View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8950_low_68 (Length: 313)
Name: NF8950_low_68
Description: NF8950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8950_low_68 |
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Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 20 - 302
Target Start/End: Complemental strand, 3830984 - 3830704
Alignment:
| Q |
20 |
atgaaatcattgtcacccttaaatgttttgttggggctaagatccttttgatgtcaattatgatggattgattgttctatgatgtacaaagaagataagt |
119 |
Q |
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| T |
3830984 |
atgaaatcattgtcacccttaaatgttttgttggggctaagatccttttgatgtcaattatgatggattgattgttctatgatgtacaaagaagataagt |
3830885 |
T |
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| Q |
120 |
cgcatactatccagattgtttatggatttttcttttaatgtccacagatatattgtttatcacaaaatctacgaaaagtgagaagtaaacaaacgaagaa |
219 |
Q |
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||||||||||||| |||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3830884 |
cgcatactatccacattgtttatggacttttcttt--atgtccacaaatatattgtttatcacaaaatctacgaaaagtgagaagtaaacaaacgaagaa |
3830787 |
T |
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| Q |
220 |
gtggatatgagatgtacagataagagaaatatagaaaaaaggagcagttgagaaataagtagtgctctgggatgtaacaccaa |
302 |
Q |
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| T |
3830786 |
gtggatatgagatgtacagataagagaaatatagaaaaaaggagcagttgagaaataagtagtgctctgggatgtaacaccaa |
3830704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 53
Target Start/End: Complemental strand, 3838648 - 3838615
Alignment:
| Q |
20 |
atgaaatcattgtcacccttaaatgttttgttgg |
53 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
3838648 |
atgaaatcattgtcacccttaaatgttttgttgg |
3838615 |
T |
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