71694 - 71936
Alignment:
Q  115 tcaatttatggaagaaccagatgtcaaagaagcttaagacaaaatctggaaatcccaggtaatcattccatgccctaactcatcgcatgcatacctagga 214  Q
    |||||| |||||||||||||| ||| | |||||  |||| ||||||||||||||||||||||| |   |||||||||||||| | ||||||||| ||||     
T  71694 tcaattcatggaagaaccagacgtccaggaagcggaagataaaatctggaaatcccaggtaattagctcatgccctaactcaccacatgcatacttaggg 71793  T
Q  215 cctttgccggatgatcctaaagacttagaaaaactcaacgctgtttttccttgtagtgagggacaattacacctcattttttcaaaaggtccttacgacc 314  Q
    ||| | |  |||||  |  |||| ||||| || || |  | ||||||||| | |  |  || ||||||||   | || ||  ||||||||||||||||||    
T  71794 cctctactagatgaatcagaagatttagagaagcttagtgatgtttttccctattctatggaacaattacctttgatcttcacaaaaggtccttacgacc 71893  T
Q  315 taagttttctgaaatccaagtttaggactgagccaaaaataga 357  Q
    |||||||||| |||| ||| |||||||||||||| ||||||||    
T  71894 taagttttctaaaattcaaatttaggactgagcctaaaataga 71936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 115 - 206
Target Start/End: Complemental strand, 8563 - 8472
Alignment:
Q  115 tcaatttatggaagaaccagatgtcaaagaagcttaagacaaaatctggaaatcccaggtaatcattccatgccctaactcatcgcatgcat 206  Q
    |||||||||||||||||||||  |||| |||||| | || ||||||||||||||||||||||| ||  | |||||||||||| | |||||||    
T  8563 tcaatttatggaagaaccagacatcaaggaagctgaggataaaatctggaaatcccaggtaattatctcgtgccctaactcaccacatgcat 8472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 354
Target Start/End: Complemental strand, 8378 - 8324
Alignment:
Q  300 aaggtccttacgacctaagttttctgaaatccaagtttaggactgagccaaaaat 354  Q
    |||||||||| |||||||||||  ||||||| || |||||||||||||| |||||    
T  8378 aaggtccttatgacctaagtttcttgaaatctaaatttaggactgagcctaaaat 8324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 357
Target Start/End: Complemental strand, 6592 - 6350
Alignment:
Q  115 tcaatttatggaagaaccagatgtcaaagaagcttaagacaaaatctggaaatcccaggtaatcattccatgccctaactcatcgcatgcatacctagga 214  Q
    |||||| ||||||||||| ||  |||| ||| || | || ||||||||||||||||| ||||| ||  | |||||||||||| | ||||||||  || |     
T  6592 tcaattcatggaagaaccggacatcaaggaacctgaggataaaatctggaaatcccatgtaattatctcgtgccctaactcaccacatgcatatttaagg 6493  T
Q  215 cctttgccggatgatcctaaagacttagaaaaactcaacgctgtttttccttgtagtgagggacaattacacctcattttttcaaaaggtccttacgacc 314  Q
    ||| |||| ||||| |   |||||||||| ||||| |  | |||||||||||||  ||| | ||| || | | | || ||  | ||||||||||| ||||    
T  6492 cctctgccagatgaacgagaagacttagagaaacttagtgttgtttttccttgttttgaagaacagttgcccttgatcttcaccaaaggtccttatgacc 6393  T
Q  315 taagttttctgaaatccaagtttaggactgagccaaaaataga 357  Q
    | |||||  ||||||  || |||||||||||||| ||||||||    
T  6392 tgagtttcttgaaatataaatttaggactgagcctaaaataga 6350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1898 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold1898
Description:

Target: scaffold1898; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 127 - 192
Target Start/End: Complemental strand, 490 - 425
Alignment:
Q  127 agaaccagatgtcaaagaagcttaagacaaaatctggaaatcccaggtaatcattccatgccctaa 192  Q
    ||||||||| || || ||||||||||| |  ||||||||||| ||||||||||||||||| |||||    
T  490 agaaccagaggttaaggaagcttaagaaaggatctggaaatctcaggtaatcattccatgtcctaa 425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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