View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8950_low_73 (Length: 295)

Name: NF8950_low_73
Description: NF8950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8950_low_73
NF8950_low_73
[»] chr4 (4 HSPs)
chr4 (179-279)||(2004845-2004945)
chr4 (1-128)||(2004635-2004781)
chr4 (79-124)||(2032828-2032873)
chr4 (135-163)||(2016226-2016254)
[»] chr6 (4 HSPs)
chr6 (178-267)||(25422181-25422270)
chr6 (179-279)||(5374978-5375078)
chr6 (178-271)||(34823933-34824026)
chr6 (178-271)||(33459775-33459868)
[»] chr3 (2 HSPs)
chr3 (189-269)||(19472718-19472798)
chr3 (178-271)||(37192212-37192305)
[»] chr8 (3 HSPs)
chr8 (189-267)||(20076689-20076767)
chr8 (178-271)||(2996638-2996731)
chr8 (203-271)||(25575850-25575918)
[»] chr2 (2 HSPs)
chr2 (203-271)||(18499821-18499889)
chr2 (203-271)||(26361492-26361560)
[»] chr1 (2 HSPs)
chr1 (216-267)||(19571331-19571382)
chr1 (1-57)||(29839377-29839433)
[»] scaffold0779 (1 HSPs)
scaffold0779 (203-271)||(3999-4067)


Alignment Details
Target: chr4 (Bit Score: 89; Significance: 6e-43; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 179 - 279
Target Start/End: Original strand, 2004845 - 2004945
Alignment:
Q  179 tagagttgagagaaaacatcaatccattttaaatatcactagagctttactttttcaatcacatttacctaaaagtttttggtcttatgctgcagttcat 278  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  2004845 tagagttgagagaaaacatcaatctattttaaatatcactagagctttactttttcaatcacatttacctaaaagtttttggtcttatgatgcagatcat 2004944  T
Q  279 g 279  Q
    |    
T  2004945 g 2004945  T

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Target: chr4; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 2004635 - 2004781
Alignment:
Q  1 gttttgttttagagaggttttaagttagagtgttgcagaagttgtatgagtttcaaaat-------------------actatatacatagcttccgaat 81  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||                   ||||||||||||||||||||||    
T  2004635 gttttgttttagagaggttttaagttagagtgttacagaagttgtatgagtttcaaaattcttctaatacttatacatactatatacatagcttccgaat 2004734  T
Q  82 gtgtctgaaatgatcattttaaaaatgtgcaaaaatgggaggccgct 128  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  2004735 gtgtctgaaatgatcattttaaaaatgtgcaaaaatgggaggccgct 2004781  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 124
Target Start/End: Original strand, 2032828 - 2032873
Alignment:
Q  79 aatgtgtctgaaatgatcattttaaaaatgtgcaaaaatgggaggc 124  Q
    ||||||| |||||||||| |||| ||||||||||||| ||||||||    
T  2032828 aatgtgtatgaaatgatctttttgaaaatgtgcaaaattgggaggc 2032873  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 163
Target Start/End: Original strand, 2016226 - 2016254
Alignment:
Q  135 taagaaattttgcaaaagaataaaataaa 163  Q
    |||||||||||||||||||||||||||||    
T  2016226 taagaaattttgcaaaagaataaaataaa 2016254  T

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Target: chr6 (Bit Score: 86; Significance: 4e-41; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 178 - 267
Target Start/End: Complemental strand, 25422270 - 25422181
Alignment:
Q  178 ctagagttgagagaaaacatcaatccattttaaatatcactagagctttactttttcaatcacatttacctaaaagtttttggtcttatg 267  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25422270 ctagagttgagagaaaacatcaatctattttaaatatcactagagctttactttttcaatcacatttacctaaaagtttttggtcttatg 25422181  T

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Target: chr6; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 179 - 279
Target Start/End: Complemental strand, 5375078 - 5374978
Alignment:
Q  179 tagagttgagagaaaacatcaatccattttaaatatcactagagctttactttttcaatcacatttacctaaaagtttttggtcttatgctgcagttcat 278  Q
    |||| ||||||||||||| |||  |||||||||  | |||||| ||||||| |||||||| ||||| ||||| | |||||||||||||||||||||||||    
T  5375078 tagaattgagagaaaacaccaacacattttaaactttactagaactttactctttcaatctcatttgcctaagaatttttggtcttatgctgcagttcat 5374979  T
Q  279 g 279  Q
    |    
T  5374978 g 5374978  T

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Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 178 - 271
Target Start/End: Original strand, 34823933 - 34824026
Alignment:
Q  178 ctagagttgagagaaaacatcaatccattttaaatatcactagagctttactttttcaatcacatttacctaaaagtttttggtcttatgctgc 271  Q
    |||||||||| ||||||||||||  ||||||||| ||    |||||||||||||||||||||||| | ||||||  ||||||||||||||||||    
T  34823933 ctagagttgaaagaaaacatcaacacattttaaacattgtgagagctttactttttcaatcacatcttcctaaacatttttggtcttatgctgc 34824026  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 271
Target Start/End: Original strand, 33459775 - 33459868
Alignment:
Q  178 ctagagttgagagaaaacatcaatccattttaaatatcactagagctttactttttcaatcacatttacctaaaagtttttggtcttatgctgc 271  Q
    |||||||||| |||||||||| |  ||||||||| ||    ||||||||||||||||||||| || | ||||||   |||||||||||||||||    
T  33459775 ctagagttgaaagaaaacatcgacacattttaaacattgtgagagctttactttttcaatcaaatcttcctaaacaattttggtcttatgctgc 33459868  T

