View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8950_low_78 (Length: 287)

Name: NF8950_low_78
Description: NF8950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8950_low_78
NF8950_low_78
[»] chr2 (26 HSPs)
chr2 (19-287)||(29698227-29698495)
chr2 (176-287)||(19174843-19174954)
chr2 (175-283)||(8192356-8192464)
chr2 (175-287)||(35171880-35171993)
chr2 (168-287)||(30466827-30466947)
chr2 (168-274)||(11941207-11941313)
chr2 (168-235)||(25293292-25293359)
chr2 (175-287)||(15038039-15038152)
chr2 (178-287)||(34516421-34516530)
chr2 (175-287)||(44946057-44946170)
chr2 (168-228)||(41329982-41330042)
chr2 (178-287)||(3943820-3943930)
chr2 (175-274)||(13266584-13266682)
chr2 (168-287)||(19605843-19605962)
chr2 (175-233)||(14486960-14487018)
chr2 (190-287)||(18708557-18708655)
chr2 (175-287)||(33827577-33827690)
chr2 (175-287)||(24196084-24196195)
chr2 (247-287)||(4618762-4618802)
chr2 (207-287)||(5861328-5861408)
chr2 (178-287)||(36242319-36242429)
chr2 (175-287)||(28668953-28669066)
chr2 (226-287)||(23223735-23223796)
chr2 (175-235)||(2140490-2140550)
chr2 (239-279)||(3405221-3405261)
chr2 (175-235)||(31778164-31778224)
[»] chr5 (31 HSPs)
chr5 (168-287)||(19145409-19145528)
chr5 (175-287)||(19456215-19456327)
chr5 (176-287)||(24158171-24158283)
chr5 (175-287)||(32059444-32059557)
chr5 (175-258)||(41351108-41351191)
chr5 (175-287)||(27498735-27498848)
chr5 (168-287)||(36895505-36895625)
chr5 (176-287)||(38684288-38684399)
chr5 (168-287)||(11926498-11926619)
chr5 (175-287)||(8484665-8484778)
chr5 (175-287)||(18207287-18207400)
chr5 (178-287)||(10869572-10869682)
chr5 (175-287)||(4603857-4603970)
chr5 (175-287)||(7085630-7085743)
chr5 (175-287)||(15641110-15641222)
chr5 (175-287)||(30485908-30486021)
chr5 (176-287)||(35425093-35425205)
chr5 (168-235)||(22693068-22693135)
chr5 (168-287)||(6014277-6014397)
chr5 (176-287)||(11464913-11465024)
chr5 (175-275)||(22648115-22648215)
chr5 (175-235)||(37495187-37495247)
chr5 (168-287)||(930483-930601)
chr5 (168-227)||(10837437-10837496)
chr5 (168-287)||(27487551-27487672)
chr5 (175-287)||(31287950-31288063)
chr5 (182-235)||(5067394-5067447)
chr5 (168-287)||(23270519-23270639)
chr5 (168-221)||(25750610-25750663)
chr5 (175-258)||(22392797-22392881)
chr5 (175-235)||(38630983-38631043)
[»] chr7 (30 HSPs)
chr7 (175-287)||(23330743-23330856)
chr7 (175-287)||(654709-654821)
chr7 (175-287)||(2751355-2751468)
chr7 (175-287)||(7275361-7275474)
chr7 (175-284)||(21574106-21574216)
chr7 (176-287)||(1766149-1766260)
chr7 (175-287)||(22119972-22120085)
chr7 (175-287)||(28089900-28090016)
chr7 (175-287)||(40542914-40543027)
chr7 (175-287)||(31273998-31274110)
chr7 (179-287)||(7175870-7175979)
chr7 (175-287)||(21835235-21835348)
chr7 (175-287)||(23092180-23092293)
chr7 (168-287)||(3851841-3851961)
chr7 (168-287)||(17196947-17197067)
chr7 (178-287)||(22703570-22703680)
chr7 (175-287)||(11997933-11998046)
chr7 (168-287)||(18044191-18044311)
chr7 (175-287)||(28647053-28647166)
chr7 (175-235)||(2344436-2344496)
chr7 (247-287)||(8435772-8435812)
chr7 (175-235)||(16374131-16374191)
chr7 (168-271)||(22696419-22696525)
chr7 (175-235)||(27312289-27312349)
chr7 (175-234)||(31712906-31712965)
chr7 (168-287)||(27009443-27009564)
chr7 (175-287)||(29861754-29861867)
chr7 (247-287)||(1469196-1469236)
chr7 (175-258)||(22638401-22638485)
chr7 (175-274)||(43785303-43785402)
[»] chr1 (30 HSPs)
chr1 (168-287)||(24122103-24122223)
chr1 (184-287)||(16899583-16899687)
chr1 (175-287)||(4621241-4621354)
chr1 (175-287)||(15059406-15059519)
chr1 (175-287)||(17935849-17935962)
chr1 (176-287)||(16539688-16539799)
chr1 (175-287)||(1378978-1379090)
chr1 (175-287)||(1486498-1486613)
chr1 (176-287)||(24674473-24674585)
chr1 (175-287)||(32729625-32729737)
chr1 (168-287)||(9926143-9926263)
chr1 (175-287)||(7197251-7197363)
chr1 (175-256)||(37351457-37351538)
chr1 (171-287)||(1095004-1095120)
chr1 (206-287)||(8077727-8077809)
chr1 (237-287)||(1138659-1138709)
chr1 (168-218)||(5315481-5315531)
chr1 (175-287)||(7766731-7766844)
chr1 (247-287)||(809302-809342)
chr1 (251-287)||(19034467-19034503)
chr1 (168-235)||(35138121-35138188)
chr1 (175-287)||(7578489-7578602)
chr1 (175-287)||(9500359-9500472)
chr1 (175-287)||(30677256-30677369)
chr1 (176-287)||(18646933-18647045)
chr1 (178-287)||(23734196-23734307)
chr1 (178-287)||(23741388-23741499)
chr1 (246-287)||(25237065-25237106)
chr1 (175-235)||(22910004-22910064)
chr1 (175-235)||(46607943-46608003)
[»] scaffold0576 (1 HSPs)
scaffold0576 (175-287)||(5086-5199)
[»] chr8 (32 HSPs)
chr8 (183-280)||(28908914-28909012)
chr8 (168-287)||(18128597-18128717)
chr8 (175-287)||(3734627-3734740)
chr8 (175-287)||(4718729-4718842)
chr8 (175-287)||(8765530-8765643)
chr8 (168-287)||(21603314-21603434)
chr8 (175-274)||(19471707-19471807)
chr8 (175-274)||(19542631-19542731)
chr8 (175-274)||(19589965-19590065)
chr8 (175-287)||(34237659-34237772)
chr8 (206-287)||(20505637-20505718)
chr8 (176-287)||(264405-264516)
chr8 (176-287)||(651405-651516)
chr8 (176-287)||(837140-837251)
chr8 (178-287)||(13749139-13749250)
chr8 (178-287)||(39349340-39349450)
chr8 (175-287)||(28193558-28193671)
chr8 (175-287)||(42328088-42328201)
chr8 (175-259)||(2639415-2639500)
chr8 (168-287)||(6953005-6953124)
chr8 (170-287)||(42643117-42643235)
chr8 (175-287)||(2618270-2618383)
chr8 (175-287)||(15259410-15259523)
chr8 (175-287)||(20305992-20306105)
chr8 (175-287)||(21092625-21092738)
chr8 (209-287)||(34639246-34639324)
chr8 (168-274)||(2166795-2166900)
chr8 (206-287)||(3403537-3403619)
chr8 (246-287)||(34694652-34694693)
chr8 (246-287)||(41070845-41070886)
chr8 (175-219)||(5740387-5740431)
chr8 (175-287)||(24018466-24018580)
[»] chr6 (22 HSPs)
chr6 (175-287)||(15360102-15360215)
chr6 (175-287)||(3222640-3222752)
chr6 (175-287)||(17225747-17225859)
chr6 (175-287)||(10377795-10377909)
chr6 (175-287)||(654150-654263)
chr6 (175-287)||(34147426-34147539)
chr6 (175-287)||(34160042-34160155)
chr6 (175-287)||(21148515-21148627)
chr6 (175-287)||(11448951-11449064)
chr6 (168-287)||(9690635-9690755)
chr6 (196-287)||(12390505-12390597)
chr6 (168-287)||(9208332-9208452)
chr6 (168-287)||(33499555-33499675)
chr6 (175-287)||(1345015-1345128)
chr6 (180-278)||(3907629-3907727)
chr6 (175-287)||(21982325-21982437)
chr6 (175-235)||(9239108-9239168)
chr6 (178-287)||(11007245-11007355)
chr6 (175-287)||(17081058-17081171)
chr6 (175-287)||(17149460-17149573)
chr6 (180-228)||(8479437-8479485)
chr6 (175-274)||(9844032-9844131)
[»] scaffold0160 (1 HSPs)
scaffold0160 (168-285)||(29140-29257)
[»] chr4 (29 HSPs)
chr4 (176-283)||(13771487-13771596)
chr4 (186-287)||(22630204-22630303)
chr4 (175-287)||(27528799-27528912)
chr4 (175-287)||(34844762-34844875)
chr4 (175-287)||(40058856-40058969)
chr4 (175-287)||(19660536-19660649)
chr4 (168-287)||(25852294-25852415)
chr4 (175-287)||(34723879-34723992)
chr4 (175-287)||(52983699-52983812)
chr4 (168-287)||(20566430-20566550)
chr4 (175-287)||(28791195-28791307)
chr4 (175-287)||(45787708-45787821)
chr4 (179-287)||(49287938-49288046)
chr4 (179-287)||(54127350-54127459)
chr4 (168-287)||(33696276-33696396)
chr4 (175-287)||(5609206-5609319)
chr4 (175-287)||(20077988-20078101)
chr4 (175-287)||(32986277-32986390)
chr4 (179-287)||(32990515-32990624)
chr4 (175-287)||(44343594-44343707)
chr4 (168-268)||(3391443-3391544)
chr4 (175-279)||(9646220-9646325)
chr4 (175-287)||(12710259-12710370)
chr4 (177-287)||(53787063-53787175)
chr4 (178-287)||(22488035-22488145)
chr4 (175-287)||(46714473-46714586)
chr4 (180-287)||(9517650-9517758)
chr4 (246-287)||(39288939-39288979)
chr4 (169-233)||(52494623-52494687)
[»] chr3 (40 HSPs)
chr3 (175-287)||(15566504-15566616)
chr3 (168-287)||(52821633-52821752)
chr3 (175-287)||(48977468-48977581)
chr3 (168-287)||(49258259-49258379)
chr3 (175-274)||(24165719-24165817)
chr3 (175-287)||(10190746-10190859)
chr3 (175-287)||(26174193-26174306)
chr3 (175-287)||(40133453-40133566)
chr3 (168-287)||(35492991-35493111)
chr3 (175-287)||(53424181-53424293)
chr3 (175-287)||(1178252-1178363)
chr3 (175-287)||(8097283-8097396)
chr3 (175-287)||(8456154-8456267)
chr3 (175-287)||(10083823-10083936)
chr3 (175-287)||(32151504-32151617)
chr3 (168-287)||(18176884-18177004)
chr3 (168-287)||(39041849-39041969)
chr3 (175-258)||(48104986-48105070)
chr3 (176-287)||(30695251-30695366)
chr3 (168-234)||(24407395-24407461)
chr3 (175-287)||(25289719-25289831)
chr3 (179-287)||(25379841-25379950)
chr3 (175-287)||(45272420-45272533)
chr3 (175-287)||(46576428-46576541)
chr3 (175-287)||(53233915-53234027)
chr3 (179-256)||(55371302-55371380)
chr3 (207-287)||(1242053-1242134)
chr3 (168-287)||(21363023-21363143)
chr3 (175-287)||(8958039-8958153)
chr3 (175-287)||(30807157-30807270)
chr3 (168-287)||(53288710-53288829)
chr3 (175-235)||(53848438-53848498)
chr3 (176-235)||(26158944-26159003)
chr3 (176-274)||(30257718-30257816)
chr3 (169-228)||(50731235-50731294)
chr3 (169-228)||(50781560-50781619)
chr3 (168-258)||(1692943-1693033)
chr3 (175-287)||(45529759-45529871)
chr3 (175-259)||(33698710-33698795)
chr3 (168-272)||(54475777-54475881)
[»] scaffold0217 (1 HSPs)
scaffold0217 (168-287)||(7306-7426)
[»] scaffold0049 (1 HSPs)
scaffold0049 (168-258)||(66863-66954)
[»] scaffold1175 (1 HSPs)
scaffold1175 (168-274)||(2423-2529)
[»] scaffold0070 (1 HSPs)
scaffold0070 (175-287)||(40405-40517)
[»] scaffold0019 (1 HSPs)
scaffold0019 (175-287)||(161889-162002)
[»] scaffold0102 (1 HSPs)
scaffold0102 (175-287)||(39172-39285)
[»] scaffold0026 (1 HSPs)
scaffold0026 (168-287)||(97363-97483)
[»] scaffold0068 (1 HSPs)
scaffold0068 (179-274)||(41653-41747)


Alignment Details
Target: chr2 (Bit Score: 178; Significance: 5e-96; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 19 - 287
Target Start/End: Complemental strand, 29698495 - 29698227
Alignment:
Q  19 ggtaggggtagaaaactttgtttctttcggttattggaaaccctttctattatcttatcttcatttcatgttcatggaattaacccttgaaggtgacttg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29698495 ggtaggggtagaaaactttgtttctttcggttattggaaaccctttctattatcttatcttcatttcatgttcatggaattaacccttgaaggtgacttg 29698396  T
Q  119 aaacacatggtcattgtacgattttatcttgatagtcnnnnnnnnnctctttaaacctcggtatccgatccaagtaccgacttatcagaggggaccaatc 218  Q
    ||||||||||||||||||||||||||||||||||||          ||  ||||| |||||||| ||||| ||| ||| ||||||  |||||||||||||    
T  29698395 aaacacatggtcattgtacgattttatcttgatagtttttttttttcttcttaaaactcggtatacgatctaaggaccaacttattcgaggggaccaatc 29698296  T
Q  219 tcatcgcccatttgcggagccctgttttaagccagagcaaagctttgtatggacttgcccaccgaaatt 287  Q
    ||||||||||||||||| | ||||||||||| ||||| |||||| |||||| |||||||||||||||||    
T  29698295 tcatcgcccatttgcggggtcctgttttaagtcagagtaaagctctgtatgaacttgcccaccgaaatt 29698227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 176 - 287
Target Start/End: Complemental strand, 19174954 - 19174843
Alignment:
Q  176 tcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgcggagccctgttttaagccagagcaaagctttgtatggacttg 275  Q
    ||||||||||||||||| ||||| | ||| ||||||| ||||| || ||||||||| ||| || | ||| ||||||||||||||||| ||||||||| |     
T  19174954 tcggtatccgatccaaggaccgattaatccgaggggatcaatcccaccgcccatttacggggctccgttctaagccagagcaaagctctgtatggaccta 19174855  T
