View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8950_low_70 (Length: 309)

Name: NF8950_low_70
Description: NF8950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8950_low_70
NF8950_low_70
[»] chr3 (17 HSPs)
chr3 (1-302)||(387990-388291)
chr3 (1-38)||(48508488-48508525)
chr3 (1-37)||(311302-311338)
chr3 (1-37)||(5169085-5169121)
chr3 (129-175)||(384291-384338)
chr3 (1-36)||(12096699-12096734)
chr3 (1-36)||(45374471-45374506)
chr3 (1-36)||(47555326-47555361)
chr3 (1-36)||(53262394-53262429)
chr3 (1-39)||(54128632-54128670)
chr3 (1-34)||(45834596-45834629)
chr3 (1-37)||(829155-829191)
chr3 (1-33)||(2133609-2133641)
chr3 (1-37)||(21000724-21000760)
chr3 (1-33)||(35701102-35701134)
chr3 (1-33)||(48532211-48532243)
chr3 (1-33)||(49503565-49503597)
[»] chr2 (26 HSPs)
chr2 (1-39)||(38328361-38328399)
chr2 (1-37)||(227442-227478)
chr2 (1-37)||(17670721-17670757)
chr2 (1-36)||(3635317-3635352)
chr2 (1-36)||(12734953-12734988)
chr2 (1-36)||(12882039-12882074)
chr2 (1-36)||(15025747-15025782)
chr2 (1-35)||(13188395-13188429)
chr2 (1-35)||(43573125-43573159)
chr2 (1-34)||(30306285-30306318)
chr2 (1-34)||(35643201-35643234)
chr2 (1-34)||(44437717-44437750)
chr2 (1-37)||(451641-451677)
chr2 (1-33)||(1648117-1648149)
chr2 (1-33)||(4807848-4807880)
chr2 (1-33)||(7326157-7326189)
chr2 (1-33)||(9531597-9531629)
chr2 (1-33)||(12489799-12489831)
chr2 (1-33)||(14444922-14444954)
chr2 (5-37)||(17626329-17626361)
chr2 (1-37)||(25384722-25384758)
chr2 (1-33)||(25834931-25834963)
chr2 (1-33)||(37520699-37520731)
chr2 (1-33)||(38429662-38429694)
chr2 (1-37)||(39029840-39029876)
chr2 (1-33)||(42543488-42543520)
[»] chr7 (27 HSPs)
chr7 (1-38)||(32631817-32631854)
chr7 (1-38)||(47413707-47413744)
chr7 (1-37)||(35725564-35725600)
chr7 (1-36)||(12841269-12841304)
chr7 (1-36)||(12966269-12966304)
chr7 (1-36)||(28208322-28208357)
chr7 (1-36)||(29650637-29650672)
chr7 (1-36)||(31005458-31005493)
chr7 (1-36)||(31682596-31682631)
chr7 (1-36)||(38900209-38900244)
chr7 (1-36)||(43491561-43491596)
chr7 (1-36)||(44855168-44855203)
chr7 (1-35)||(14594005-14594039)
chr7 (1-35)||(16013528-16013562)
chr7 (1-35)||(20899424-20899458)
chr7 (1-34)||(30199963-30199996)
chr7 (1-38)||(37618198-37618235)
chr7 (1-34)||(39906368-39906401)
chr7 (1-34)||(43423987-43424020)
chr7 (1-33)||(2885719-2885751)
chr7 (1-33)||(11594213-11594245)
chr7 (1-37)||(27893556-27893592)
chr7 (1-33)||(29312242-29312274)
chr7 (1-33)||(29318792-29318824)
chr7 (1-37)||(31869095-31869131)
chr7 (1-33)||(33281139-33281171)
chr7 (1-33)||(36101774-36101806)
[»] chr5 (14 HSPs)
chr5 (1-38)||(7090324-7090361)
chr5 (1-37)||(4496637-4496673)
chr5 (1-37)||(28976852-28976888)
chr5 (1-37)||(29929307-29929343)
chr5 (1-36)||(12492378-12492413)
chr5 (1-36)||(14665965-14666000)
chr5 (1-31)||(5558394-5558424)
chr5 (4-38)||(32006155-32006189)
chr5 (1-30)||(9121078-9121107)
chr5 (1-37)||(2915489-2915525)
chr5 (1-33)||(13606994-13607026)
chr5 (1-33)||(28411929-28411961)
chr5 (1-33)||(29816635-29816667)
chr5 (1-33)||(42576263-42576295)
[»] chr1 (19 HSPs)
chr1 (1-38)||(43481790-43481827)
chr1 (1-38)||(51602309-51602346)
chr1 (1-37)||(2914116-2914152)
chr1 (1-37)||(34444609-34444645)
chr1 (1-36)||(8809495-8809530)
chr1 (1-36)||(25979225-25979260)
chr1 (1-36)||(30202124-30202159)
chr1 (3-37)||(11572405-11572439)
chr1 (1-35)||(38758015-38758049)
chr1 (1-34)||(15086175-15086208)
chr1 (1-33)||(1210998-1211030)
chr1 (1-37)||(4318838-4318874)
chr1 (1-33)||(4707218-4707250)
chr1 (1-37)||(22930646-22930682)
chr1 (1-37)||(30985301-30985337)
chr1 (1-37)||(37430413-37430449)
chr1 (1-33)||(38807668-38807700)
chr1 (1-33)||(41560482-41560514)
chr1 (1-33)||(44751737-44751769)
[»] scaffold0168 (1 HSPs)
scaffold0168 (1-37)||(28882-28918)
[»] chr8 (17 HSPs)
chr8 (1-37)||(1064973-1065009)
chr8 (1-37)||(14742075-14742111)
chr8 (1-37)||(24837944-24837980)
chr8 (1-36)||(32978127-32978162)
chr8 (1-36)||(44047526-44047561)
chr8 (1-39)||(35643599-35643637)
chr8 (1-35)||(41031415-41031449)
chr8 (1-35)||(41031521-41031555)
chr8 (1-38)||(16921472-16921509)
chr8 (1-34)||(31716075-31716108)
chr8 (1-37)||(490588-490624)
chr8 (1-33)||(2027783-2027815)
chr8 (1-33)||(11523720-11523752)
chr8 (1-33)||(30198263-30198295)
chr8 (1-37)||(32276938-32276974)
chr8 (1-33)||(36545402-36545434)
chr8 (2-38)||(40982888-40982924)
[»] chr6 (6 HSPs)
chr6 (1-37)||(28085629-28085665)
chr6 (1-37)||(3127269-3127305)
chr6 (1-37)||(4245865-4245901)
chr6 (1-37)||(5258141-5258177)
chr6 (1-37)||(6293385-6293421)
chr6 (1-33)||(12890828-12890860)
[»] chr4 (36 HSPs)
chr4 (1-37)||(6957851-6957887)
chr4 (1-37)||(19154856-19154892)
chr4 (1-37)||(31961259-31961295)
chr4 (1-37)||(50238608-50238644)
chr4 (1-37)||(50238694-50238730)
chr4 (2-37)||(2589326-2589361)
chr4 (1-36)||(8286692-8286727)
chr4 (1-36)||(21528541-21528576)
chr4 (1-36)||(30634100-30634135)
chr4 (1-36)||(32339812-32339847)
chr4 (1-36)||(37488344-37488379)
chr4 (1-36)||(49454473-49454508)
chr4 (1-36)||(55007999-55008034)
chr4 (3-37)||(1328607-1328641)
chr4 (2-36)||(7066493-7066527)
chr4 (2-36)||(35585859-35585893)
chr4 (1-35)||(43434177-43434211)
chr4 (1-35)||(45209200-45209234)
chr4 (1-35)||(46153961-46153995)
chr4 (1-35)||(48174088-48174122)
chr4 (3-37)||(49416209-49416243)
chr4 (1-34)||(8327154-8327187)
chr4 (3-36)||(19061929-19061962)
chr4 (2-35)||(25575078-25575111)
chr4 (1-33)||(436482-436514)
chr4 (1-33)||(10536592-10536624)
chr4 (1-33)||(12494916-12494948)
chr4 (1-33)||(26772534-26772566)
chr4 (1-37)||(35622669-35622705)
chr4 (1-33)||(39100533-39100565)
chr4 (1-33)||(45204837-45204869)
chr4 (1-33)||(50869877-50869909)
chr4 (5-37)||(51438702-51438734)
chr4 (1-33)||(52569512-52569544)
chr4 (1-37)||(53413944-53413980)
chr4 (1-33)||(56130423-56130455)
[»] scaffold0018 (1 HSPs)
scaffold0018 (1-34)||(31721-31754)
[»] scaffold0570 (1 HSPs)
scaffold0570 (2-34)||(944-976)
[»] scaffold0157 (1 HSPs)
