View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8950_low_66 (Length: 317)

Name: NF8950_low_66
Description: NF8950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8950_low_66
NF8950_low_66
[»] chr2 (1 HSPs)
chr2 (17-299)||(17925216-17925498)
[»] chr6 (5 HSPs)
chr6 (20-301)||(12956198-12956479)
chr6 (17-301)||(12946758-12947042)
chr6 (17-301)||(12905303-12905588)
chr6 (17-301)||(12897682-12897966)
chr6 (17-301)||(12930393-12930677)
[»] chr5 (9 HSPs)
chr5 (70-177)||(10742634-10742741)
chr5 (217-299)||(10764907-10764989)
chr5 (70-185)||(11049796-11049911)
chr5 (133-179)||(10718828-10718874)
chr5 (70-240)||(10609880-10610050)
chr5 (70-184)||(10748940-10749054)
chr5 (204-240)||(10549097-10549133)
chr5 (145-257)||(10557165-10557277)
chr5 (132-183)||(10563259-10563310)
[»] chr8 (1 HSPs)
chr8 (133-178)||(27725990-27726035)


Alignment Details
Target: chr2 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 17 - 299
Target Start/End: Complemental strand, 17925498 - 17925216
Alignment:
Q  17 acctgacatattgttctaatctcaaattattgtttttgagtgggaaccatctcattggtaaaataccaactgaaatcggctctttgaaaaaacttcaagc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17925498 acctgacatattgttctaatctcaaattattgtttttgagtgggaaccatctcattggtaaaataccaactgaaatcggctctttgaaaaaacttcaagc 17925399  T
Q  117 catgactgttgcgcataacaatttaactggaggaatcccttcattcataggaaatctttcatgcttaacacgtctatcagctgctcttaacaattttgag 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17925398 catgactgttgcgcataacaatttaactggaggaatcccttcattcataggaaatctttcatgcttaacacgtctatcagctgctcttaacaattttgag 17925299  T
Q  217 ggagatattccacaagaaatatgttgccgcaaacacttgacatttttagctttgggtgagaacaatttttccggtaagattcc 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17925298 ggagatattccacaagaaatatgttgccgcaaacacttgacatttttagctttgggtgagaacaatttttccggtaagattcc 17925216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 20 - 301
Target Start/End: Original strand, 12956198 - 12956479
Alignment:
Q  20 tgacatattgttctaatctcaaattattgtttttgagtgggaaccatctcattggtaaaataccaactgaaatcggctctttgaaaaaacttcaagccat 119  Q
    |||||||||| || |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||   ||    
T  12956198 tgacatattgctccaatctcaaattattgtttttgaatgggaaccatctcaatggtaaaataccaactgaaatcggctctttgaaaaagcttcaaagaat 12956297  T
Q  120 gactgttgcgcataacaatttaactggaggaatcccttcattcataggaaatctttcatgcttaacacgtctatcagctgctcttaacaattttgaggga 219  Q
    |||||||  |   ||||| |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||    
T  12956298 gactgtttggagaaacaagttaactggtggaatcccttcattcataggaaatctttcaagcttaacacgtctatcagcttctcgtaacaattttgaggga 12956397  T
Q  220 gatattccacaagaaatatgttgccgcaaacacttgacatttttagctttgggtgagaacaatttttccggtaagattcctt 301  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  12956398 gatattccacaagaaatatgttgctgcaaacacttgacatttttagctttgggtgagaacaatttgtccggtaagattcctt 12956479  T

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Target: chr6; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 17 - 301
Target Start/End: Original strand, 12946758 - 12947042
Alignment:
Q  17 acctgacatattgttctaatctcaaattattgtttttgagtgggaaccatctcattggtaaaataccaactgaaatcggctctttgaaaaaacttcaagc 116  Q
    |||||||||||||||| || |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||  |||||||    
T  12946758 acctgacatattgttccaaactcaaatttttgtttttgagtgggaaccatctcatcggtaaaataccaactgaaatcggctctttgaagaaggttcaagc 12946857  T
Q  117 catgactgttgcgcataacaatttaactggaggaatcccttcattcataggaaatctttcatgcttaacacgtctatcagctgctcttaacaattttgag 216  Q
     |||||||||||| | ||||||||||  |||||||||||||||||||| |||||||||||| ||||||||||||||| || | ||   ||||||||||||    
T  12946858 aatgactgttgcgaaaaacaatttaatcggaggaatcccttcattcattggaaatctttcaagcttaacacgtctattagtttctgaaaacaattttgag 12946957  T
Q  217 ggagatattccacaagaaatatgttgccgcaaacacttgacatttttagctttgggtgagaacaatttttccggtaagattcctt 301  Q
    ||||| |||||||||||||||||||  | |||||||||||||||||||||||||  |||||||||||| ||||||||||||||||    
T  12946958 ggagacattccacaagaaatatgttttctcaaacacttgacatttttagctttgaatgagaacaatttgtccggtaagattcctt 12947042  T