Q  276 cccaccgaaatt 287  Q
    ||||||||||||    
T  19174854 cccaccgaaatt 19174843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 175 - 283
Target Start/End: Original strand, 8192356 - 8192464
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgcggagccctgttttaagccagagcaaagctttgtatggactt 274  Q
    |||||||||||||||||| ||||||| ||| |||||| |||||| || |||||| |||||  |  | ||| ||||||||||||||||| | |||||||||    
T  8192356 ctcggtatccgatccaaggaccgactaatccgaggggcccaatcccaccgcccacttgcgaggggccgttctaagccagagcaaagctctatatggactt 8192455  T
Q  275 gcccaccga 283  Q
    |||||||||    
T  8192456 gcccaccga 8192464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 175 - 287
Target Start/End: Complemental strand, 35171993 - 35171880
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgtatggact 273  Q
    ||||||||||||| |||| | ||||| ||| ||||||||||||| || |||||| |||| || |||| |||| |||||||||| ||||| ||||||||||    
T  35171993 ctcggtatccgattcaagaatcgactaatccgaggggaccaatcccaccgcccacttgcgggggccccgtttaaagccagagc-aagctctgtatggact 35171895  T
Q  274 t-gcccaccgaaatt 287  Q
    | |||||||||||||    
T  35171894 tagcccaccgaaatt 35171880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 168 - 287
Target Start/End: Original strand, 30466827 - 30466947
Alignment:
Q  168 tttaaacctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgt 266  Q
    |||||| |||||||||||||||||| | ||||| ||| || |||||||||| ||  ||||| |||| || |||| |||| |||||||||| ||||| |||    
T  30466827 tttaaaactcggtatccgatccaagaatcgactaatccgaagggaccaatcccactgcccacttgcgggggcccggtttaaagccagagc-aagctctgt 30466925  T
Q  267 atggactt-gcccaccgaaatt 287  Q
    |||||||| |||||||||||||    
T  30466926 atggacttagcccaccgaaatt 30466947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 168 - 274
Target Start/End: Original strand, 11941207 - 11941313
Alignment:
Q  168 tttaaacctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgt 266  Q
    |||||| |||||||||||||||||| | ||||| ||| ||||||||||||| || |||||| |||| || | || |||| |||||||||| ||||| |||    
T  11941207 tttaaaactcggtatccgatccaagaatcgactaatccgaggggaccaatcccaccgcccacttgcgggggtcccgtttaaagccagagc-aagctctgt 11941305  T
Q  267 atggactt 274  Q
    ||||||||    
T  11941306 atggactt 11941313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 168 - 235
Target Start/End: Complemental strand, 25293359 - 25293292
Alignment:
Q  168 tttaaacctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgcgg 235  Q
    |||||| |||||||||||||||||| | ||||| ||| ||||||||||||| ||||||||| ||||||    
T  25293359 tttaaaactcggtatccgatccaagaatcgactaatccgaggggaccaatcccatcgcccacttgcgg 25293292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 287
Target Start/End: Complemental strand, 15038152 - 15038039
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgtatggact 273  Q
    |||||||||||||||||| | ||||| ||| ||||||||||||| || |||||| |||| || || | |||| |||||| ||| ||||| ||||||||||    
T  15038152 ctcggtatccgatccaagaatcgactaatctgaggggaccaatcccaccgcccacttgcgggggctccgtttaaagccaaagc-aagctctgtatggact 15038054  T
Q  274 t-gcccaccgaaatt 287  Q
    | |||||||||||||    
T  15038053 tagcccaccgaaatt 15038039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 178 - 287
Target Start/End: Original strand, 34516421 - 34516530
Alignment:
Q  178 ggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgcggagccctgttttaagccagagcaaagctttgtatggactt-gc 276  Q
    ||||||||||||||| | ||||| ||| ||||||||||||| || |||||| |||| | | || |||| |||| ||||| ||||| ||||||||||| ||    
T  34516421 ggtatccgatccaagaatcgactaatccgaggggaccaatcccaccgcccacttgcaggggcccgtttaaagcgagagc-aagctctgtatggacttagc 34516519  T
Q  277 ccaccgaaatt 287  Q
    |||||||||||    
T  34516520 ccaccgaaatt 34516530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 287
Target Start/End: Original strand, 44946057 - 44946170
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgtatggact 273  Q
    |||||||||||||||||| | ||||| ||| ||||||||||||| || |||||| |||| || | || |||| |||||||||| ||| | ||||||||||    
T  44946057 ctcggtatccgatccaagaatcgactaatccgaggggaccaatcccaccgcccacttgcggggggcccgtttaaagccagagc-aagttctgtatggact 44946155  T
Q  274 t-gcccaccgaaatt 287  Q
    | |||||||||||||    
T  44946156 tagcccaccgaaatt 44946170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 168 - 228
Target Start/End: Complemental strand, 41330042 - 41329982
Alignment:
Q  168 tttaaacctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgccca 228  Q
    |||||| ||||||||||| |||||| ||||||| ||| |||||||||||||||| ||||||    
T  41330042 tttaaaactcggtatccggtccaagaaccgactaatctgaggggaccaatctcaccgccca 41329982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 178 - 287
Target Start/End: Complemental strand, 3943930 - 3943820
Alignment:
Q  178 ggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgtatggactt-g 275  Q
    ||||||||||||||  ||||||| |||  |||||||||||| || | |||| |||| ||||||| |||| |||||||||| ||||| ||||||||||| |    
T  3943930 ggtatccgatccaataaccgactaatccaaggggaccaatcccaccacccacttgcgggagccccgtttaaagccagagc-aagctctgtatggacttag 3943832  T
Q  276 cccaccgaaatt 287  Q
    || |||||||||    
T  3943831 ccaaccgaaatt 3943820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 175 - 274
Target Start/End: Complemental strand, 13266682 - 13266584
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgcggagccctgttttaagccagagcaaagctttgtatggactt 274  Q
    |||| ||||||||||||| | ||||| ||  ||||||||||||| |||  |||| |||||| |||| |||| |||||||||| ||||| |||||||||||    
T  13266682 ctcgatatccgatccaagaatcgactaatttgaggggaccaatcccattacccacttgcggggccccgtttaaagccagagc-aagctctgtatggactt 13266584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 168 - 287
Target Start/End: Original strand, 19605843 - 19605962
Alignment:
Q  168 tttaaacctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgcggagccctgttttaagccagagcaaagctttgta 267  Q
    |||||| |||| ||||||||||||||  | ||| ||  |||||||||||||||| |||||| ||| ||  |||  || ||||  |||||||  || ||||    
T  19605843 tttaaaactcgatatccgatccaagtgtcaactaattcgaggggaccaatctcaccgcccacttgtgggccccctttctaagtgagagcaagactctgta 19605942  T
Q  268 tggacttgcccaccgaaatt 287  Q
    ||||||||||||||||||||    
T  19605943 tggacttgcccaccgaaatt 19605962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 233
Target Start/End: Complemental strand, 14487018 - 14486960
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc 233  Q
    |||||||||||||||||| ||||||| ||| ||||||||||||| || |||||| ||||    
T  14487018 ctcggtatccgatccaaggaccgactaatccgaggggaccaatcccaccgcccacttgc 14486960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 287
Target Start/End: Complemental strand, 18708655 - 18708557
Alignment:
Q  190 aagtaccgacttatcagaggggaccaatctcatcgcccatttgcggagc-cctgttttaagccagagcaaagctttgtatggacttgcccaccgaaatt 287  Q
    ||||||||||| ||| ||||||| ||||| || || |||||||||| |  || |||||||| |||||||||||| |||||| || ||||||| ||||||    
T  18708655 aagtaccgactaatctgaggggatcaatcccaccgtccatttgcgggggtcccgttttaagtcagagcaaagctctgtatgaacatgcccactgaaatt 18708557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 287
Target Start/End: Original strand, 33827577 - 33827690
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgtatggact 273  Q
    |||||||||||||||||| | ||||| |||  |||||||||||| || |||||| |||| || | || |||| |||||||||| ||||| ||||||||||    
T  33827577 ctcggtatccgatccaagaatcgactaatccaaggggaccaatcccaccgcccacttgcaggggtcccgtttaaagccagagc-aagctctgtatggact 33827675  T
Q  274 t-gcccaccgaaatt 287  Q
    | ||||| |||||||    
T  33827676 tagcccaacgaaatt 33827690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 287
Target Start/End: Complemental strand, 24196195 - 24196084
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgcggagccctgttttaagccagagcaaagctttgtatggactt 274  Q
    |||||||||| ||| ||  | ||||| ||| ||||||||||||| || |||||| |||||| |||| |||| |||||||||| ||| | |||||||||||    
T  24196195 ctcggtatccaatcaaaaaatcgactaatccgaggggaccaatcccaccgcccacttgcggggccc-gtttaaagccagagc-aagttctgtatggactt 24196098  T
Q  275 -gcccaccgaaatt 287  Q
     |||||||||||||    
T  24196097 agcccaccgaaatt 24196084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 287
Target Start/End: Original strand, 4618762 - 4618802
Alignment:
Q  247 aagccagagcaaagctttgtatggacttgcccaccgaaatt 287  Q
    |||||||||||||| ||||||||||||||||| ||||||||    
T  4618762 aagccagagcaaagttttgtatggacttgcccgccgaaatt 4618802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 287
Target Start/End: Complemental strand, 5861408 - 5861328
Alignment:
Q  207 aggggaccaatctcatcgcccatttgcggagccctgttttaagccagagcaaagctttgtatggacttgcccaccgaaatt 287  Q
    ||||||| |||| || | |||| |||||||||||| ||| ||| || || ||||||||||||| ||||||||||| |||||    
T  5861408 aggggactaatcccaccacccacttgcggagccctatttaaagtcaaagtaaagctttgtatgaacttgcccaccaaaatt 5861328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 178 - 287
Target Start/End: Original strand, 36242319 - 36242429
Alignment:
Q  178 ggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgcggag-ccctgttttaagccagagcaaagctttgtatggactt-g 275  Q
    ||||||||||||||| | ||| | ||| ||||||||||||| || |||||| |||||| | ||| |||| |||||||||| ||||| ||  ||||||| |    
T  36242319 ggtatccgatccaagaatcgattaatccgaggggaccaatcccaccgcccacttgcggggaccccgtttaaagccagagc-aagctctggctggacttag 36242417  T
Q  276 cccaccgaaatt 287  Q
    ||||||||||||    
T  36242418 cccaccgaaatt 36242429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 287
Target Start/End: Complemental strand, 28669066 - 28668953
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttg-cggagccctgttttaagccagagcaaagctttgtatggact 273  Q
    |||||||||||||||||  | ||||| ||| ||||||||||||| || |||||| |||  || |||| |||| |||||| ||| ||||| ||||||||||    
T  28669066 ctcggtatccgatccaaaaatcgactaatccgaggggaccaatcccaccgcccacttgtgggggccccgtttaaagccaaagc-aagctctgtatggact 28668968  T
Q  274 t-gcccaccgaaatt 287  Q
    | | |||||||||||    
T  28668967 tagtccaccgaaatt 28668953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 287
Target Start/End: Original strand, 23223735 - 23223796
Alignment:
Q  226 ccatttgcggagccctgttttaagccagagcaaagctttgtatggacttgcccaccgaaatt 287  Q
    |||||||||| ||||||||| |||||||||||||||| | |||| ||  | |||||||||||    
T  23223735 ccatttgcggggccctgtttaaagccagagcaaagctctctatgcaccggtccaccgaaatt 23223796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 235
Target Start/End: Original strand, 2140490 - 2140550
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgcgg 235  Q
    |||||||||||||||||  | ||||| ||| ||||||||||||| || |||||| ||||||    
T  2140490 ctcggtatccgatccaataatcgactaatccgaggggaccaatcccaccgcccacttgcgg 2140550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 279
Target Start/End: Original strand, 3405221 - 3405261
Alignment:
Q  239 cctgttttaagccagagcaaagctttgtatggacttgccca 279  Q
    ||||||| |||| |||| |||||||||||||||||||||||    
T  3405221 cctgtttaaagctagagtaaagctttgtatggacttgccca 3405261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 235
Target Start/End: Complemental strand, 31778224 - 31778164
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgcgg 235  Q
    |||||||||||||||||| || |||| ||| ||| |||||||||||| || ||| ||||||    