scaffold0157 (1-33)||(25529-25561)


Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-163; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 388291 - 387990
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttgtaacacttttgtggtgtggattctgacataggcattgtctcttttatacagatgctactaagtat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  388291 cttagtgggataaggcttggttgtcgttgttgttgtaacacttttgtggtgtggattctgacatagacattgtctcttttatacagatgctactaagtat 388192  T
Q  101 tatatacatcttcagccctattgacatcattccagaaggtaccgtagcgtagaatgttatattgatttcaatttcagttcaagtaatcagttatattttg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  388191 tatatacatcttcagccctattgacatcattccagaaggtaccgtagcgtagaatgttatattgatttcaatttcagttcaattaatcagttatgttttg 388092  T
Q  201 tcgttttgttgagtttgtgtaagtatctattactcatgcttgagttttgttctcttttctgtgcagggatgttgggaataattggtcttttggatgatgt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  388091 tcgttttgttgagtttgtgtaagtatctattactcatgcttgagttttgttctcttttctgtgcagggatgttgggaataattggtcttttggatgatgt 387992  T
Q  301 cc 302  Q
    ||    
T  387991 cc 387990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 48508488 - 48508525
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttgtaa 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  48508488 cttagtgggataaggcttggttgttgttgttgttgtaa 48508525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 311338 - 311302
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttgta 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  311338 cttagtgggataaggcttggttgttgttgttgttgta 311302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 5169085 - 5169121
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttgta 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  5169085 cttagtgggataaggcttggttgttgttgttgttgta 5169121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 129 - 175
Target Start/End: Complemental strand, 384338 - 384291
Alignment:
Q  129 attccagaaggtaccgtagcgtagaatgt-tatattgatttcaatttc 175  Q
    ||||||||||||||||||| ||||||| | ||||||||||||||||||    
T  384338 attccagaaggtaccgtagtgtagaatatgtatattgatttcaatttc 384291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 12096734 - 12096699
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttgt 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  12096734 cttagtgggataaggcttggttgttgttgttgttgt 12096699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 45374506 - 45374471
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttgt 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  45374506 cttagtgggataaggcttggttgttgttgttgttgt 45374471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 47555361 - 47555326
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttgt 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  47555361 cttagtgggataaggcttggttgttgttgttgttgt 47555326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 53262394 - 53262429
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttgt 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  53262394 cttagtgggataaggcttggttgttgttgttgttgt 53262429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 54128632 - 54128670
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttgtaac 39  Q
    |||||||||||||||||||||||| |||||| |||||||    
T  54128632 cttagtgggataaggcttggttgttgttgttattgtaac 54128670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 45834629 - 45834596
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgtt 34  Q
    |||||||||||||||||||||||| |||||||||    
T  45834629 cttagtgggataaggcttggttgttgttgttgtt 45834596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 829155 - 829191
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttgta 37  Q
    |||||| ||||||||||||||||| ||||||||||||    
T  829155 cttagttggataaggcttggttgttgttgttgttgta 829191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 2133641 - 2133609
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgt 33  Q
    |||||||||||||||||||||||| ||||||||    
T  2133641 cttagtgggataaggcttggttgttgttgttgt 2133609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 21000724 - 21000760
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttgta 37  Q
    ||||||||||||||| |||||||| ||||||||||||    
T  21000724 cttagtgggataaggtttggttgttgttgttgttgta 21000760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 35701102 - 35701134
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgt 33  Q
    |||||||||||||||||||||||| ||||||||    
T  35701102 cttagtgggataaggcttggttgttgttgttgt 35701134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 48532211 - 48532243
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgt 33  Q
    |||||||||||||||||||||||| ||||||||    
T  48532211 cttagtgggataaggcttggttgttgttgttgt 48532243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 49503597 - 49503565
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgt 33  Q
    |||||||||||||||||||||||| ||||||||    
T  49503597 cttagtgggataaggcttggttgttgttgttgt 49503565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 38328399 - 38328361
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttgtaac 39  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  38328399 cttagtgggataaggcttggttgttgttgttgttgtaac 38328361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 227442 - 227478
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttgta 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  227442 cttagtgggataaggcttggttgttgttgttgttgta 227478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 17670721 - 17670757
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttgta 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  17670721 cttagtgggataaggcttggttgttgttgttgttgta 17670757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 3635352 - 3635317
