View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8950_low_62 (Length: 327)
Name: NF8950_low_62
Description: NF8950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8950_low_62 |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 18 - 310
Target Start/End: Complemental strand, 27600818 - 27600513
Alignment:
| Q |
18 |
gaaacgtgttactatcatcgcaaggtatattacattatcaaaccaaaattagtttgatgcatgggtcacttaagtcctatgaccactatcaacaagctta |
117 |
Q |
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| T |
27600818 |
gaaacgtattactatcatcgcaaggtatattacattatcaaaccaaaattagtttgatg----ggtcacttaagtcctatgaacactatcaacaagctta |
27600723 |
T |
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| Q |
118 |
ttgaaattgcacttagctaagaagtttgagatatactttcttcaccaaaattatactttcttcacta-----------------ttgcttactctcctga |
200 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |
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| T |
27600722 |
ttgaaattgcacttagctaagaagtttgggatatactttcttcaccaaaattatacttttttcactatttcttggagattgaagttgcttactctcctga |
27600623 |
T |
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| Q |
201 |
tatcatctcccaatttaagtacattgtcaatattctttaacaaacctgtcttttttatactagaatggtagatagtcctattgagttgaatgtgaaatat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27600622 |
tatcatctcccaatttaagtacattgtcaatattctttaacaaacctgtcttttttatactagaatggtagatagtcctattgagttgaatgtgaaatat |
27600523 |
T |
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| Q |
301 |
gttcatttga |
310 |
Q |
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|||||||||| |
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| T |
27600522 |
gttcatttga |
27600513 |
T |
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