T  31778224 ctcggtatccgatccaagaactgactaatctgagaggaccaatctcaccgtccacttgcgg 31778164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 31)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 168 - 287
Target Start/End: Original strand, 19145409 - 19145528
Alignment:
Q  168 tttaaacctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgcggagccctgttttaagccagagcaaagctttgta 267  Q
    |||||| |||||||||||||||||| ||| ||| ||| ||||||||||||| || |||||| |||||| |  |  ||| |||||||||||||||| ||||    
T  19145409 tttaaaactcggtatccgatccaagaaccaactaatccgaggggaccaatcccaccgcccacttgcgggggaccatttaaagccagagcaaagctctgta 19145508  T
Q  268 tggacttgcccaccgaaatt 287  Q
    ||||||||||||||||||||    
T  19145509 tggacttgcccaccgaaatt 19145528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 175 - 287
Target Start/End: Original strand, 19456215 - 19456327
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgcggagccctgttttaagccagagcaaagctttgtatggactt 274  Q
    |||||||||||||||||| | ||||| ||| ||||||||||||| || |||||| |||||| |||| |||| |||||||||| ||||| |||||||||||    
T  19456215 ctcggtatccgatccaagaatcgactaatccgaggggaccaatcccaccgcccacttgcggggccccgtttaaagccagagc-aagctctgtatggactt 19456313  T
Q  275 -gcccaccgaaatt 287  Q
     |||||||||||||    
T  19456314 agcccaccgaaatt 19456327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 176 - 287
Target Start/End: Original strand, 24158171 - 24158283
Alignment:
Q  176 tcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgcgga-gccctgttttaagccagagcaaagctttgtatggactt 274  Q
    |||||||||||| |||| ||||||| ||| |||||||||||||||| |||||| |||| || |||| ||| |||||||||| |||||| |||||||||||    
T  24158171 tcggtatccgattcaaggaccgactaatctgaggggaccaatctcaccgcccacttgcagaggccccgttctaagccagagtaaagctatgtatggactt 24158270  T
Q  275 gcccaccgaaatt 287  Q
     |||| |||||||    
T  24158271 acccatcgaaatt 24158283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 175 - 287
Target Start/End: Original strand, 32059444 - 32059557
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgtatggact 273  Q
    |||||||||||||||||| ||||||| ||| ||||||||||||| || |||||| |||| || |||| |||| |||||||||| ||||| ||||||||||    
T  32059444 ctcggtatccgatccaaggaccgactaatccgaggggaccaatcccaccgcccacttgcgggggccccgtttaaagccagagc-aagctctgtatggact 32059542  T
Q  274 t-gcccaccgaaatt 287  Q
    | |||||||||||||    
T  32059543 tagcccaccgaaatt 32059557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 175 - 258
Target Start/End: Original strand, 41351108 - 41351191
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgcggagccctgttttaagccagagcaa 258  Q
    |||||||||||||||||| | ||||| ||| ||||||||||||| || |||||| ||||||||||| |||| ||||||||||||    
T  41351108 ctcggtatccgatccaagaatcgactaatccgaggggaccaatcccaccgcccacttgcggagccccgtttaaagccagagcaa 41351191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 175 - 287
Target Start/End: Original strand, 27498735 - 27498848
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgtatggact 273  Q
    |||||||||||||||||| | ||||| ||| ||||||||||||| || |||||| |||| || |||| |||| |||||||||| ||||| ||||||||||    
T  27498735 ctcggtatccgatccaagaatcgactaatccgaggggaccaatcccaccgcccacttgcgggggccccgtttaaagccagagc-aagctatgtatggact 27498833  T
Q  274 t-gcccaccgaaatt 287  Q
    | |||||||||||||    
T  27498834 tagcccaccgaaatt 27498848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 168 - 287
Target Start/End: Complemental strand, 36895625 - 36895505
Alignment:
Q  168 tttaaacctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgcggagccct-gttttaagccagagcaaagctttgt 266  Q
    |||||| |||||||||||||||||| ||||||| ||  |||| || ||||| |  |||||| |||||| | |   ||| |||||||||||||||||||||    
T  36895625 tttaaaactcggtatccgatccaagaaccgactaattcgaggagaacaatccccccgcccacttgcggcggctacgttctaagccagagcaaagctttgt 36895526  T
Q  267 atggacttgcccaccgaaatt 287  Q
    ||||||||| |||||||||||    
T  36895525 atggacttgaccaccgaaatt 36895505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 176 - 287
Target Start/End: Complemental strand, 38684399 - 38684288
Alignment:
Q  176 tcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgcggagccctgttttaagccagagcaaagctttgtatggactt- 274  Q
    ||||||||||||||||| | ||||| ||| ||||||||||||| || ||| || |||||| | || |||| |||||||||| ||||| |||||||||||     
T  38684399 tcggtatccgatccaagaatcgactaatccgaggggaccaatcccaccgctcacttgcgggggcccgtttaaagccagagc-aagctctgtatggactta 38684301  T
Q  275 gcccaccgaaatt 287  Q
    |||||||||||||    
T  38684300 gcccaccgaaatt 38684288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 168 - 287
Target Start/End: Original strand, 11926498 - 11926619
Alignment:
Q  168 tttaaacctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc--ggagccctgttttaagccagagcaaagctttg 265  Q
    |||||| |||||||||||||||||| | ||||| ||| ||||||||||||| || | |||| ||||  || |||| |||| |||||||||| ||||| ||    
T  11926498 tttaaaactcggtatccgatccaagaatcgactaatccgaggggaccaatcccaccacccacttgcggggggccccgtttaaagccagagc-aagctctg 11926596  T
Q  266 tatggactt-gcccaccgaaatt 287  Q
    ||||||||| |||||||||||||    
T  11926597 tatggacttagcccaccgaaatt 11926619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 175 - 287
Target Start/End: Original strand, 8484665 - 8484778
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgtatggact 273  Q
    |||||||||||||||||| | ||||| ||| ||||||||||||| || |||||| |||| || |||| |||| |||||||||| ||||| |||||| |||    
T  8484665 ctcggtatccgatccaagaatcgactaatccgaggggaccaatcccaccgcccacttgcgggggccccgtttaaagccagagc-aagctctgtatgaact 8484763  T
Q  274 t-gcccaccgaaatt 287  Q
    | |||||||||||||    
T  8484764 tagcccaccgaaatt 8484778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 175 - 287
Target Start/End: Complemental strand, 18207400 - 18207287
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgcggagccct-gttttaagccagagcaaagctttgtatggact 273  Q
    |||||||||||||||||| | ||||| ||| ||||||||||||| || |||||| |||||| | ||| |||| |||||||| | ||||| ||||||||||    
T  18207400 ctcggtatccgatccaagaatcgactaatccgaggggaccaatcccaccgcccacttgcgggggcctcgtttaaagccagaac-aagctctgtatggact 18207302  T
Q  274 t-gcccaccgaaatt 287  Q
    | |||||||||||||    
T  18207301 tagcccaccgaaatt 18207287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 287
Target Start/End: Original strand, 10869572 - 10869682
Alignment:
Q  178 ggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgcgga-gccctgttttaagccagagcaaagctttgtatggactt-g 275  Q
    ||||||||||||||| ||||||| ||| ||||||||||||| || |||||| ||||||| ||||  ||| |||||||||| |||||  || ||||||| |    
T  10869572 ggtatccgatccaagaaccgactaatccgaggggaccaatcccaccgcccacttgcggaggccccatttaaagccagagc-aagctcagtgtggacttag 10869670  T
Q  276 cccaccgaaatt 287  Q
    ||||||||||||    
T  10869671 cccaccgaaatt 10869682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 287
Target Start/End: Complemental strand, 4603970 - 4603857
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgtatggact 273  Q
    |||||||||||||||||| ||||||| ||| ||||||||||||| || || ||| |||| || |||| |||| ||||||||||  |||| ||||||||||    
T  4603970 ctcggtatccgatccaaggaccgactaatccgaggggaccaatcccaccgtccacttgcaggggccccgtttaaagccagagc-gagctctgtatggact 4603872  T
Q  274 t-gcccaccgaaatt 287  Q
    | ||||| |||||||    
T  4603871 tagcccatcgaaatt 4603857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 287
Target Start/End: Original strand, 7085630 - 7085743
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgcggag-ccctgttttaagccagagcaaagctttgtatggact 273  Q
    ||||||||||||| |||| | ||||| ||| ||||||||||||| || |||||| |||||| | ||| |||| ||| |||||| ||||| ||||||||||    
T  7085630 ctcggtatccgattcaagaatcgactaatccgaggggaccaatcccaccgcccacttgcggggaccccgtttaaagtcagagc-aagctctgtatggact 7085728  T
Q  274 t-gcccaccgaaatt 287  Q
    | |||||||||||||    
T  7085729 tagcccaccgaaatt 7085743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 287
Target Start/End: Original strand, 15641110 - 15641222
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgtatggact 273  Q
    |||||||||||||| ||| | ||||| ||| ||||||||||||| || |||||| |||| || |||| |||| |||||||||| ||||| ||||||||||    
T  15641110 ctcggtatccgatc-aagaatcgactaatccgaggggaccaatcccaccgcccacttgcgggggccccgtttaaagccagagc-aagctctgtatggact 15641207  T
Q  274 t-gcccaccgaaatt 287  Q
    | |||||||||||||    
T  15641208 tagcccaccgaaatt 15641222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 287
Target Start/End: Complemental strand, 30486021 - 30485908
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgcggagccct-gttttaagccagagcaaagctttgtatggact 273  Q
    |||||||||||||||||| |  |||| ||| ||||||||||||| || |||||| |||||| | | | |||| |||||||||| ||||| ||||||||||    
T  30486021 ctcggtatccgatccaagaattgactaatccgaggggaccaatcccaccgcccacttgcgggggcatcgtttaaagccagagc-aagctctgtatggact 30485923  T
Q  274 t-gcccaccgaaatt 287  Q
    | |||||||||||||    
T  30485922 tagcccaccgaaatt 30485908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 176 - 287
Target Start/End: Complemental strand, 35425205 - 35425093
Alignment:
Q  176 tcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgtatggactt 274  Q
    ||||||||||||||||| | ||||| ||| ||| ||||||||| || |||||| |||| || |||| |||| ||||||||||  |||| |||||||||||    
T  35425205 tcggtatccgatccaagaatcgactaatccgagaggaccaatcccaccgcccacttgcgggggccccgtttaaagccagagc-gagctctgtatggactt 35425107  T
Q  275 -gcccaccgaaatt 287  Q
     |||||||||||||    
T  35425106 agcccaccgaaatt 35425093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 168 - 235
Target Start/End: Complemental strand, 22693135 - 22693068
Alignment:
Q  168 tttaaacctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgcgg 235  Q
    |||||| |||||||||||||||||| | ||||| ||| ||||||||||||| || |||||| ||||||    
T  22693135 tttaaaactcggtatccgatccaagaatcgactaatccgaggggaccaatcccaccgcccacttgcgg 22693068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 168 - 287
Target Start/End: Original strand, 6014277 - 6014397
Alignment:
Q  168 tttaaacctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgcg-gagccctgttttaagccagagcaaagctttgt 266  Q
    |||||| |||| ||||||||||||| | ||||| ||  |||||||| ||||||| |||||| ||||| |  ||| |||| |||||||||| ||||| |||    
T  6014277 tttaaaactcgatatccgatccaagaatcgactaattcgaggggactaatctcaccgcccacttgcgtggaccccgtttaaagccagagc-aagctctgt 6014375  T
Q  267 atggactt-gcccaccgaaatt 287  Q
    ||||||||  ||||||||||||    
T  6014376 atggacttaacccaccgaaatt 6014397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 287
Target Start/End: Original strand, 11464913 - 11465024
Alignment:
Q  176 tcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgcggagccctgttttaagccagagcaaagctttgtatggactt- 274  Q
    ||||||||||||||||| | ||||| ||  ||||||||||||| || | |||| |||||| |||| |||| |||||||||  ||||| |||||| ||||     
T  11464913 tcggtatccgatccaagaatcgactaattcgaggggaccaatcccaccacccacttgcggggccccgtttaaagccagag-taagctctgtatgaactta 11465011  T
Q  275 gcccaccgaaatt 287  Q
    ||||||| |||||    
T  11465012 gcccaccaaaatt 11465024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 275
Target Start/End: Complemental strand, 22648215 - 22648115
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgcggagccctgttttaagccagagcaaagctttgtatggactt 274  Q
    |||||||||||||||||  ||||||| ||| ||||||| ||||| || |   || ||||||  ||||||| ||||  | |||||||||||||||||||||    