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttgt 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  3635352 cttagtgggataaggcttggttgttgttgttgttgt 3635317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 12734953 - 12734988
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttgt 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  12734953 cttagtgggataaggcttggttgttgttgttgttgt 12734988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 12882074 - 12882039
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttgt 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  12882074 cttagtgggataaggcttggttgttgttgttgttgt 12882039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 15025747 - 15025782
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttgt 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  15025747 cttagtgggataaggcttggttgttgttgttgttgt 15025782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 13188395 - 13188429
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttg 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  13188395 cttagtgggataaggcttggttgttgttgttgttg 13188429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 43573159 - 43573125
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttg 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  43573159 cttagtgggataaggcttggttgttgttgttgttg 43573125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 30306285 - 30306318
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgtt 34  Q
    |||||||||||||||||||||||| |||||||||    
T  30306285 cttagtgggataaggcttggttgttgttgttgtt 30306318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 35643201 - 35643234
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgtt 34  Q
    |||||||||||||||||||||||| |||||||||    
T  35643201 cttagtgggataaggcttggttgttgttgttgtt 35643234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 44437750 - 44437717
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgtt 34  Q
    |||||||||||||||||||||||| |||||||||    
T  44437750 cttagtgggataaggcttggttgttgttgttgtt 44437717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 451677 - 451641
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttgta 37  Q
    |||||||||| ||||||||||||| ||||||||||||    
T  451677 cttagtgggacaaggcttggttgttgttgttgttgta 451641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 1648117 - 1648149
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgt 33  Q
    |||||||||||||||||||||||| ||||||||    
T  1648117 cttagtgggataaggcttggttgttgttgttgt 1648149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 4807848 - 4807880
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgt 33  Q
    |||||||||||||||||||||||| ||||||||    
T  4807848 cttagtgggataaggcttggttgttgttgttgt 4807880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 7326189 - 7326157
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgt 33  Q
    |||||||||||||||||||||||| ||||||||    
T  7326189 cttagtgggataaggcttggttgttgttgttgt 7326157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 9531629 - 9531597
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgt 33  Q
    |||||||||||||||||||||||| ||||||||    
T  9531629 cttagtgggataaggcttggttgttgttgttgt 9531597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 12489831 - 12489799
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgt 33  Q
    |||||||||||||||||||||||| ||||||||    
T  12489831 cttagtgggataaggcttggttgttgttgttgt 12489799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 14444922 - 14444954
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgt 33  Q
    |||||||||||||||||||||||| ||||||||    
T  14444922 cttagtgggataaggcttggttgttgttgttgt 14444954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 37
Target Start/End: Original strand, 17626329 - 17626361
Alignment:
Q  5 gtgggataaggcttggttgtcgttgttgttgta 37  Q
    |||||||||||||||||||| ||||||||||||    
T  17626329 gtgggataaggcttggttgttgttgttgttgta 17626361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 25384722 - 25384758
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttgta 37  Q
    ||||||||||||||||||||| || ||||||||||||    
T  25384722 cttagtgggataaggcttggtggttgttgttgttgta 25384758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 25834931 - 25834963
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgt 33  Q
    |||||||||||||||||||||||| ||||||||    
T  25834931 cttagtgggataaggcttggttgttgttgttgt 25834963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 37520699 - 37520731
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgt 33  Q
    |||||||||||||||||||||||| ||||||||    
T  37520699 cttagtgggataaggcttggttgttgttgttgt 37520731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 38429662 - 38429694
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgt 33  Q
    |||||||||||||||||||||||| ||||||||    
T  38429662 cttagtgggataaggcttggttgttgttgttgt 38429694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 39029840 - 39029876
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttgta 37  Q
    |||||||||||||||||||||||| ||| ||||||||    
T  39029840 cttagtgggataaggcttggttgttgttcttgttgta 39029876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 42543488 - 42543520
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgt 33  Q
    |||||||||||||||||||||||| ||||||||    
T  42543488 cttagtgggataaggcttggttgttgttgttgt 42543520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 32631817 - 32631854
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttgtaa 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  32631817 cttagtgggataaggcttggttgttgttgttgttgtaa 32631854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 47413744 - 47413707
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttgtaa 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  47413744 cttagtgggataaggcttggttgttgttgttgttgtaa 47413707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 35725600 - 35725564