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Target: chr6; HSP #3
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 17 - 301
Target Start/End: Original strand, 12905303 - 12905588
Alignment:
Q  17 acctgacatattgttctaatctcaaattattgtttttgagtgggaaccatctcattggtaaaataccaactgaaatcggctctttgaaaaaacttcaagc 116  Q
    ||||||||||||| || |||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |    
T  12905303 acctgacatattgctccaatctcaagttattgtatttgaatgggaaccatctcattggtaaaataccaactgaaatcggctctttgaaaaagcttcaaac 12905402  T
Q  117 catgactgttgcgcataacaatttaactggaggaatcccttcattcataggaaatctttcatgcttaacacgtctatcagctgctcttaacaattttgag 216  Q
     |||| ||||  |   ||||| ||||| || |||||||||||||||||||||||| ||||| |||||||||||||||||| | ||  |||||||||||||    
T  12905403 aatgagtgtttggagaaacaagttaaccggtggaatcccttcattcataggaaatatttcaagcttaacacgtctatcagtttctggtaacaattttgag 12905502  T
Q  217 ggagatattccacaagaaatatgttgccgcaaacacttgacatttttagctttgggtgag-aacaatttttccggtaagattcctt 301  Q
    ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||    
T  12905503 ggagatattccacaagaaatatgtttcctcaaacacttgacatttttagctttgggtgagaaacaatttgtccggtaagatacctt 12905588  T

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Target: chr6; HSP #4
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 17 - 301
Target Start/End: Original strand, 12897682 - 12897966
Alignment:
Q  17 acctgacatattgttctaatctcaaattattgtttttgagtgggaaccatctcattggtaaaataccaactgaaatcggctctttgaaaaaacttcaagc 116  Q
    ||||||||||||| || |||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |    
T  12897682 acctgacatattgctccaatctcaagttattgtatttgaatgggaaccatctcattggtaaaataccaactgaattcggctctttgaaaaagcttcaatc 12897781  T
Q  117 catgactgttgcgcataacaatttaactggaggaatcccttcattcataggaaatctttcatgcttaacacgtctatcagctgctcttaacaattttgag 216  Q
     |||  ||||  | ||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||| |||| | ||   ||||||||||||    
T  12897782 aatgtttgttcggaataacaatttaaccggaggaatcccttcattcattggaaatctttcaagcttaacacgtctgtcagtttctgaaaacaattttgag 12897881  T
Q  217 ggagatattccacaagaaatatgttgccgcaaacacttgacatttttagctttgggtgagaacaatttttccggtaagattcctt 301  Q
    ||||||||||||||||||||||||| || |||||||||||||| ||||| |||| |||  |||||||| ||||||||||||||||    
T  12897882 ggagatattccacaagaaatatgtttcctcaaacacttgacatatttaggtttgagtgtcaacaatttgtccggtaagattcctt 12897966  T

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Target: chr6; HSP #5
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 17 - 301
Target Start/End: Original strand, 12930393 - 12930677
Alignment:
Q  17 acctgacatattgttctaatctcaaattattgtttttgagtgggaaccatctcattggtaaaataccaactgaaatcggctctttgaaaaaacttcaagc 116  Q
    ||||||||||||| || |||||||||||||||| ||||| |||||||||||||| |||||||||||||| |||||| |||||||||||||| ||||||||    
T  12930393 acctgacatattgctccaatctcaaattattgtatttgaatgggaaccatctcaatggtaaaataccaattgaaattggctctttgaaaaagcttcaagc 12930492  T
Q  117 catgactgttgcgcataacaatttaactggaggaatcccttcattcataggaaatctttcatgcttaacacgtctatcagctgctcttaacaattttgag 216  Q
     ||  |||||| | ||||| ||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||      | |   ||||||||        
T  12930493 aatatctgttgggaataaccatttaaccgaaggaatcccttcatttataggaaatctttcatgcttaacacgtctaaatttgggtgagaacaatttctcc 12930592  T
Q  217 ggagatattccacaagaaatatgttgccgcaaacacttgacatttttagctttgggtgagaacaatttttccggtaagattcctt 301  Q
    ||  | ||||||||||||||||||| || ||||||||||||| |||||| | || ||||||||||||| ||||||||||||||||    
T  12930593 ggtaagattccacaagaaatatgtttcctcaaacacttgacaattttaggtgtgagtgagaacaatttgtccggtaagattcctt 12930677  T

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Target: chr5 (Bit Score: 52; Significance: 8e-21; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 70 - 177
Target Start/End: Complemental strand, 10742741 - 10742634
Alignment:
Q  70 attggtaaaataccaactgaaatcggctctttgaaaaaacttcaagccatgactgttgcgcataacaatttaactggaggaatcccttcattcataggaa 169  Q
    ||||| |||||||||| |||||| |||| |||||||||||||||| |  ||| ||||  | ||||||||||||||||||||||| |||||| |||||| |    
T  10742741 attggcaaaataccaattgaaattggctatttgaaaaaacttcaatcattgagtgtttggaataacaatttaactggaggaatctcttcatccataggga 10742642  T
Q  170 atctttca 177  Q
    ||||||||    
T  10742641 atctttca 10742634  T