T  22648215 ctcggtatccgatccaaagaccgactaatctgaggggatcaatcccaccattcacttgcgggaccctgttctaagttaaagcaaagctttgtatggactt 22648116  T
Q  275 g 275  Q
    |    
T  22648115 g 22648115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 235
Target Start/End: Complemental strand, 37495247 - 37495187
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgcgg 235  Q
    |||||||||||||||||| | ||||| ||| ||||||||||||| || |||||| ||||||    
T  37495247 ctcggtatccgatccaagaatcgactaatccgaggggaccaatcccaccgcccacttgcgg 37495187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 168 - 287
Target Start/End: Original strand, 930483 - 930601
Alignment:
Q  168 tttaaacctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgcggagccctgttttaagccagagcaaagctttgta 267  Q
    |||||| |||| ||||||||||||| ||||||| ||| ||||||||||||| ||  | ||| |||||  | | |||| |||||| |||| ||||| ||||    
T  930483 tttaaaactcgatatccgatccaaggaccgactaatccgaggggaccaatcacactgtccacttgcgagggcttgttctaagccggagc-aagctatgta 930581  T
Q  268 tggacttgcccaccgaaatt 287  Q
    || | ||| |||||||||||    
T  930582 tgaatttgtccaccgaaatt 930601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 168 - 227
Target Start/End: Complemental strand, 10837496 - 10837437
Alignment:
Q  168 tttaaacctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgccc 227  Q
    |||||| |||||||||||||| ||| ||| ||| ||| |||||||||||||||| |||||    
T  10837496 tttaaaactcggtatccgatctaaggaccaactaatctgaggggaccaatctcaccgccc 10837437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 168 - 287
Target Start/End: Original strand, 27487551 - 27487672
Alignment:
Q  168 tttaaacctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc--ggagccctgttttaagccagagcaaagctttg 265  Q
    |||||| ||| |||||||||||||| | ||||| ||| ||||||||||||| || |||||| ||||  ||  ||| |||| |||| ||||| ||||| ||    
T  27487551 tttaaaactctgtatccgatccaagaatcgactaatccgaggggaccaatcccaccgcccacttgcaagggcccccgtttaaagctagagc-aagctctg 27487649  T
Q  266 tatggactt-gcccaccgaaatt 287  Q
    ||||||||| | |||||||||||    
T  27487650 tatggacttagtccaccgaaatt 27487672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 287
Target Start/End: Original strand, 31287950 - 31288063
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgtatggact 273  Q
    ||||||||||| |||||| ||||||| ||  |||| |||||||| || |||||| |||| || |||| |||| ||| || ||| ||||||||||||||||    
T  31287950 ctcggtatccggtccaagaaccgactaattcgaggagaccaatcccaccgcccacttgcgggggccccgtttaaagtcaaagc-aagctttgtatggact 31288048  T
Q  274 t-gcccaccgaaatt 287  Q
    |  ||||||||||||    
T  31288049 taacccaccgaaatt 31288063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 235
Target Start/End: Complemental strand, 5067447 - 5067394
Alignment:
Q  182 tccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgcgg 235  Q
    ||||||||||| | ||||| ||||||||||||||||| || |||||| ||||||    
T  5067447 tccgatccaagaatcgactaatcagaggggaccaatcccaccgcccacttgcgg 5067394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 287
Target Start/End: Original strand, 23270519 - 23270639
Alignment:
Q  168 tttaaacctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgt 266  Q
    |||||| || ||||||| ||||||| | | ||| ||| ||||||||||||| || || |||||||| || || | |||| |||||| ||| ||||| |||    
T  23270519 tttaaaacttggtatccaatccaagaatcaactaatccgaggggaccaatcccaccgtccatttgcgggggctccgtttaaagccaaagc-aagctctgt 23270617  T
Q  267 atggactt-gcccaccgaaatt 287  Q
    |||||||| |||||||||||||    
T  23270618 atggacttagcccaccgaaatt 23270639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 221
Target Start/End: Original strand, 25750610 - 25750663
Alignment:
Q  168 tttaaacctcggtatccgatccaagtaccgacttatcagaggggaccaatctca 221  Q
    |||||| |||||||||||||||||| | ||||| ||| || |||||||||||||    
T  25750610 tttaaaactcggtatccgatccaagaatcgactaatctgaagggaccaatctca 25750663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 258
Target Start/End: Complemental strand, 22392881 - 22392797
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaa 258  Q
    |||||||||||||||||  | ||||| ||| ||||||||||||  || |||||| |||| || |||| |||| ||||||||||||    
T  22392881 ctcggtatccgatccaaaaatcgactaatctgaggggaccaattccaccgcccacttgcgggggccccgtttaaagccagagcaa 22392797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 235
Target Start/End: Original strand, 38630983 - 38631043
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgcgg 235  Q
    |||||||||||||||||| | ||| | ||| ||||||||||||| || |||||| ||||||    
T  38630983 ctcggtatccgatccaagaatcgattaatccgaggggaccaatcccaccgcccacttgcgg 38631043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 175 - 287
Target Start/End: Original strand, 23330743 - 23330856
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgcggagc-cctgttttaagccagagcaaagctttgtatggact 273  Q
    |||||||||||||||||| |  |||| ||  |||||||||||||| | |||||| ||||||||  || ||||||||||||||||||||| ||||||||||    
T  23330743 ctcggtatccgatccaaggattgactaatttgaggggaccaatcttaccgcccacttgcggaggtcccgttttaagccagagcaaagctctgtatggact 23330842  T
Q  274 tgcccaccgaaatt 287  Q
    ||||||||||||||    
T  23330843 tgcccaccgaaatt 23330856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 175 - 287
Target Start/End: Original strand, 654709 - 654821
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgcggagccctgttttaagccagagcaaagctttgtatggactt 274  Q
    |||||||||||||||||| ||||||| ||| ||||||||||||| || |||||| |||||| | || |||| |||||||||| ||||| |||||||||||    
T  654709 ctcggtatccgatccaagaaccgactaatccgaggggaccaatcccaccgcccacttgcgggggcccgtttaaagccagagc-aagctctgtatggactt 654807  T
Q  275 -gcccaccgaaatt 287  Q
     |||||||||||||    
T  654808 agcccaccgaaatt 654821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 175 - 287
Target Start/End: Complemental strand, 2751468 - 2751355
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgtatggact 273  Q
    |||||||||||||||||| | ||||| ||| ||||||||||||| || ||||||||||| || |||| |||| |||||||||| ||||| ||||||||||    
T  2751468 ctcggtatccgatccaagaatcgactaatccgaggggaccaatcccaccgcccatttgcgggggccccgtttaaagccagagc-aagctctgtatggact 2751370  T
Q  274 t-gcccaccgaaatt 287  Q
    | |||||||||||||    
T  2751369 tagcccaccgaaatt 2751355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 175 - 287
Target Start/End: Complemental strand, 7275474 - 7275361
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgtatggact 273  Q
    |||||||||||||||||| | ||||| ||| ||||||||||||| || |||||| |||| || ||||||||| |||||||||| ||||| ||||||||||    
T  7275474 ctcggtatccgatccaagaatcgactaatccgaggggaccaatcccaccgcccacttgcgggggccctgtttaaagccagagc-aagctctgtatggact 7275376  T
Q  274 t-gcccaccgaaatt 287  Q
    | |||||||||||||    
T  7275375 tagcccaccgaaatt 7275361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 175 - 284
Target Start/End: Original strand, 21574106 - 21574216
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttg-cggagccctgttttaagccagagcaaagctttgtatggact 273  Q
    |||||||||||||||||| ||||||| ||| |||||||||||||||| |||| | |||  || |||| ||| |||||| | |||||||| ||||||||||    
T  21574106 ctcggtatccgatccaaggaccgactaatccgaggggaccaatctcaccgcctacttgtgggggccccgttctaagcctgggcaaagctctgtatggact 21574205  T
Q  274 tgcccaccgaa 284  Q
    |||||||||||    
T  21574206 tgcccaccgaa 21574216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 176 - 287
Target Start/End: Original strand, 1766149 - 1766260
Alignment:
Q  176 tcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgcggagccctgttttaagccagagcaaagctttgtatggacttg 275  Q
    |||||||||||| |||||||||||| ||| |||||||||||||  | |||||| ||| || |||| ||| |||||||  |||||| | |||||||||||     
T  1766149 tcggtatccgattcaagtaccgactaatccgaggggaccaatccaaccgcccacttgtggggccccgttctaagccaaggcaaagttctgtatggactta 1766248  T
Q  276 cccaccgaaatt 287  Q
    ||||||||||||    
T  1766249 cccaccgaaatt 1766260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 175 - 287
Target Start/End: Complemental strand, 22120085 - 22119972
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgtatggact 273  Q
    |||||||||||||||||| | ||||| ||| ||||||||||||| || |||||| |||| || |||| |||| |||||||||| ||||| ||||||||||    
T  22120085 ctcggtatccgatccaagaatcgactaatccgaggggaccaatcccaccgcccacttgcgggggccccgtttaaagccagagc-aagctctgtatggact 22119987  T
Q  274 t-gcccaccgaaatt 287  Q
    | |||||||||||||    
T  22119986 tagcccaccgaaatt 22119972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 175 - 287
Target Start/End: Complemental strand, 28090016 - 28089900
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgcggagccctgttttaagccagagcaa---agctttgtatgga 271  Q
    |||||||||||||||||| | ||||| ||| ||||||||||||||||||||||| |||||| | ||  ||| ||||||||||||     |||||||||||    
T  28090016 ctcggtatccgatccaagaatcgactaatccgaggggaccaatctcatcgcccacttgcgggggcccatttaaagccagagcaagctcactttgtatgga 28089917  T
Q  272 ctt-gcccaccgaaatt 287  Q
    ||| |||||||||||||    
T  28089916 cttagcccaccgaaatt 28089900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 175 - 287
Target Start/End: Original strand, 40542914 - 40543027
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgtatggact 273  Q
    |||||||||||||||||| | ||||| ||| ||||||||||||| || |||||| |||| || |||| |||| |||||||||| ||||| ||||||||||    
T  40542914 ctcggtatccgatccaagaatcgactaatccgaggggaccaatcccaccgcccacttgcgggggccccgtttaaagccagagc-aagctctgtatggact 40543012  T
Q  274 t-gcccaccgaaatt 287  Q
    | |||||||||||||    
T  40543013 tagcccaccgaaatt 40543027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 175 - 287
Target Start/End: Complemental strand, 31274110 - 31273998
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgcggagccctgttttaagccagagcaaagctttgtatggactt 274  Q
    ||||||||||| |||||| | ||||| ||  ||||||||||||||||  ||||| ||||||||||| |||| |||||||||| ||||| |||||||||||    
T  31274110 ctcggtatccggtccaagaatcgactaattcgaggggaccaatctcactgcccacttgcggagccccgtttaaagccagagc-aagctctgtatggactt 31274012  T
Q  275 -gcccaccgaaatt 287  Q
     |||| ||||||||    
T  31274011 agcccgccgaaatt 31273998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 179 - 287
Target Start/End: Original strand, 7175870 - 7175979
Alignment:
Q  179 gtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgtatggactt-gc 276  Q
    |||||||||||||| | ||||| ||| ||||||||||||| || |||||| |||| || | ||||||| |||||||||| ||||| ||||||||||| ||    
T  7175870 gtatccgatccaagaatcgactaatccgaggggaccaatcccaccgcccacttgcgggggtcctgtttaaagccagagc-aagctctgtatggacttagc 7175968  T
Q  277 ccaccgaaatt 287  Q
    |||||||||||    
T  7175969 ccaccgaaatt 7175979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 175 - 287
Target Start/End: Complemental strand, 21835348 - 21835235
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgtatggact 273  Q
    |||| ||||||||||||| | ||||| ||| ||||||||||||| || |||||| |||| || |||| |||| |||||||||| ||||| ||||||||||    
T  21835348 ctcgatatccgatccaagaatcgactaatccgaggggaccaatcccaccgcccacttgcgggggccccgtttaaagccagagc-aagctctgtatggact 21835250  T
Q  274 t-gcccaccgaaatt 287  Q
    | |||||||||||||    
T  21835249 tagcccaccgaaatt 21835235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 175 - 287
Target Start/End: Complemental strand, 23092293 - 23092180
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgtatggact 273  Q