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttgta 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  35725600 cttagtgggataaggcttggttgttgttgttgttgta 35725564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 12841304 - 12841269
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttgt 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  12841304 cttagtgggataaggcttggttgttgttgttgttgt 12841269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 12966269 - 12966304
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttgt 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  12966269 cttagtgggataaggcttggttgttgttgttgttgt 12966304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 28208357 - 28208322
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttgt 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  28208357 cttagtgggataaggcttggttgttgttgttgttgt 28208322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 29650637 - 29650672
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttgt 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  29650637 cttagtgggataaggcttggttgttgttgttgttgt 29650672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 31005458 - 31005493
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttgt 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  31005458 cttagtgggataaggcttggttgttgttgttgttgt 31005493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 31682631 - 31682596
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttgt 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  31682631 cttagtgggataaggcttggttgttgttgttgttgt 31682596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 38900209 - 38900244
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttgt 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  38900209 cttagtgggataaggcttggttgttgttgttgttgt 38900244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 43491561 - 43491596
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttgt 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  43491561 cttagtgggataaggcttggttgttgttgttgttgt 43491596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 44855203 - 44855168
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttgt 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  44855203 cttagtgggataaggcttggttgttgttgttgttgt 44855168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 14594005 - 14594039
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttg 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  14594005 cttagtgggataaggcttggttgttgttgttgttg 14594039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 16013528 - 16013562
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttg 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  16013528 cttagtgggataaggcttggttgttgttgttgttg 16013562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 20899424 - 20899458
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttg 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  20899424 cttagtgggataaggcttggttgttgttgttgttg 20899458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 30199996 - 30199963
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgtt 34  Q
    |||||||||||||||||||||||| |||||||||    
T  30199996 cttagtgggataaggcttggttgttgttgttgtt 30199963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 37618198 - 37618235
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttgtaa 38  Q
    |||||||||||||||||||||||| ||||||| |||||    
T  37618198 cttagtgggataaggcttggttgttgttgttgctgtaa 37618235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 39906401 - 39906368
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgtt 34  Q
    |||||||||||||||||||||||| |||||||||    
T  39906401 cttagtgggataaggcttggttgttgttgttgtt 39906368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 43424020 - 43423987
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgtt 34  Q
    |||||||||||||||||||||||| |||||||||    
T  43424020 cttagtgggataaggcttggttgttgttgttgtt 43423987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 2885751 - 2885719
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgt 33  Q
    |||||||||||||||||||||||| ||||||||    
T  2885751 cttagtgggataaggcttggttgttgttgttgt 2885719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 11594213 - 11594245
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgt 33  Q
    |||||||||||||||||||||||| ||||||||    
T  11594213 cttagtgggataaggcttggttgttgttgttgt 11594245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 27893592 - 27893556
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttgta 37  Q
    ||||||| |||||||||||||||| ||||||||||||    
T  27893592 cttagtgcgataaggcttggttgttgttgttgttgta 27893556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 29312242 - 29312274
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgt 33  Q
    |||||||||||||||||||||||| ||||||||    
T  29312242 cttagtgggataaggcttggttgttgttgttgt 29312274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 29318824 - 29318792
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgt 33  Q
    |||||||||||||||||||||||| ||||||||    
T  29318824 cttagtgggataaggcttggttgttgttgttgt 29318792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 31869131 - 31869095
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttgta 37  Q
    |||||||||||||||||||||||| |||||| |||||    
T  31869131 cttagtgggataaggcttggttgttgttgttcttgta 31869095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 33281139 - 33281171
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgt 33  Q
    |||||||||||||||||||||||| ||||||||    
T  33281139 cttagtgggataaggcttggttgttgttgttgt 33281171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 36101806 - 36101774
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgt 33  Q
