View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8950_low_52 (Length: 347)
Name: NF8950_low_52
Description: NF8950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8950_low_52 |
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Alignment Details
Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 12 - 333
Target Start/End: Original strand, 4274366 - 4274687
Alignment:
| Q |
12 |
acatcaagaacacgacagaaaacatgaggtggaatattacaagcagaaacaggaaaatcatgagcttgttcaaagtgtccttgtggaacataaacaacaa |
111 |
Q |
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| T |
4274366 |
acatcaagaacacgacagaaaacatgaggtggaatattacaagcagaaacaggaaaatcatgagcttgttcaaagtgtccttgtggaacataaacaacaa |
4274465 |
T |
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| Q |
112 |
tgcttcctttctttggtaaagagatcaaaggaccagcacaagcatgccatagctccaaacaaacagaaccttgaggaggaagaggtggaggaacaaccat |
211 |
Q |
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| T |
4274466 |
tgcttcctttctttggtaaagagatcaaaggaccagcacaagcatgccatagctccaaacaaacagaaccttgaggaggaagaggtggaggaacaaccat |
4274565 |
T |
|
| Q |
212 |
agctgctgaagcagaagtgcttataccagagtgnnnnnnnnnnnnnnnnnnnnnnatagctgaatatggtgtttcatcatcctctgtagtgttgagatcg |
311 |
Q |
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| T |
4274566 |
agctgctgaagcagaagtgcttataccagagtgagaagaagaagatgaagaagaaatagctgaatatggtgtttcatcatcctctgtagtgttgagatcg |
4274665 |
T |
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| Q |
312 |
attaaccccatgtgagaaagtt |
333 |
Q |
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| T |
4274666 |
attaaccccatgtgagaaagtt |
4274687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 11 - 179
Target Start/End: Complemental strand, 34796739 - 34796568
Alignment:
| Q |
11 |
gacatcaagaacacgacagaaaacatgaggtggaatattac---aagcagaaacaggaaaatcatgagcttgttcaaagtgtccttgtggaacataaaca |
107 |
Q |
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| T |
34796739 |
gacatcaacaacacgacagaacacatgagaaggaatattatccgaaaaagataacggaaaatcatgaagatgttccaagtgtccttgagggaagtaaaca |
34796640 |
T |
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| Q |
108 |
acaatgcttcctttctttggtaaagagatcaaaggaccagcacaagcatgccatagctccaaacaaacagaa |
179 |
Q |
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| T |
34796639 |
acaacacttcctttctttggcaaagagatcataggaccagcacaagcatgccatagctccaaacacacagaa |
34796568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 34 - 100
Target Start/End: Original strand, 51992315 - 51992381
Alignment:
| Q |
34 |
catgaggtggaatattacaagcagaaacaggaaaatcatgagcttgttcaaagtgtccttgtggaac |
100 |
Q |
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| T |
51992315 |
catgaggtggaatactacgagcactaactggaaaatcatgagcttgttcaaagtgtctatgtggaac |
51992381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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