    |||||||||||||||| | | ||||| ||| ||||||||||||| || || |||||||| || |||| |||| |||||||||| ||||| ||||||||||    
T  23092293 ctcggtatccgatccatgaatcgactaatccgaggggaccaatcccaccgtccatttgcgggggccccgtttaaagccagagc-aagctctgtatggact 23092195  T
Q  274 t-gcccaccgaaatt 287  Q
    | |||||||||||||    
T  23092194 tagcccaccgaaatt 23092180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 168 - 287
Target Start/End: Complemental strand, 3851961 - 3851841
Alignment:
Q  168 tttaaacctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgt 266  Q
    |||||| |||||||||||||||||| | ||||| ||| ||||||| ||||| || |||||| |||| || |||| |||| |||||||||| ||||| | |    
T  3851961 tttaaaactcggtatccgatccaagaatcgactaatccgaggggatcaatcccaccgcccacttgcgggggccccgtttaaagccagagc-aagctctat 3851863  T
Q  267 atggactt-gcccaccgaaatt 287  Q
    |||||||| |||||||||||||    
T  3851862 atggacttagcccaccgaaatt 3851841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 168 - 287
Target Start/End: Original strand, 17196947 - 17197067
Alignment:
Q  168 tttaaacctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgt 266  Q
    |||||| |||||||||||||||||| | ||||| ||  ||||||||||||| || |||||| |||| || |||| |||| |||||||||| ||||| |||    
T  17196947 tttaaaactcggtatccgatccaagaatcgactaattcgaggggaccaatcccaccgcccacttgcgggggccccgtttaaagccagagc-aagctctgt 17197045  T
Q  267 atggactt-gcccaccgaaatt 287  Q
    |||||||| || ||||||||||    
T  17197046 atggacttagctcaccgaaatt 17197067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 287
Target Start/End: Complemental strand, 22703680 - 22703570
Alignment:
Q  178 ggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgtatggactt-g 275  Q
    ||||||||||| ||| | ||||| ||| ||||||||||||| || |||||| |||| || | || |||| |||||||||| ||||||||||||||||| |    
T  22703680 ggtatccgatcaaagaatcgactaatccgaggggaccaatcccaccgcccacttgcgggggtcccgtttaaagccagagc-aagctttgtatggacttag 22703582  T
Q  276 cccaccgaaatt 287  Q
    ||||||||||||    
T  22703581 cccaccgaaatt 22703570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 287
Target Start/End: Complemental strand, 11998046 - 11997933
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgtatggact 273  Q
    |||||||||||||||||| | ||||| ||  ||||||||||||| || |||||| |||| || |||| |||| |||||||||| ||||| ||||||||||    
T  11998046 ctcggtatccgatccaagaatcgactaattcgaggggaccaatcccaccgcccacttgcgggggcccagtttaaagccagagc-aagctatgtatggact 11997948  T
Q  274 t-gcccaccgaaatt 287  Q
    | ||| |||||||||    
T  11997947 tagccaaccgaaatt 11997933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 168 - 287
Target Start/End: Complemental strand, 18044311 - 18044191
Alignment:
Q  168 tttaaacctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttg-cggagccctgttttaagccagagcaaagctttgt 266  Q
    |||||| |||||||||||||||||| | ||||| ||| ||||||||||||  || | |||| |||  || |||| |||| |||||||||| ||||| |||    
T  18044311 tttaaaactcggtatccgatccaagaatcgactaatctgaggggaccaattccaccacccacttgtgggggccccgtttaaagccagagc-aagctctgt 18044213  T
Q  267 atggactt-gcccaccgaaatt 287  Q
    |||||||| |||||||||||||    
T  18044212 atggacttagcccaccgaaatt 18044191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 287
Target Start/End: Complemental strand, 28647166 - 28647053
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgcggag-ccctgttttaagccagagcaaagctttgtatggact 273  Q
    |||| ||||||||||||| || |||| ||  ||||| ||||||| || |||||| ||| || | ||| ||| |||||||||||||| || ||||| ||||    
T  28647166 ctcgatatccgatccaaggacagactaattcgagggaaccaatcccaccgcccacttgtgggggccccgttataagccagagcaaaactctgtattgact 28647067  T
Q  274 tgcccaccgaaatt 287  Q
    ||||||||||||||    
T  28647066 tgcccaccgaaatt 28647053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 235
Target Start/End: Complemental strand, 2344496 - 2344436
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgcgg 235  Q
    |||||||||||||||||| ||||||| ||| ||||||||||||| || ||| || ||||||    
T  2344496 ctcggtatccgatccaaggaccgactaatccgaggggaccaatcccaccgctcacttgcgg 2344436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 287
Target Start/End: Original strand, 8435772 - 8435812
Alignment:
Q  247 aagccagagcaaagctttgtatggacttgcccaccgaaatt 287  Q
    |||||| | ||||||||||||||||||||||||||||||||    
T  8435772 aagccaaaacaaagctttgtatggacttgcccaccgaaatt 8435812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 235
Target Start/End: Complemental strand, 16374191 - 16374131
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgcgg 235  Q
    |||||||||||||||||| | ||||| ||| ||||||||||||| || || ||||||||||    
T  16374191 ctcggtatccgatccaagaatcgactaatccgaggggaccaatcccaccgtccatttgcgg 16374131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 271
Target Start/End: Complemental strand, 22696525 - 22696419
Alignment:
Q  168 tttaaacctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc---ggagccctgttttaagccagagcaaagcttt 264  Q
    |||||| |||||||||||||||||| ||||||| ||| ||| ||||||||| |  |||| | ||||   || |||  ||| ||||||||||||||||| |    
T  22696525 tttaaaactcggtatccgatccaaggaccgactaatccgagaggaccaatcccgccgcctacttgcgcgggggcctcgttctaagccagagcaaagctct 22696426  T
Q  265 gtatgga 271  Q
    |||||||    
T  22696425 gtatgga 22696419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 235
Target Start/End: Complemental strand, 27312349 - 27312289
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgcgg 235  Q
    |||||||||||||||||| | ||||| ||| ||||||||||||| || |||||| ||||||    
T  27312349 ctcggtatccgatccaagaatcgactaatctgaggggaccaatcccaccgcccacttgcgg 27312289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 234
Target Start/End: Original strand, 31712906 - 31712965
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgcg 234  Q
    |||||||||||||||||| | ||||| ||| ||||||||||||| || |||||| |||||    
T  31712906 ctcggtatccgatccaagaatcgactaatccgaggggaccaatcccaccgcccacttgcg 31712965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 287
Target Start/End: Complemental strand, 27009564 - 27009443
Alignment:
Q  168 tttaaacctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgccca-tttgc-ggagccctgttttaagccagagcaaagctttg 265  Q
    |||||| |||||||||| ||||||| | ||||| ||  ||||||||||||| || || ||| ||||| || |||| |||| ||| |||||| ||||| ||    
T  27009564 tttaaaactcggtatccaatccaagaatcgactaatttgaggggaccaatcccaccgtccactttgcaggggccccgtttaaagtcagagc-aagctctg 27009466  T
Q  266 tatggactt-gcccaccgaaatt 287  Q
    ||||||||| |||||||||||||    
T  27009465 tatggacttagcccaccgaaatt 27009443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 287
Target Start/End: Complemental strand, 29861867 - 29861754
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgtatggact 273  Q
    |||||||||||||| ||| | ||||| ||  ||||||| ||||| || |||||| |||| || |||| |||| |||||||||| ||| | ||||||||||    
T  29861867 ctcggtatccgatctaagaatcgactaattcgaggggatcaatcccaccgcccacttgcgggggccccgtttaaagccagagc-aagttctgtatggact 29861769  T
Q  274 t-gcccaccgaaatt 287  Q
    | |||||||||||||    
T  29861768 tagcccaccgaaatt 29861754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 247 - 287
Target Start/End: Complemental strand, 1469236 - 1469196
Alignment:
Q  247 aagccagagcaaagctttgtatggacttgcccaccgaaatt 287  Q
    |||||| || ||||||||||||||||||||||| |||||||    
T  1469236 aagccaaagtaaagctttgtatggacttgcccatcgaaatt 1469196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 258
Target Start/End: Complemental strand, 22638485 - 22638401
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgcgga-gccctgttttaagccagagcaa 258  Q
    |||||||||||||||||| | ||||| ||  |||| || ||||| || |||||| ||||||| |||| |||| ||||||||||||    
T  22638485 ctcggtatccgatccaagaatcgactaattcgaggagatcaatcccaccgcccacttgcggaggccccgtttaaagccagagcaa 22638401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 274
Target Start/End: Original strand, 43785303 - 43785402
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgcgga-gccctgttttaagccagagcaaagctttgtatggact 273  Q
    |||||||||||||||||  | ||||| |||  ||||||||||||||| || ||| ||||||| |||| |||| || ||||||  ||||| ||||||||||    
T  43785303 ctcggtatccgatccaaaaatcgactaatccaaggggaccaatctcaccgtccacttgcggaggccccgtttaaaaccagag-taagctctgtatggact 43785401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 5e-22; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 168 - 287
Target Start/End: Complemental strand, 24122223 - 24122103
Alignment:
Q  168 tttaaacctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgt 266  Q
    |||||| |||||||||||||||||| | ||||| ||| ||||||||||||| || |||||| |||| ||||||| |||| |||||||||| ||||| |||    
T  24122223 tttaaaactcggtatccgatccaagaatcgactaatccgaggggaccaatcccaccgcccacttgcgggagccccgtttaaagccagagc-aagctctgt 24122125  T
Q  267 atggactt-gcccaccgaaatt 287  Q
    |||||||| |||||||||||||    
T  24122124 atggacttagcccaccgaaatt 24122103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 184 - 287
Target Start/End: Complemental strand, 16899687 - 16899583
Alignment:
Q  184 cgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgtatggacttgcccaccg 282  Q
    ||||||||| ||||||| ||| |||||||||||||||| || ||| |||| || |||| ||| ||| |||||||||||||||||||||||| ||||||||    
T  16899687 cgatccaaggaccgactaatccgaggggaccaatctcaccgtccacttgcaggggccccgttctaaaccagagcaaagctttgtatggactggcccaccg 16899588  T
Q  283 aaatt 287  Q
    |||||    
T  16899587 aaatt 16899583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 175 - 287
Target Start/End: Original strand, 4621241 - 4621354
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgcggag-ccctgttttaagccagagcaaagctttgtatggact 273  Q
    |||||||||||||||||| | ||||| ||| ||||||||||||| || |||||| |||||| | ||| |||| |||||||||| ||||| ||||||||||    
T  4621241 ctcggtatccgatccaagaatcgactaatccgaggggaccaatcccaccgcccacttgcggggaccccgtttaaagccagagc-aagctctgtatggact 4621339  T
Q  274 t-gcccaccgaaatt 287  Q
    | |||||||||||||    
T  4621340 tagcccaccgaaatt 4621354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 175 - 287
Target Start/End: Original strand, 15059406 - 15059519
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgcggag-ccctgttttaagccagagcaaagctttgtatggact 273  Q
    |||||||||||||||||| | ||||| ||  |||||||||||||||| |||||| |||||| | ||| |||| |||||||||| ||||| ||||||||||    
T  15059406 ctcggtatccgatccaagaatcgactaattcgaggggaccaatctcaccgcccacttgcggggaccccgtttaaagccagagc-aagctctgtatggact 15059504  T
Q  274 t-gcccaccgaaatt 287  Q
    | |||||||||||||    
T  15059505 tagcccaccgaaatt 15059519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 175 - 287
Target Start/End: Complemental strand, 17935962 - 17935849
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgtatggact 273  Q
    |||||||||||||||||| | ||||| ||| ||| ||||||||| ||||||||| |||| || |||| |||| ||||||||||||| || ||||||||||    
T  17935962 ctcggtatccgatccaagaatcgactaatccgagtggaccaatcccatcgcccacttgcgggggccccgtttaaagccagagcaaa-ctctgtatggact 17935864  T
Q  274 t-gcccaccgaaatt 287  Q
    | |||||||||||||    
T  17935863 tagcccaccgaaatt 17935849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 176 - 287
Target Start/End: Complemental strand, 16539799 - 16539688
Alignment:
Q  176 tcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgcggagccctgttttaagccagagcaaagctttgtatggacttg 275  Q