    |||||||||||||||||||||||| ||||||||    
T  36101806 cttagtgggataaggcttggttgttgttgttgt 36101774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 7090324 - 7090361
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttgtaa 38  Q
    |||||||||||| |||||||||||||||||||||||||    
T  7090324 cttagtgggatagggcttggttgtcgttgttgttgtaa 7090361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 4496637 - 4496673
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttgta 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  4496637 cttagtgggataaggcttggttgttgttgttgttgta 4496673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 28976888 - 28976852
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttgta 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  28976888 cttagtgggataaggcttggttgttgttgttgttgta 28976852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 29929307 - 29929343
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttgta 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  29929307 cttagtgggataaggcttggttgttgttgttgttgta 29929343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 12492413 - 12492378
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttgt 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  12492413 cttagtgggataaggcttggttgttgttgttgttgt 12492378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 14665965 - 14666000
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttgt 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  14665965 cttagtgggataaggcttggttgttgttgttgttgt 14666000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 5558394 - 5558424
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgtt 31  Q
    |||||||||||||||||||||||||||||||    
T  5558394 cttagtgggataaggcttggttgtcgttgtt 5558424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 38
Target Start/End: Complemental strand, 32006189 - 32006155
Alignment:
Q  4 agtgggataaggcttggttgtcgttgttgttgtaa 38  Q
    ||||||||||||||||||||| |||||||||||||    
T  32006189 agtgggataaggcttggttgttgttgttgttgtaa 32006155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 9121107 - 9121078
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgt 30  Q
    ||||||||||||||||||||||||||||||    
T  9121107 cttagtgggataaggcttggttgtcgttgt 9121078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 2915525 - 2915489
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttgta 37  Q
    |||||||||||||||||||||| | ||||||||||||    
T  2915525 cttagtgggataaggcttggttattgttgttgttgta 2915489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 13607026 - 13606994
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgt 33  Q
    |||||||||||||||||||||||| ||||||||    
T  13607026 cttagtgggataaggcttggttgttgttgttgt 13606994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 28411929 - 28411961
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgt 33  Q
    |||||||||||||||||||||||| ||||||||    
T  28411929 cttagtgggataaggcttggttgttgttgttgt 28411961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 29816635 - 29816667
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgt 33  Q
    |||||||||||||||||||||||| ||||||||    
T  29816635 cttagtgggataaggcttggttgttgttgttgt 29816667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 42576263 - 42576295
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgt 33  Q
    |||||||||||||||||||||||| ||||||||    
T  42576263 cttagtgggataaggcttggttgttgttgttgt 42576295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 43481827 - 43481790
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttgtaa 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  43481827 cttagtgggataaggcttggttgttgttgttgttgtaa 43481790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 51602309 - 51602346
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttgtaa 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  51602309 cttagtgggataaggcttggttgttgttgttgttgtaa 51602346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 2914152 - 2914116
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttgta 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  2914152 cttagtgggataaggcttggttgttgttgttgttgta 2914116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 34444609 - 34444645
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttgta 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  34444609 cttagtgggataaggcttggttgttgttgttgttgta 34444645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 8809530 - 8809495
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttgt 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  8809530 cttagtgggataaggcttggttgttgttgttgttgt 8809495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 25979260 - 25979225
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttgt 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  25979260 cttagtgggataaggcttggttgttgttgttgttgt 25979225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 30202159 - 30202124
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttgt 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  30202159 cttagtgggataaggcttggttgttgttgttgttgt 30202124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 37
Target Start/End: Original strand, 11572405 - 11572439
Alignment:
Q  3 tagtgggataaggcttggttgtcgttgttgttgta 37  Q
    |||||||||||||||||||||| ||||||||||||    
T  11572405 tagtgggataaggcttggttgttgttgttgttgta 11572439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 38758049 - 38758015
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttg 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  38758049 cttagtgggataaggcttggttgttgttgttgttg 38758015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 15086175 - 15086208
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgtt 34  Q