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Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 217 - 299
Target Start/End: Complemental strand, 10764989 - 10764907
Alignment:
Q  217 ggagatattccacaagaaatatgttgccgcaaacacttgacatttttagctttgggtgagaacaatttttccggtaagattcc 299  Q
    |||||||||||||||||||||||| ||| |||| |||||||||||||| |||| || ||||||||||| || |||||||||||    
T  10764989 ggagatattccacaagaaatatgtcgcctcaaaaacttgacatttttatcttttggcgagaacaatttgtctggtaagattcc 10764907  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 70 - 185
Target Start/End: Complemental strand, 11049911 - 11049796
Alignment:
Q  70 attggtaaaataccaactgaaatcggctctttgaaaaaacttcaagccatgactgttgcgcataacaatttaactggaggaatcccttcattcataggaa 169  Q
    ||||| || ||||||| |||||| ||||||||||||||||||||| |  || |  ||  | | || || ||||||||||||||||||||||||||||| |    
T  11049911 attggcaagataccaaatgaaattggctctttgaaaaaacttcaatcattggccatttggaaaaataaattaactggaggaatcccttcattcataggga 11049812  T
Q  170 atctttcatgcttaac 185  Q
    |||||||| |||||||    
T  11049811 atctttcaagcttaac 11049796  T

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Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 133 - 179
Target Start/End: Complemental strand, 10718874 - 10718828
Alignment:
Q  133 aacaatttaactggaggaatcccttcattcataggaaatctttcatg 179  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||    
T  10718874 aacaatttaactggaggaatcccttcattcatgggaaatctttcatg 10718828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 70 - 240
Target Start/End: Original strand, 10609880 - 10610050
Alignment:
Q  70 attggtaaaataccaactgaaatcggctctttgaaaaaacttcaagccatgactgttgcgcataacaatttaactggaggaatcccttcattcataggaa 169  Q
    ||||| |||||||| | |||||| |||||||||||||| ||||||    ||||  ||  | | ||||| ||||| |||||||| ||||||||| |||| |    
T  10609880 attggcaaaataccgattgaaattggctctttgaaaaagcttcaatatgtgaccatttggaaaaacaaattaaccggaggaattccttcattcgtaggga 10609979  T
Q  170 atctttcatgcttaacacgtctatcagctgctcttaacaattttgagggagatattccacaagaaatatgt 240  Q
    |||||||||||||||| ||| | |||| | ||   ||||| || || || |||||||||||||||| ||||    
T  10609980 atctttcatgcttaacgcgtttttcagttacttcaaacaacttagaaggggatattccacaagaaacatgt 10610050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 70 - 184
Target Start/End: Complemental strand, 10749054 - 10748940
Alignment:
Q  70 attggtaaaataccaactgaaatcggctctttgaaaaaacttcaagccatgactgttgcgcataacaatttaactggaggaatcccttcattcataggaa 169  Q
    ||||| |||||||||| |||||| |||||||||||||| ||||||   || | ||||  |   |||||||||||||| ||| | |||||||||||||| |    
T  10749054 attggcaaaataccaattgaaattggctctttgaaaaagcttcaactaataaatgtttggggaaacaatttaactggtggatttccttcattcataggga 10748955  T
Q  170 atctttcatgcttaa 184  Q
    ||||||||| |||||    
T  10748954 atctttcatccttaa 10748940  T

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Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 240
Target Start/End: Original strand, 10549097 - 10549133
Alignment:
Q  204 taacaattttgagggagatattccacaagaaatatgt 240  Q
    ||||||||| |||||||||||||||||||||||||||    
T  10549097 taacaatttggagggagatattccacaagaaatatgt 10549133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 257
Target Start/End: Original strand, 10557165 - 10557277
Alignment:
Q  145 ggaggaatcccttcattcataggaaatctttcatgcttaacacgtctatcagctgctcttaacaattttgagggagatattccacaagaaatatgttgcc 244  Q
    |||||| ||||  |||||||||| |||||||||  |||||||  ||| ||   | ||| |||||| || |||||||||||||| |||||||||||| |||    
T  10557165 ggaggagtcccaccattcataggtaatctttcagtcttaacaactctttccatttctcgtaacaacttagagggagatattccccaagaaatatgtcgcc 10557264  T
Q  245 gcaaacacttgac 257  Q
      |||||||||||    
T  10557265 taaaacacttgac 10557277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 132 - 183
Target Start/End: Original strand, 10563259 - 10563310
Alignment:
Q  132 taacaatttaactggaggaatcccttcattcataggaaatctttcatgctta 183  Q
    |||||||||||||||||| |||||||||| |||||| || ||||||| ||||    
T  10563259 taacaatttaactggagggatcccttcatccatagggaacctttcatcctta 10563310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 178
Target Start/End: Complemental strand, 27726035 - 27725990
Alignment:
Q  133 aacaatttaactggaggaatcccttcattcataggaaatctttcat 178  Q
    |||||||| || |||| |||||||||||| ||||||||||||||||    
T  27726035 aacaatttgacaggagaaatcccttcatttataggaaatctttcat 27725990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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