    |||||||||||| |||||| ||||| ||  ||||||||||||| || | |||| || | | |||| ||| |||||||| |||||||| ||||||||||||    
T  16539799 tcggtatccgatacaagtatcgactaatttgaggggaccaatcccaccacccacttacagggccccgttctaagccagcgcaaagctctgtatggacttg 16539700  T
Q  276 cccaccgaaatt 287  Q
    |||||| |||||    
T  16539699 cccaccaaaatt 16539688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 175 - 287
Target Start/End: Complemental strand, 1379090 - 1378978
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgcggagccctgttttaagccagagcaaagctttgtatggactt 274  Q
    |||||||||||||| ||| | ||||| ||| |||||||||||||||| || ||| |||||| | || |||| |||||||||| ||| | |||||||||||    
T  1379090 ctcggtatccgatctaagaatcgactaatctgaggggaccaatctcaccgtccacttgcgggggcccgtttaaagccagagc-aagttctgtatggactt 1378992  T
Q  275 -gcccaccgaaatt 287  Q
     |||||||||||||    
T  1378991 agcccaccgaaatt 1378978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 175 - 287
Target Start/End: Complemental strand, 1486613 - 1486498
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc---ggagccctgttttaagccagagcaaagctttgtatgga 271  Q
    |||||||||||||||||| ||||||| ||| ||||||||| ||| || || ||| ||||   || |||| ||| |||| |||||||||||| ||||||||    
T  1486613 ctcggtatccgatccaaggaccgactaatcggaggggaccgatcccaccgtccacttgcgggggggccccgttctaagtcagagcaaagctctgtatgga 1486514  T
Q  272 cttgcccaccgaaatt 287  Q
    ||| |||| |||||||    
T  1486513 cttacccatcgaaatt 1486498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 176 - 287
Target Start/End: Complemental strand, 24674585 - 24674473
Alignment:
Q  176 tcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgtatggactt 274  Q
    ||||||||||||||||| | ||||| ||  ||||||||||||| || |||||| |||| || |||| |||| |||||||||| ||||| |||||||||||    
T  24674585 tcggtatccgatccaagaatcgactaatacgaggggaccaatcccaccgcccacttgcgggggccccgtttaaagccagagc-aagctctgtatggactt 24674487  T
Q  275 -gcccaccgaaatt 287  Q
     |||||||||||||    
T  24674486 agcccaccgaaatt 24674473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 175 - 287
Target Start/End: Complemental strand, 32729737 - 32729625
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgcggag-ccctgttttaagccagagcaaagctttgtatggact 273  Q
    |||||||||||||||||  ||||||| |||  |||||| ||||| || |||||| |||||| | |||  ||| |||||||||||| ||| ||||||||||    
T  32729737 ctcggtatccgatccaaagaccgactaatccaaggggatcaatcccaccgcccacttgcggggaccccatttaaagccagagcaa-gctctgtatggact 32729639  T
Q  274 tgcccaccgaaatt 287  Q
    ||||||||||||||    
T  32729638 tgcccaccgaaatt 32729625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 168 - 287
Target Start/End: Original strand, 9926143 - 9926263
Alignment:
Q  168 tttaaacctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgcggagcc-ctgttttaagccagagcaaagctttgt 266  Q
    |||||| |||||||||||||| ||| ||||||| |||  | |||| ||||| || |||||| |||||| | | | ||| |||||||||||||| ||||||    
T  9926143 tttaaaactcggtatccgatcgaaggaccgactaatctaaagggatcaatcccaccgcccagttgcgggggctccgttctaagccagagcaaaactttgt 9926242  T
Q  267 atggacttgcccaccgaaatt 287  Q
    ||||| ||||||||| |||||    
T  9926243 atggatttgcccaccaaaatt 9926263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 287
Target Start/End: Original strand, 7197251 - 7197363
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgtatggact 273  Q
    |||||||||||||||| | | ||||| ||| |||||||||||||||| |||||| |||| || |||  |||| |||||||||| ||| | ||||| ||||    
T  7197251 ctcggtatccgatccatgaatcgactaatccgaggggaccaatctcaccgcccacttgcaggggcctcgtttaaagccagagc-aaggtctgtattgact 7197349  T
Q  274 tgcccaccgaaatt 287  Q
    | ||||||||||||    
T  7197350 tacccaccgaaatt 7197363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 256
Target Start/End: Original strand, 37351457 - 37351538
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgcggagccctgttttaagccagagc 256  Q
    |||||||||||||||||| ||||||| ||| ||||||||||||| || |||||| ||| || | || |||| ||||||||||    
T  37351457 ctcggtatccgatccaaggaccgactaatccgaggggaccaatcccaccgcccacttgtgggggcccgtttaaagccagagc 37351538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 171 - 287
Target Start/End: Original strand, 1095004 - 1095120
Alignment:
Q  171 aaacctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgcggagccctgttttaagccagagc---aaagctttgta 267  Q
    |||| ||| ||||||||| ||| ||||||| ||| ||||| ||||||| ||   |||| |||||| |||| ||| |||||||||||   |||||| ||||    
T  1095004 aaacttcgatatccgatctaaggaccgactaatccgagggaaccaatccca---cccacttgcggggccccgttctaagccagagctgcaaagctctgta 1095100  T
Q  268 tggacttgcccaccgaaatt 287  Q
    || |||||||||||||||||    
T  1095101 tgtacttgcccaccgaaatt 1095120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 206 - 287
Target Start/End: Complemental strand, 8077809 - 8077727
Alignment:
Q  206 gaggggaccaatctcatcgcccatttgcggag-ccctgttttaagccagagcaaagctttgtatggactt-gcccaccgaaatt 287  Q
    ||||||||||||| || |||||| |||||| | |||||||| |||||||||| ||||| ||||||||||| |||||||||||||    
T  8077809 gaggggaccaatcccaccgcccacttgcgggggccctgtttaaagccagagc-aagctctgtatggacttagcccaccgaaatt 8077727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 287
Target Start/End: Complemental strand, 1138709 - 1138659
Alignment:
Q  237 gccctgttttaagccagagcaaagctttgtatggacttgcccaccgaaatt 287  Q
    |||||||| |||| |||||||||||| |||||||||||| |||||||||||    
T  1138709 gccctgttctaagtcagagcaaagctctgtatggacttgtccaccgaaatt 1138659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 218
Target Start/End: Complemental strand, 5315531 - 5315481
Alignment:
Q  168 tttaaacctcggtatccgatccaagtaccgacttatcagaggggaccaatc 218  Q
    |||||| |||||||||||||||||| | ||||||||| |||||||||||||    
T  5315531 tttaaaactcggtatccgatccaagaatcgacttatccgaggggaccaatc 5315481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 287
Target Start/End: Original strand, 7766731 - 7766844
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgtatggact 273  Q
    |||| |||||||| |||| | ||||| ||| ||||||||||||| || |||||| |||| || |||| |||| ||| |||||| ||||| ||||||||||    
T  7766731 ctcgatatccgattcaagaatcgactaatccgaggggaccaatcccaccgcccacttgcgggggccccgtttaaagtcagagc-aagctctgtatggact 7766829  T
Q  274 t-gcccaccgaaatt 287  Q
    | |||||||||||||    
T  7766830 tagcccaccgaaatt 7766844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 287
Target Start/End: Complemental strand, 809342 - 809302
Alignment:
Q  247 aagccagagcaaagctttgtatggacttgcccaccgaaatt 287  Q
    |||||||| ||| ||||||||||||||||||||||||||||    
T  809342 aagccagatcaaggctttgtatggacttgcccaccgaaatt 809302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 287
Target Start/End: Original strand, 19034467 - 19034503
Alignment:
Q  251 cagagcaaagctttgtatggacttgcccaccgaaatt 287  Q
    |||||||||||| ||||||||||||||||||||||||    
T  19034467 cagagcaaagctctgtatggacttgcccaccgaaatt 19034503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 168 - 235
Target Start/End: Complemental strand, 35138188 - 35138121
Alignment:
Q  168 tttaaacctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgcgg 235  Q
    |||||| |||||||||||||||||| ||||||| ||| ||||| | ||||| || |||||| ||||||    
T  35138188 tttaaaactcggtatccgatccaaggaccgactaatccgagggaatcaatcccaccgcccacttgcgg 35138121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 287
Target Start/End: Complemental strand, 7578602 - 7578489
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgcg-gagccctgttttaagccagagcaaagctttgtatggact 273  Q
    |||||||||||||||||  | | ||| ||| ||||| ||||||| || | |||| ||||| | |||| |||| ||| |||||||| ||||||||||||||    
T  7578602 ctcggtatccgatccaaaaatcaactaatccgagggaaccaatcccaccacccacttgcgagggccccgtttaaagtcagagcaa-gctttgtatggact 7578504  T
Q  274 t-gcccaccgaaatt 287  Q
    | |||||||||||||    
T  7578503 tagcccaccgaaatt 7578489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 287
Target Start/End: Original strand, 9500359 - 9500472
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttg-cggagccctgttttaagccagagcaaagctttgtatggact 273  Q
    |||| ||||||||||||| | ||||| ||| || | ||||||||||| |||||| |||  || || | |||| |||||||||| ||||| ||||||||||    
T  9500359 ctcgatatccgatccaagaatcgactaatccgaagagaccaatctcaccgcccacttgtgggggctccgtttaaagccagagc-aagctctgtatggact 9500457  T
Q  274 t-gcccaccgaaatt 287  Q
    | |||||||||||||    
T  9500458 tagcccaccgaaatt 9500472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 287
Target Start/End: Complemental strand, 30677369 - 30677256
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgtatggact 273  Q
    |||| |||||| |||||| ||||||| ||| ||||||||||||| || |||||| |||| || | ||  ||| |||||| ||| ||||| ||||||||||    
T  30677369 ctcgatatccggtccaagaaccgactaatctgaggggaccaatcccaccgcccacttgcgggggtcccatttaaagccaaagc-aagctctgtatggact 30677271  T
Q  274 t-gcccaccgaaatt 287  Q
    | |||||||||||||    
T  30677270 tagcccaccgaaatt 30677256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 287
Target Start/End: Complemental strand, 18647045 - 18646933
Alignment:
Q  176 tcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgtatggactt 274  Q
    |||||||||||| |||| | ||||| ||  ||||||| |||||||| |||||| || | || || | |||| ||||||||||||| |||||||| |||||    
T  18647045 tcggtatccgattcaagaatcgactaattcgaggggatcaatctcaccgcccacttacaggggctccgtttaaagccagagcaaa-ctttgtatagactt 18646947  T
Q  275 -gcccaccgaaatt 287  Q
     |||||||||||||    
T  18646946 agcccaccgaaatt 18646933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 287
Target Start/End: Complemental strand, 23734307 - 23734196
Alignment:
Q  178 ggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc--ggagccctgttttaagccagagcaaagctttgtatggactt- 274  Q
    |||||||||| |||| | ||||| ||| |||||||||||| ||| |||||| ||||  || |||| |||| ||| || |||||| || |||||||||||     
T  23734307 ggtatccgattcaagaatcgactaatctgaggggaccaatttcaccgcccacttgcggggggccccgtttaaaggcatagcaaa-ctctgtatggactta 23734209  T
Q  275 gcccaccgaaatt 287  Q
    |||||||||||||    
T  23734208 gcccaccgaaatt 23734196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 287
Target Start/End: Complemental strand, 23741499 - 23741388
Alignment:
Q  178 ggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc--ggagccctgttttaagccagagcaaagctttgtatggactt- 274  Q
    |||||||||| |||| | ||||| ||| |||||||||||| ||| |||||| ||||  || |||| |||| ||| || |||||| || |||||||||||     
T  23741499 ggtatccgattcaagaatcgactaatctgaggggaccaatttcaccgcccacttgcggggggccccgtttaaaggcatagcaaa-ctctgtatggactta 23741401  T
Q  275 gcccaccgaaatt 287  Q
    |||||||||||||    
T  23741400 gcccaccgaaatt 23741388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 25237065 - 25237106
Alignment:
Q  246 taagccagagcaaagctttgtatggacttgcccaccgaaatt 287  Q
    |||| ||||||||| || ||||||||||||||||||||||||    
T  25237065 taagtcagagcaaaactctgtatggacttgcccaccgaaatt 25237106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 235
Target Start/End: Complemental strand, 22910064 - 22910004
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgcgg 235  Q
    |||||||||||||| ||||| ||||| ||| |||||||| |||| || |||||| ||||||    
T  22910064 ctcggtatccgatcgaagtatcgactaatccgaggggacaaatcccaccgcccacttgcgg 22910004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 235
Target Start/End: Complemental strand, 46608003 - 46607943
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgcgg 235  Q