    |||||||||||||||||||||||| |||||||||    
T  15086175 cttagtgggataaggcttggttgttgttgttgtt 15086208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 1210998 - 1211030
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgt 33  Q
    |||||||||||||||||||||||| ||||||||    
T  1210998 cttagtgggataaggcttggttgttgttgttgt 1211030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 4318874 - 4318838
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttgta 37  Q
    |||||||||| ||||||||||||| ||||||||||||    
T  4318874 cttagtgggaaaaggcttggttgttgttgttgttgta 4318838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 4707250 - 4707218
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgt 33  Q
    |||||||||||||||||||||||| ||||||||    
T  4707250 cttagtgggataaggcttggttgttgttgttgt 4707218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 22930646 - 22930682
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttgta 37  Q
    ||||||||||||| |||||||||| ||||||||||||    
T  22930646 cttagtgggataatgcttggttgttgttgttgttgta 22930682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 30985337 - 30985301
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttgta 37  Q
    ||||||||||||||||||| |||| ||||||||||||    
T  30985337 cttagtgggataaggcttgtttgttgttgttgttgta 30985301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 37430449 - 37430413
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttgta 37  Q
    ||||||| |||||||||||||||| ||||||||||||    
T  37430449 cttagtgagataaggcttggttgttgttgttgttgta 37430413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 38807700 - 38807668
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgt 33  Q
    |||||||||||||||||||||||| ||||||||    
T  38807700 cttagtgggataaggcttggttgttgttgttgt 38807668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 41560482 - 41560514
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgt 33  Q
    |||||||||||||||||||||||| ||||||||    
T  41560482 cttagtgggataaggcttggttgttgttgttgt 41560514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 44751737 - 44751769
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgt 33  Q
    |||||||||||||||||||||||| ||||||||    
T  44751737 cttagtgggataaggcttggttgttgttgttgt 44751769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 28918 - 28882
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttgta 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  28918 cttagtgggataaggcttggttgttgttgttgttgta 28882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 1064973 - 1065009
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttgta 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  1064973 cttagtgggataaggcttggttgttgttgttgttgta 1065009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 14742111 - 14742075
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttgta 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  14742111 cttagtgggataaggcttggttgttgttgttgttgta 14742075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 24837944 - 24837980
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttgta 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  24837944 cttagtgggataaggcttggttgttgttgttgttgta 24837980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 32978127 - 32978162
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttgt 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  32978127 cttagtgggataaggcttggttgttgttgttgttgt 32978162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 44047561 - 44047526
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttgt 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  44047561 cttagtgggataaggcttggttgttgttgttgttgt 44047526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 35643637 - 35643599
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttgtaac 39  Q
    ||||||||||||| |||||||||| ||||||||||||||    
T  35643637 cttagtgggataatgcttggttgttgttgttgttgtaac 35643599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 41031449 - 41031415
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttg 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  41031449 cttagtgggataaggcttggttgttgttgttgttg 41031415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 41031555 - 41031521
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttg 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  41031555 cttagtgggataaggcttggttgttgttgttgttg 41031521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 16921472 - 16921509
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttgtaa 38  Q
    ||||||||||||| |||||||||| |||||||||||||    
T  16921472 cttagtgggataaagcttggttgttgttgttgttgtaa 16921509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 31716075 - 31716108
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgtt 34  Q
    |||||||||||||||||||||||| |||||||||    
T  31716075 cttagtgggataaggcttggttgttgttgttgtt 31716108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 490588 - 490624
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttgta 37  Q
    ||||||||||||||||||| |||| ||||||||||||    
T  490588 cttagtgggataaggcttgtttgttgttgttgttgta 490624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 2027783 - 2027815
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgt 33  Q
    |||||||||||||||||||||||| ||||||||    
T  2027783 cttagtgggataaggcttggttgttgttgttgt 2027815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 11523752 - 11523720
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgt 33  Q
    |||||||||||||||||||||||| ||||||||    
T  11523752 cttagtgggataaggcttggttgttgttgttgt 11523720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 30198295 - 30198263
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgt 33  Q
    |||||||||||||||||||||||| ||||||||    
T  30198295 cttagtgggataaggcttggttgttgttgttgt 30198263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 32276938 - 32276974
