View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8950_low_57 (Length: 330)
Name: NF8950_low_57
Description: NF8950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8950_low_57 |
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Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 46682044 - 46681733
Alignment:
| Q |
1 |
acatgaatcagtaacaaaacttttggcagaaaatggtgcaaccttgcaaattggtgatgttggtcaatatgcatgcactgcagttgaacaaaacaatttc |
100 |
Q |
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| T |
46682044 |
acatgaatcagtaacaaaacttttagcagaaaatggtgcaaccttgcaaattggggatgttggtcaatatgcatgcactgcagttgaacaaaacaatttc |
46681945 |
T |
|
| Q |
101 |
aatttattgcaagacattatgcgttacggaggagacatcacgcttccaaataacaatgttggaaccacggcgttacacgtggcagtctccgaagacaatg |
200 |
Q |
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| T |
46681944 |
aatttattgcaagacattatgcgttacggaggagacatcacgcttccaaataacaatgttggaaccacggcgttacacgtggcagtctccgaagacaatg |
46681845 |
T |
|
| Q |
201 |
ttgaaattgtcaaattcctattagaacatggtgctaacattgacaaacaagataaatatggttggagtccaagagatttagctgatcaacaaggacatac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46681844 |
ttgaaattgtcaaattcctattagaacatggtgctaacattgacaaacaagataaatatggttggagtccaagagatttagctgatcaacaaggacatac |
46681745 |
T |
|
| Q |
301 |
cggaatcaaagc |
312 |
Q |
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| T |
46681744 |
cgaaatcaaagc |
46681733 |
T |
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