    |||| ||||||||||||| ||||||| ||| ||||||| ||||| || |||||| ||||||    
T  46608003 ctcgatatccgatccaaggaccgactaatccgaggggatcaatcccaccgcccacttgcgg 46607943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0576 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 175 - 287
Target Start/End: Original strand, 5086 - 5199
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgtatggact 273  Q
    |||||||||||||||||| | ||||| ||| ||||||||||||| || ||||||||||| || |||| |||| |||||||||| ||||| ||||||||||    
T  5086 ctcggtatccgatccaagaatcgactaatccgaggggaccaatcccaccgcccatttgcgggggccccgtttaaagccagagc-aagctctgtatggact 5184  T
Q  274 t-gcccaccgaaatt 287  Q
    | |||||||||||||    
T  5185 tagcccaccgaaatt 5199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 32)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 183 - 280
Target Start/End: Complemental strand, 28909012 - 28908914
Alignment:
Q  183 ccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgcgg-agccctgttttaagccagagcaaagctttgtatggacttgcccac 280  Q
    |||||||||| ||||||| ||| ||||||| ||||| ||||||||| |||||| ||||| |||| |||||||| ||||||| |||||||||||||||||    
T  28909012 ccgatccaaggaccgactaatctgaggggatcaatcacatcgcccacttgcgggagccccgtttaaagccagaacaaagctctgtatggacttgcccac 28908914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 168 - 287
Target Start/End: Complemental strand, 18128717 - 18128597
Alignment:
Q  168 tttaaacctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgcggag-ccctgttttaagccagagcaaagctttgt 266  Q
    |||||| |||||||| ||||||||| ||||||| ||| ||| ||||||||| || |||||| |||||| | ||| |||| |||||||||||||||| | |    
T  18128717 tttaaaactcggtattcgatccaagaaccgactaatctgagaggaccaatcccaccgcccacttgcgggggccccgtttaaagccagagcaaagctcttt 18128618  T
Q  267 atggacttgcccaccgaaatt 287  Q
    ||||| | |||||||||||||    
T  18128617 atggattcgcccaccgaaatt 18128597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 175 - 287
Target Start/End: Original strand, 3734627 - 3734740
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgtatggact 273  Q
    |||||||||||||||||| | ||||| ||| ||||||||||||| ||  |||||||||| || |||| |||| |||||||||| ||||| ||||||||||    
T  3734627 ctcggtatccgatccaagaatcgactaatccgaggggaccaatcccactgcccatttgcgggggccccgtttaaagccagagc-aagctctgtatggact 3734725  T
Q  274 t-gcccaccgaaatt 287  Q
    | |||||||||||||    
T  3734726 tagcccaccgaaatt 3734740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 175 - 287
Target Start/End: Complemental strand, 4718842 - 4718729
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgtatggact 273  Q
    |||||||||||||||||| | ||||| ||| ||||||||||||| || |||||| |||| || |||| |||| |||||||||| ||||| ||||||||||    
T  4718842 ctcggtatccgatccaagaatcgactaatccgaggggaccaatcccaccgcccacttgcgggggccccgtttaaagccagagc-aagctctgtatggact 4718744  T
Q  274 t-gcccaccgaaatt 287  Q
    | |||||||||||||    
T  4718743 tagcccaccgaaatt 4718729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 175 - 287
Target Start/End: Original strand, 8765530 - 8765643
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgtatggact 273  Q
    |||||||||||||||||| | ||||| ||| ||||||||||||| || |||||| |||| ||||||| |||| |||||||||| ||||| ||||||||||    
T  8765530 ctcggtatccgatccaagaatcgactaatccgaggggaccaatcccaccgcccacttgcgggagccccgtttaaagccagagc-aagctctgtatggact 8765628  T
Q  274 t-gcccaccgaaatt 287  Q
    | ||||| |||||||    
T  8765629 tagcccatcgaaatt 8765643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 168 - 287
Target Start/End: Complemental strand, 21603434 - 21603314
Alignment:
Q  168 tttaaacctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgt 266  Q
    |||||| |||||||||||||||||| | ||||| ||| ||||||||||||| || |||||| |||| || |||| |||| |||||||||| ||||| |||    
T  21603434 tttaaaactcggtatccgatccaagaatcgactaatccgaggggaccaatcccaccgcccacttgcgggggccccgtttaaagccagagc-aagctctgt 21603336  T
Q  267 atggactt-gcccaccgaaatt 287  Q
    |||| ||| |||||||||||||    
T  21603335 atgggcttagcccaccgaaatt 21603314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 175 - 274
Target Start/End: Complemental strand, 19471807 - 19471707
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc--ggagccctgttttaagccagagcaaagctttgtatggac 272  Q
    |||||||||||||||||||| ||||| ||  ||||||||||||| ||||||||| ||||  || |||| |||| |||||||||| ||||| |||||||||    
T  19471807 ctcggtatccgatccaagtatcgactaattcgaggggaccaatcccatcgcccacttgcggggggccccgtttaaagccagagc-aagctctgtatggac 19471709  T
Q  273 tt 274  Q
    ||    
T  19471708 tt 19471707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 175 - 274
Target Start/End: Complemental strand, 19542731 - 19542631
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc--ggagccctgttttaagccagagcaaagctttgtatggac 272  Q
    |||||||||||||||||||| ||||| ||  ||||||||||||| ||||||||| ||||  || |||| |||| |||||||||| ||||| |||||||||    
T  19542731 ctcggtatccgatccaagtatcgactaattcgaggggaccaatcccatcgcccacttgcggggggccccgtttaaagccagagc-aagctctgtatggac 19542633  T
Q  273 tt 274  Q
    ||    
T  19542632 tt 19542631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 175 - 274
Target Start/End: Original strand, 19589965 - 19590065
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc--ggagccctgttttaagccagagcaaagctttgtatggac 272  Q
    |||||||||||||||||||| ||||| ||  ||||||||||||| ||||||||| ||||  || |||| |||| |||||||||| ||||| |||||||||    
T  19589965 ctcggtatccgatccaagtatcgactaattcgaggggaccaatcccatcgcccacttgcggggggccccgtttaaagccagagc-aagctctgtatggac 19590063  T
Q  273 tt 274  Q
    ||    
T  19590064 tt 19590065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 175 - 287
Target Start/End: Original strand, 34237659 - 34237772
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgtatggact 273  Q
    |||||||||||||||||| | ||||| ||| ||||||||||||| || ||| || |||| || |||| |||| |||||||||| ||||| ||||||||||    
T  34237659 ctcggtatccgatccaagaatcgactaatccgaggggaccaatcccaccgctcacttgcgggggccccgtttaaagccagagc-aagctctgtatggact 34237757  T
Q  274 t-gcccaccgaaatt 287  Q
    | |||||||||||||    
T  34237758 tagcccaccgaaatt 34237772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 206 - 287
Target Start/End: Complemental strand, 20505718 - 20505637
Alignment:
Q  206 gaggggaccaatctcatcgcccatttgcggagccctgttttaagccagagcaaagctttgtatggacttgcccaccgaaatt 287  Q
    ||||||||||||| || |||||| |||||| ||||| ||| |||||| | ||||||||||||||||||||||| | ||||||    
T  20505718 gaggggaccaatcccaccgcccacttgcggtgccctatttaaagccaaaacaaagctttgtatggacttgcccgctgaaatt 20505637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 176 - 287
Target Start/End: Original strand, 264405 - 264516
Alignment:
Q  176 tcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgcggagccctgttttaagccagagcaaagctttgtatggactt- 274  Q
    ||||||||||||||||| | ||||| ||  ||||||| |||||||| |||||||||| || | || |||| |||||||||| ||||| ||||| |||||     
T  264405 tcggtatccgatccaagaatcgactaattcgaggggatcaatctcaccgcccatttgtgggggcccgtttaaagccagagc-aagctatgtatagactta 264503  T
Q  275 gcccaccgaaatt 287  Q
    |||||||||||||    
T  264504 gcccaccgaaatt 264516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 176 - 287
Target Start/End: Complemental strand, 651516 - 651405
Alignment:
Q  176 tcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgcggagccctgttttaagccagagcaaagctttgtatggactt- 274  Q
    ||||||||||||||||| | ||||| ||  ||||||| |||||||| |||||||||| || | || |||| |||||||||| ||||| ||||| |||||     
T  651516 tcggtatccgatccaagaatcgactaattcgaggggatcaatctcaccgcccatttgtgggggcccgtttaaagccagagc-aagctatgtatagactta 651418  T
Q  275 gcccaccgaaatt 287  Q
    |||||||||||||    
T  651417 gcccaccgaaatt 651405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 176 - 287
Target Start/End: Complemental strand, 837251 - 837140
Alignment:
Q  176 tcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgcggagccctgttttaagccagagcaaagctttgtatggactt- 274  Q
    ||||||||||||||||| | ||||| ||  ||||||| |||||||| |||||||||| || | || |||| |||||||||| ||||| ||||| |||||     
T  837251 tcggtatccgatccaagaatcgactaattcgaggggatcaatctcaccgcccatttgtgggggcccgtttaaagccagagc-aagctatgtatagactta 837153  T
Q  275 gcccaccgaaatt 287  Q
    |||||||||||||    
T  837152 gcccaccgaaatt 837140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 178 - 287
Target Start/End: Complemental strand, 13749250 - 13749139
Alignment:
Q  178 ggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgcggag--ccctgttttaagccagagcaaagctttgtatggacttg 275  Q
    |||||| |||||||| || |||| ||| ||||||||||||  ||  ||||| |||||| |  ||| ||| |||||||||||||||||||||||| |||||    
T  13749250 ggtatctgatccaaggactgactaatccgaggggaccaattccactgcccacttgcggggggccccgttctaagccagagcaaagctttgtatgaacttg 13749151  T
Q  276 cccaccgaaatt 287  Q
    |||||| |||||    
T  13749150 cccaccaaaatt 13749139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 287
Target Start/End: Complemental strand, 39349450 - 39349340
Alignment:
Q  178 ggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgtatggactt-g 275  Q
    ||||||||||||||| | ||||| ||| ||||||| ||||| || |||||| |||| || |||| |||| |||||||||| ||||| ||||||||||| |    
T  39349450 ggtatccgatccaagaatcgactaatccgaggggatcaatcccaccgcccacttgcgggggccccgtttaaagccagagc-aagctctgtatggacttag 39349352  T
Q  276 cccaccgaaatt 287  Q
    ||||||||||||    
T  39349351 cccaccgaaatt 39349340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 287
Target Start/End: Complemental strand, 28193671 - 28193558
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttg-cggagccctgttttaagccagagcaaagctttgtatggact 273  Q
    |||||||||||||||||| | ||||| ||| ||||||||||||| || |||||| |||  || |||| |||| |||||||||| ||||| ||||||||||    
T  28193671 ctcggtatccgatccaagaatcgactaatccgaggggaccaatcccaccgcccacttgtaggggccccgtttaaagccagagc-aagctctgtatggact 28193573  T
Q  274 t-gcccaccgaaatt 287  Q
    |  ||||||||||||    
T  28193572 taacccaccgaaatt 28193558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 287
Target Start/End: Complemental strand, 42328201 - 42328088
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttg-cggagccctgttttaagccagagcaaagctttgtatggact 273  Q
    |||||||||||||||||| | ||||| ||  ||||||||||||| ||||| ||| |||  || |||| |||| |||||||||| ||||| ||||||||||    
T  42328201 ctcggtatccgatccaagaatcgactaattcgaggggaccaatcccatcgtccacttgtgggggccccgtttaaagccagagc-aagctctgtatggact 42328103  T
Q  274 t-gcccaccgaaatt 287  Q
    | |||||||||||||    
T  42328102 tagcccaccgaaatt 42328088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 259
Target Start/End: Original strand, 2639415 - 2639500
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaa 259  Q
    |||||||||||||||||| | ||||| ||| ||||||||||||| || |||||| |||| || |||| |||| |||||||||||||    
T  2639415 ctcggtatccgatccaagaatcgactaatccgaggggaccaatcccaccgcccacttgcgggggccccgtttaaagccagagcaaa 2639500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 168 - 287
Target Start/End: Original strand, 6953005 - 6953124
Alignment:
Q  168 tttaaacctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgcggag-ccctgttttaagccagagcaaagctttgt 266  Q
    |||||| |||||||| ||||||||| | ||||| ||| ||||| ||||||| || |||| | |||||| | |||||||| |||||||||| ||||| |||    
T  6953005 tttaaaactcggtattcgatccaagaatcgactaatccgaggg-accaatcccaccgccaacttgcgggggccctgtttaaagccagagc-aagctctgt 6953102  T