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttgta 37  Q
    ||||||||||||| |||||||||| ||||||||||||    
T  32276938 cttagtgggataaagcttggttgttgttgttgttgta 32276974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 36545402 - 36545434
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgt 33  Q
    |||||||||||||||||||||||| ||||||||    
T  36545402 cttagtgggataaggcttggttgttgttgttgt 36545434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 40982924 - 40982888
Alignment:
Q  2 ttagtgggataaggcttggttgtcgttgttgttgtaa 38  Q
    ||||||||| ||||||||||||| |||||||||||||    
T  40982924 ttagtgggaaaaggcttggttgttgttgttgttgtaa 40982888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 28085629 - 28085665
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttgta 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  28085629 cttagtgggataaggcttggttgttgttgttgttgta 28085665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 3127305 - 3127269
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttgta 37  Q
    ||||||| |||||||||||||||| ||||||||||||    
T  3127305 cttagtgtgataaggcttggttgttgttgttgttgta 3127269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 4245901 - 4245865
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttgta 37  Q
    ||||||||||||||||||||||||  |||||||||||    
T  4245901 cttagtgggataaggcttggttgtttttgttgttgta 4245865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 5258177 - 5258141
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttgta 37  Q
    |||||||||||||| ||||||||| ||||||||||||    
T  5258177 cttagtgggataagtcttggttgttgttgttgttgta 5258141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 6293421 - 6293385
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttgta 37  Q
    |||||||||||||||||||||||  ||||||||||||    
T  6293421 cttagtgggataaggcttggttgcggttgttgttgta 6293385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 12890828 - 12890860
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgt 33  Q
    |||||||||||||||||||||||| ||||||||    
T  12890828 cttagtgggataaggcttggttgttgttgttgt 12890860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 6957851 - 6957887
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttgta 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  6957851 cttagtgggataaggcttggttgttgttgttgttgta 6957887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 19154892 - 19154856
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttgta 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  19154892 cttagtgggataaggcttggttgttgttgttgttgta 19154856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 31961295 - 31961259
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttgta 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  31961295 cttagtgggataaggcttggttgttgttgttgttgta 31961259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 50238644 - 50238608
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttgta 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  50238644 cttagtgggataaggcttggttgttgttgttgttgta 50238608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 50238730 - 50238694
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttgta 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  50238730 cttagtgggataaggcttggttgttgttgttgttgta 50238694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 2 - 37
Target Start/End: Original strand, 2589326 - 2589361
Alignment:
Q  2 ttagtgggataaggcttggttgtcgttgttgttgta 37  Q
    ||||||||||||||||||||||| ||||||||||||    
T  2589326 ttagtgggataaggcttggttgttgttgttgttgta 2589361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 8286692 - 8286727
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttgt 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  8286692 cttagtgggataaggcttggttgttgttgttgttgt 8286727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 21528541 - 21528576
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttgt 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  21528541 cttagtgggataaggcttggttgttgttgttgttgt 21528576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 30634135 - 30634100
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttgt 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  30634135 cttagtgggataaggcttggttgttgttgttgttgt 30634100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 32339812 - 32339847
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttgt 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  32339812 cttagtgggataaggcttggttgttgttgttgttgt 32339847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 37488344 - 37488379
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttgt 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  37488344 cttagtgggataaggcttggttgttgttgttgttgt 37488379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 49454508 - 49454473
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttgt 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  49454508 cttagtgggataaggcttggttgttgttgttgttgt 49454473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 55007999 - 55008034
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttgt 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  55007999 cttagtgggataaggcttggttgttgttgttgttgt 55008034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 37
Target Start/End: Complemental strand, 1328641 - 1328607
Alignment:
Q  3 tagtgggataaggcttggttgtcgttgttgttgta 37  Q
    |||||||||||||||||||||| ||||||||||||    
T  1328641 tagtgggataaggcttggttgttgttgttgttgta 1328607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 36
Target Start/End: Complemental strand, 7066527 - 7066493
Alignment:
Q  2 ttagtgggataaggcttggttgtcgttgttgttgt 36  Q
    ||||||||||||||||||||||| |||||||||||    
T  7066527 ttagtgggataaggcttggttgttgttgttgttgt 7066493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 36
