View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8950_low_77 (Length: 293)
Name: NF8950_low_77
Description: NF8950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8950_low_77 |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 17 - 281
Target Start/End: Complemental strand, 25612164 - 25611900
Alignment:
| Q |
17 |
attaacatatcctgtgcttcgattagttagttatcaatatatttttccatttcaataaagaaaagtctgggatacttttagaatttttactgagctaggg |
116 |
Q |
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| T |
25612164 |
attaacatatcctctgctatgattagttagttatcaatatatttttccatttcaataaagaaaagtctgggatacttttagaatttttactgagctaggg |
25612065 |
T |
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| Q |
117 |
ggtgatttgcttaggaataggcattactcggttaaatccggtattaaccttattgcgaggcacaaattgcataacgacaaattctatgcagaaggtgatt |
216 |
Q |
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| T |
25612064 |
ggtgattcgcttaggaataggcattactcggttaaatccggtattaaccttattgcgaggcacaaattgcataacgacaaattctatgcagaaggtgatt |
25611965 |
T |
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| Q |
217 |
gaaatgatgtacggcaagtccttgctccacctaaacctaaatatctgttgtggcgcatttgtctg |
281 |
Q |
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| T |
25611964 |
gaaatgatgtatggcaagtccttgctccacctaaacctaaatatctgttgtggcgcatttatctg |
25611900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 19 - 279
Target Start/End: Original strand, 25616073 - 25616330
Alignment:
| Q |
19 |
taacatatcctgtgcttcgattagttagttatcaatatatttttccatttcaataaagaaaagtctgggatacttttagaatttttactgagctaggggg |
118 |
Q |
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|||| |||||||||||| | |||||||||||||||||| ||| ||||||||| |||||| ||| |||||| |||||||||||| ||||||||||||||| |
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| T |
25616073 |
taacgtatcctgtgctttggttagttagttatcaatatggtttgccatttcaaaaaagaagagtatgggattcttttagaatttctactgagctaggggg |
25616172 |
T |
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| Q |
119 |
tgatttgcttaggaataggcattactcggttaaatccggtattaaccttattgcgaggcacaaattgcataacgacaaattctatgcagaaggtgattga |
218 |
Q |
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| T |
25616173 |
tgattctcttaggaatgggcgttactcggttaaatccaactacaaccttcttacgagggacatattgcataacgacaaattttatgc---aggtgattga |
25616269 |
T |
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| Q |
219 |
aatgatgtacggcaagtccttgctccacctaaacctaaatatctgttgtggcgcatttgtc |
279 |
Q |
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| T |
25616270 |
aatgatgtgtggcgagtccttgctacacctaaagctaaaaatttgttgtggcacatttgtc |
25616330 |
T |
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