View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8950_low_54 (Length: 344)
Name: NF8950_low_54
Description: NF8950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8950_low_54 |
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Alignment Details
Target: chr6 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 12103406 - 12103083
Alignment:
| Q |
1 |
aggctcatacaaaaacggtagggatgcatacataaatcctggttgatacatacgatattttcctcgagcaatctcttcgatatttacaatggctttacta |
100 |
Q |
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| T |
12103406 |
aggctcatacaaaaacggtagggatgcatacataaatcctggttgatacatacgatattttcctcgagcaatctctttgatatttacaatggctttacta |
12103307 |
T |
|
| Q |
101 |
atactaggctggcccggaagtactagcctgaattttcgagattcattttgcagaaaatcttctatctctgcaagatagctgaatgcacatccaacagcag |
200 |
Q |
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| T |
12103306 |
acactaggctggcccggaagtactagcctgaattttcgagattcattttgcagaaaatcttctatctctgcaagatagctgaatgcacatccaacagcag |
12103207 |
T |
|
| Q |
201 |
gaaaaccatctaagttcaaccagtatgttagaaatccattcggacctactacagctgtctgtctgcattactttcactgctggcattttgtctccgttaa |
300 |
Q |
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||||||||||||||||||||| |||| ||||||||||| ||| |||||||||||||| |||||||||||||||||| |||||||| ||||||||||| |
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| T |
12103206 |
gaaaaccatctaagttcaaccggtattttagaaatccactcgtacctactacagctg----tctgcattactttcactggtggcatttcgtctccgttaa |
12103111 |
T |
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| Q |
301 |
catcaatggatacattggtcgcaatttt |
328 |
Q |
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| T |
12103110 |
catcaatggatacattggtcgcaatttt |
12103083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 114; Significance: 9e-58; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 34 - 288
Target Start/End: Original strand, 28788168 - 28788418
Alignment:
| Q |
34 |
aaatcctggttgatacatacgatattttcctcgagcaatctcttcgatatttacaatggctttactaatactaggctggcccggaagtactagcctgaat |
133 |
Q |
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||||||||||| ||| | ||||||||| | | ||||| |||||||||||||||| | ||||||||||||| || ||| || |||||||||||||||||| |
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| T |
28788168 |
aaatcctggttcataaagacgatatttgcgtagagcattctcttcgatatttaccacggctttactaatatcagcctgtcctggaagtactagcctgaat |
28788267 |
T |
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| Q |
134 |
tttcgagattcattttgcagaaaatcttctatctctgcaagatagctgaatgcacatccaacagcaggaaaaccatctaagttcaaccagtatgttagaa |
233 |
Q |
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||||||||||||||| || |||| |||||||||||||||||||||||| |||| ||||| || ||||||||||| |||||||||| ||| |||||| |
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| T |
28788268 |
tttcgagattcatttcgcggaaattcttctatctctgcaagatagctgtatgcccatccggtggctggaaaaccatccaagttcaaccggtaagttagag |
28788367 |
T |
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| Q |
234 |
atccattcggacctactacagctgtctgtctgcattactttcactgctggcattt |
288 |
Q |
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||||||| | ||||||||||| ||||||||||||||||||||| |||||||| |
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| T |
28788368 |
atccatttgtacctactacag----ctgtctgcattactttcactggtggcattt |
28788418 |
T |
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