Target Start/End: Original strand, 35585859 - 35585893
Alignment:
Q  2 ttagtgggataaggcttggttgtcgttgttgttgt 36  Q
    ||||||||||||||||||||||| |||||||||||    
T  35585859 ttagtgggataaggcttggttgttgttgttgttgt 35585893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 43434177 - 43434211
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttg 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  43434177 cttagtgggataaggcttggttgttgttgttgttg 43434211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 45209234 - 45209200
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttg 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  45209234 cttagtgggataaggcttggttgttgttgttgttg 45209200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 46153961 - 46153995
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttg 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  46153961 cttagtgggataaggcttggttgttgttgttgttg 46153995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 48174122 - 48174088
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttg 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  48174122 cttagtgggataaggcttggttgttgttgttgttg 48174088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 37
Target Start/End: Original strand, 49416209 - 49416243
Alignment:
Q  3 tagtgggataaggcttggttgtcgttgttgttgta 37  Q
    |||||||||||||||||||||| ||||||||||||    
T  49416209 tagtgggataaggcttggttgttgttgttgttgta 49416243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 8327154 - 8327187
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgtt 34  Q
    |||||||||||||||||||||||| |||||||||    
T  8327154 cttagtgggataaggcttggttgttgttgttgtt 8327187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 19061962 - 19061929
Alignment:
Q  3 tagtgggataaggcttggttgtcgttgttgttgt 36  Q
    |||||||||||||||||||||| |||||||||||    
T  19061962 tagtgggataaggcttggttgttgttgttgttgt 19061929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 35
Target Start/End: Original strand, 25575078 - 25575111
Alignment:
Q  2 ttagtgggataaggcttggttgtcgttgttgttg 35  Q
    ||||||||||||||||||||||| ||||||||||    
T  25575078 ttagtgggataaggcttggttgttgttgttgttg 25575111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 436482 - 436514
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgt 33  Q
    |||||||||||||||||||||||| ||||||||    
T  436482 cttagtgggataaggcttggttgttgttgttgt 436514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 10536592 - 10536624
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgt 33  Q
    ||||||||||||||||||||||||| |||||||    
T  10536592 cttagtgggataaggcttggttgtcattgttgt 10536624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 12494916 - 12494948
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgt 33  Q
    |||||||||||||||||||||||| ||||||||    
T  12494916 cttagtgggataaggcttggttgttgttgttgt 12494948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 26772566 - 26772534
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgt 33  Q
    |||||||||||||||||||||||| ||||||||    
T  26772566 cttagtgggataaggcttggttgttgttgttgt 26772534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 35622705 - 35622669
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttgta 37  Q
    ||||||||||||||||||||| || ||||||||||||    
T  35622705 cttagtgggataaggcttggtcgttgttgttgttgta 35622669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 39100565 - 39100533
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgt 33  Q
    |||||||||||||||||||||||| ||||||||    
T  39100565 cttagtgggataaggcttggttgttgttgttgt 39100533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 45204869 - 45204837
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgt 33  Q
    |||||||||||||||||||||||| ||||||||    
T  45204869 cttagtgggataaggcttggttgttgttgttgt 45204837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 50869909 - 50869877
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgt 33  Q
    |||||||||||||||||||||||| ||||||||    
T  50869909 cttagtgggataaggcttggttgttgttgttgt 50869877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 37
Target Start/End: Original strand, 51438702 - 51438734
Alignment:
Q  5 gtgggataaggcttggttgtcgttgttgttgta 37  Q
    |||||||||||||||||||| ||||||||||||    
T  51438702 gtgggataaggcttggttgttgttgttgttgta 51438734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 52569544 - 52569512
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgt 33  Q
    |||||||||||||||||||||||| ||||||||    
T  52569544 cttagtgggataaggcttggttgttgttgttgt 52569512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 53413944 - 53413980
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgttgta 37  Q
    ||||||||||||||| |||||||| ||||||||||||    
T  53413944 cttagtgggataaggtttggttgttgttgttgttgta 53413980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 56130423 - 56130455
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgt 33  Q
    |||||||||||||||||||||||| ||||||||    
T  56130423 cttagtgggataaggcttggttgttgttgttgt 56130455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 31721 - 31754
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgtt 34  Q
    |||||||||||||||||||||||| |||||||||    
T  31721 cttagtgggataaggcttggttgttgttgttgtt 31754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0570 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 976 - 944
Alignment:
Q  2 ttagtgggataaggcttggttgtcgttgttgtt 34  Q
    ||||||||||||||||||||||| |||||||||    
T  976 ttagtgggataaggcttggttgttgttgttgtt 944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 25561 - 25529
Alignment:
Q  1 cttagtgggataaggcttggttgtcgttgttgt 33  Q
    |||||||||||||||||||||||| ||||||||    
T  25561 cttagtgggataaggcttggttgttgttgttgt 25529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University