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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 189 - 269
Target Start/End: Complemental strand, 19472798 - 19472718
Alignment:
Q  189 agaaaacatcaatccattttaaatatcactagagctttactttttcaatcacatttacctaaaagtttttggtcttatgct 269  Q
    ||||||||||||  ||||||||| ||||| |||||||||| |||||||||||||||||| || | ||||||||| ||||||    
T  19472798 agaaaacatcaacacattttaaacatcaccagagctttacattttcaatcacatttacccaagaatttttggtcgtatgct 19472718  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 178 - 271
Target Start/End: Original strand, 37192212 - 37192305
Alignment:
Q  178 ctagagttgagagaaaacatcaatccattttaaatatcactagagctttactttttcaatcacatttacctaaaagtttttggtcttatgctgc 271  Q
    |||||||||| ||||||||||||  ||||||||| ||    |||||||||||||||||||||||| | ||||||   |||||||||||||||||    
T  37192212 ctagagttgaaagaaaacatcaacacattttaaacattgtgagagctttactttttcaatcacatcttcctaaacaattttggtcttatgctgc 37192305  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 189 - 267
Target Start/End: Original strand, 20076689 - 20076767
Alignment:
Q  189 agaaaacatcaatccattttaaatatcactagagctttactttttcaatcacatttacctaaaagtttttggtcttatg 267  Q
    ||||||||||||  ||||||||| ||||| |||||||| |||||||||||||||||||| || | ||||||||| ||||    
T  20076689 agaaaacatcaacacattttaaacatcaccagagctttgctttttcaatcacatttacccaagaatttttggtcatatg 20076767  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 271
Target Start/End: Original strand, 2996638 - 2996731
Alignment:
Q  178 ctagagttgagagaaaacatcaatccattttaaatatcactagagctttactttttcaatcacatttacctaaaagtttttggtcttatgctgc 271  Q
    |||||||||| ||||||||||||  ||||||||| ||    ||||||||||||||||||||| || | ||||||   |||||||||||||||||    
T  2996638 ctagagttgaaagaaaacatcaacacattttaaacattgtgagagctttactttttcaatcaaatcttcctaaacaattttggtcttatgctgc 2996731  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 271
Target Start/End: Complemental strand, 25575918 - 25575850
Alignment:
Q  203 cattttaaatatcactagagctttactttttcaatcacatttacctaaaagtttttggtcttatgctgc 271  Q
    |||||| || || ||||||||| | ||||||||||| |||||||| ||||  |||||||| ||||||||    
T  25575918 cattttgaacattactagagctcttctttttcaatctcatttacccaaaaaattttggtcctatgctgc 25575850  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 271
Target Start/End: Complemental strand, 18499889 - 18499821
Alignment:
Q  203 cattttaaatatcactagagctttactttttcaatcacatttacctaaaagtttttggtcttatgctgc 271  Q
    |||||| || || ||||||||| | ||||||||||| |||||||| |||| ||||||||| ||||||||    
T  18499889 cattttgaacattactagagctcttctttttcaatctcatttacccaaaactttttggtcctatgctgc 18499821  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 271
Target Start/End: Complemental strand, 26361560 - 26361492
Alignment:
Q  203 cattttaaatatcactagagctttactttttcaatcacatttacctaaaagtttttggtcttatgctgc 271  Q
    |||||| || || ||||||||| | ||||||||||| |||||||| |||| ||||||||| ||||||||    
T  26361560 cattttgaacattactagagctcttctttttcaatctcatttacccaaaactttttggtcctatgctgc 26361492  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 216 - 267
Target Start/End: Original strand, 19571331 - 19571382
Alignment:
Q  216 actagagctttactttttcaatcacatttacctaaaagtttttggtcttatg 267  Q
    ||||||| ||| |||||||||||| ||||||| |||| ||||||||||||||    
T  19571331 actagagatttgctttttcaatcaaatttacccaaaactttttggtcttatg 19571382  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 29839433 - 29839377
Alignment:
Q  1 gttttgttttagagaggttttaagttagagtgttgcagaagttgtatgagtttcaaa 57  Q
    ||||||| || |||| ||||| ||||||||||||  ||||||||| |||||||||||    
T  29839433 gttttgtcttggagatgtttttagttagagtgttagagaagttgtttgagtttcaaa 29839377  T

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Target: scaffold0779 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0779
Description:

Target: scaffold0779; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 271
Target Start/End: Original strand, 3999 - 4067
Alignment:
Q  203 cattttaaatatcactagagctttactttttcaatcacatttacctaaaagtttttggtcttatgctgc 271  Q
    |||||| || || ||||||||| | ||||||||||| |||||||| ||||  |||||||| ||||||||    
T  3999 cattttgaacattactagagctcttctttttcaatctcatttacccaaaaaattttggtcctatgctgc 4067  T

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