Q  267 atggactt-gcccaccgaaatt 287  Q
    |||||||| |||||||||||||    
T  6953103 atggacttagcccaccgaaatt 6953124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 170 - 287
Target Start/End: Original strand, 42643117 - 42643235
Alignment:
Q  170 taaacctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgcggag-ccctgttttaagccagagcaaagctttgtat 268  Q
    |||| |||||||||||||||||| | | ||| ||  ||||||||||||| || |||||| |||||| | ||| |||| ||| |||||| ||||| |||||    
T  42643117 taaaactcggtatccgatccaagaatcaactaatgcgaggggaccaatcccaccgcccacttgcggggcccccgtttcaagacagagc-aagctctgtat 42643215  T
Q  269 ggactt-gcccaccgaaatt 287  Q
    |||||| |||||||||||||    
T  42643216 ggacttagcccaccgaaatt 42643235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 287
Target Start/End: Complemental strand, 2618383 - 2618270
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgtatggact 273  Q
    ||||| |||||||||||| | ||||| ||| ||||||||||||| || |||||| |||| || || | |||| |||||||||| ||||| ||||||||||    
T  2618383 ctcggaatccgatccaagaatcgactaatccgaggggaccaatcccaccgcccacttgcgggggctccgtttaaagccagagc-aagctctgtatggact 2618285  T
Q  274 t-gcccaccgaaatt 287  Q
    | |||||| ||||||    
T  2618284 tagcccactgaaatt 2618270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 287
Target Start/End: Original strand, 15259410 - 15259523
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgtatggact 273  Q
    ||||| |||||||||||| | ||||| ||  ||||||||||||  || |||||| |||| || |||| |||| |||||||||| ||||| ||||||||||    
T  15259410 ctcggcatccgatccaagaatcgactaattcgaggggaccaattacaccgcccacttgcgggggccccgtttaaagccagagc-aagctctgtatggact 15259508  T
Q  274 t-gcccaccgaaatt 287  Q
    | |||||||||||||    
T  15259509 tagcccaccgaaatt 15259523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 287
Target Start/End: Complemental strand, 20306105 - 20305992
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgtatggact 273  Q
    |||||||||||||||||| | ||||| ||  ||||||||||||| || |||||| |||| || | || |||| |||||||||| ||||| ||||||||||    
T  20306105 ctcggtatccgatccaaggatcgactaattcgaggggaccaatcccaccgcccacttgcgggggtcccgtttaaagccagagc-aagctctgtatggact 20306007  T
Q  274 t-gcccaccgaaatt 287  Q
    | ||||| |||||||    
T  20306006 tagcccatcgaaatt 20305992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 287
Target Start/End: Complemental strand, 21092738 - 21092625
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgtatggact 273  Q
    |||||||||||||||||| | ||||| ||  ||||||||||||| || |||||| |||| || | || |||| |||||||||| ||||| ||||||||||    
T  21092738 ctcggtatccgatccaaggatcgactaattcgaggggaccaatcccaccgcccacttgcgggggtcccgtttaaagccagagc-aagctctgtatggact 21092640  T
Q  274 t-gcccaccgaaatt 287  Q
    | ||||| |||||||    
T  21092639 tagcccatcgaaatt 21092625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 287
Target Start/End: Original strand, 34639246 - 34639324
Alignment:
Q  209 gggaccaatctcatcgcccatttgcggagccctgttttaagccagagcaaagctttgtatggacttgcccaccgaaatt 287  Q
    ||||||||||  | || ||| |||| ||| || ||| ||||||||||||||||| ||||||||||| ||||||||||||    
T  34639246 gggaccaatcctaccgtccacttgcagaggcccgttctaagccagagcaaagctctgtatggacttacccaccgaaatt 34639324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 274
Target Start/End: Complemental strand, 2166900 - 2166795
Alignment:
Q  168 tttaaacctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgcggagccctgttttaagccagagcaaagctttgta 267  Q
    |||||| |||||||||| ||| ||  | ||||| ||| ||||||||||||| || |||||| |||||| | | | ||| |||||||||| ||||| ||||    
T  2166900 tttaaaactcggtatccaatcaaaaaatcgactaatctgaggggaccaatcccaccgcccacttgcggggtcttatttaaagccagagc-aagctctgta 2166802  T
Q  268 tggactt 274  Q
    |||||||    
T  2166801 tggactt 2166795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 287
Target Start/End: Original strand, 3403537 - 3403619
Alignment:
Q  206 gaggggaccaatctcatcgcccatttgcg-gagccctgttttaagccagagcaaagctttgtatggacttgcccaccgaaatt 287  Q
    ||||||||||| |||| |||||| || || | ||||  ||| |||||| | ||||| ||||||||||||||||||||||||||    
T  3403537 gaggggaccaacctcaccgcccacttacgagggccccatttaaagccaaaacaaagttttgtatggacttgcccaccgaaatt 3403619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 34694652 - 34694693
Alignment:
Q  246 taagccagagcaaagctttgtatggacttgcccaccgaaatt 287  Q
    |||||| ||||||||||||||||| | |||||||||||||||    
T  34694652 taagccggagcaaagctttgtatgaatttgcccaccgaaatt 34694693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 287
Target Start/End: Complemental strand, 41070886 - 41070845
Alignment:
Q  246 taagccagagcaaagctttgtatggacttgcccaccgaaatt 287  Q
    |||||||||| |||||| |||||| |||||||||||||||||    
T  41070886 taagccagagtaaagctatgtatgaacttgcccaccgaaatt 41070845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 219
Target Start/End: Original strand, 5740387 - 5740431
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatct 219  Q
    |||||| ||||||||||| ||||||| ||| ||||||||||||||    
T  5740387 ctcggtgtccgatccaaggaccgactaatccgaggggaccaatct 5740431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 287
Target Start/End: Complemental strand, 24018580 - 24018466
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgccca--tttgcggagccctgttttaagccagagcaaagctttgtatggac 272  Q
    |||| |||||| |||||| ||||||| ||   ||||||||||||||| ||||||  | || |||| || |||| |||||||||| ||||| |||||||||    
T  24018580 ctcgatatccggtccaagaaccgactaattcaaggggaccaatctcaccgcccacttgtggggaggcccgtttaaagccagagc-aagctctgtatggac 24018482  T
Q  273 tt-gcccaccgaaatt 287  Q
    || |||||| ||||||    
T  24018481 ttagcccactgaaatt 24018466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 175 - 287
Target Start/End: Original strand, 15360102 - 15360215
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgtatggact 273  Q
    |||||||||||||||||| | ||||| ||| ||||||||||||| || ||||||||||| || |||| |||| |||||||||| ||||| ||||||||||    
T  15360102 ctcggtatccgatccaagaatcgactaatccgaggggaccaatcccaccgcccatttgcgggggccccgtttaaagccagagc-aagctctgtatggact 15360200  T
Q  274 t-gcccaccgaaatt 287  Q
    | |||||||||||||    
T  15360201 tagcccaccgaaatt 15360215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 175 - 287
Target Start/End: Original strand, 3222640 - 3222752
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgcggagccctgttttaagccagagcaaagctttgtatggactt 274  Q
    |||||||||||||||||| | ||||| ||| ||||||||||||| || |||||| |||||| |||| |||| ||| |||||| ||||| |||||||||||    
T  3222640 ctcggtatccgatccaagaatcgactaatccgaggggaccaatcccaccgcccacttgcggggccccgtttaaagacagagc-aagctctgtatggactt 3222738  T
Q  275 -gcccaccgaaatt 287  Q
     |||||||||||||    
T  3222739 agcccaccgaaatt 3222752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 175 - 287
Target Start/End: Complemental strand, 17225859 - 17225747
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgcggagccctgttttaagccagagcaaagctttgtatggactt 274  Q
    |||| ||||||||| ||| ||||||| ||| |||| || ||||| || ||||||||||||| |||| ||| ||| | ||||||||||| |||||||||||    
T  17225859 ctcgatatccgatctaaggaccgactaatctgaggagatcaatcccaccgcccatttgcggggccccgttctaaacgagagcaaagctctgtatggactt 17225760  T
Q  275 gcccaccgaaatt 287  Q
    |||| ||||||||    
T  17225759 gcccgccgaaatt 17225747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 175 - 287
Target Start/End: Complemental strand, 10377909 - 10377795
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgcggag--ccctgttttaagccagagcaaagctttgtatggac 272  Q
    |||||||||| ||||||| |||||||  || ||||||||||||  || |||||| ||| || |  ||| |||||||| |||||||||||| |||||||||    
T  10377909 ctcggtatccaatccaaggaccgactactccgaggggaccaatgccaccgcccacttgtggggggccccgttttaagtcagagcaaagctatgtatggac 10377810  T
Q  273 ttgcccaccgaaatt 287  Q
    |||||||||||||||    
T  10377809 ttgcccaccgaaatt 10377795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 175 - 287
Target Start/End: Original strand, 654150 - 654263
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgtatggact 273  Q
    |||||||||||||||||  | ||||| ||| ||||||||||||| || |||||| |||| ||||||| |||| |||||||||| ||||| ||||||||||    
T  654150 ctcggtatccgatccaataatcgactaatccgaggggaccaatcccaccgcccacttgcgggagccccgtttaaagccagagc-aagctctgtatggact 654248  T
Q  274 t-gcccaccgaaatt 287  Q
    | |||||||||||||    
T  654249 tagcccaccgaaatt 654263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 175 - 287
Target Start/End: Complemental strand, 34147539 - 34147426
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgtatggact 273  Q
    |||||||||||||||||| | ||||| ||| ||||||||||||| || |||||| |||| || | || |||| |||||||||| ||||| ||||||||||    
T  34147539 ctcggtatccgatccaagaatcgactaatccgaggggaccaatcccaccgcccacttgcggggggcccgtttaaagccagagc-aagctctgtatggact 34147441  T
Q  274 t-gcccaccgaaatt 287  Q
    | |||||||||||||    
T  34147440 tagcccaccgaaatt 34147426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 175 - 287
Target Start/End: Complemental strand, 34160155 - 34160042
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgtatggact 273  Q
    |||||||||||||||||| | ||||| ||| ||||||||||||| || |||||| |||| || | || |||| |||||||||| ||||| ||||||||||    
T  34160155 ctcggtatccgatccaagaatcgactaatccgaggggaccaatcccaccgcccacttgcggggggcccgtttaaagccagagc-aagctctgtatggact 34160057  T
Q  274 t-gcccaccgaaatt 287  Q
    | |||||||||||||    
T  34160056 tagcccaccgaaatt 34160042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 175 - 287
Target Start/End: Original strand, 21148515 - 21148627
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgcggagccctgttttaagccagagcaaagctttgtatggactt 274  Q
    ||||||||||||| |||| | ||||| ||| ||||||||||||| || |||||| |||||| |||| |||| ||| |||||| ||||| |||||||||||    
T  21148515 ctcggtatccgattcaagaatcgactaatccgaggggaccaatcccaccgcccacttgcggggccccgtttaaagtcagagc-aagctctgtatggactt 21148613  T
Q  275 -gcccaccgaaatt 287  Q
     ||||| |||||||    
T  21148614 agcccatcgaaatt 21148627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 287
Target Start/End: Complemental strand, 11449064 - 11448951
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgtatggact 273  Q
    |||| |||||||| |||| | ||||| ||| ||||||||||||| || |||||| |||| || |||| |||| |||||||||| ||||| ||||||||||    
T  11449064 ctcgatatccgattcaagaatcgactaatccgaggggaccaatcccaccgcccacttgcgggggccccgtttaaagccagagc-aagctctgtatggact 11448966  T
Q  274 t-gcccaccgaaatt 287  Q
    | |||||||||||||    
T  11448965 tagcccaccgaaatt 11448951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 168 - 287
Target Start/End: Original strand, 9690635 - 9690755
Alignment:
Q  168 tttaaacctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgcg-gagccctgttttaagccagagcaaagctttgt 266  Q
    |||||| |||||||||||||||||| | ||||| ||| ||| ||||||||| || || ||| ||| | | |||| |||| |||||||||| ||||| |||    
T  9690635 tttaaaactcggtatccgatccaagaatcgactaatccgagaggaccaatcccaccgtccacttgtgagggccccgtttaaagccagagc-aagctctgt 9690733  T
Q  267 atggactt-gcccaccgaaatt 287  Q
    |||||||| |||||||||||||    
T  9690734 atggacttagcccaccgaaatt 9690755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 287
Target Start/End: Complemental strand, 12390597 - 12390505
Alignment:
Q  196 cgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgtatggactt-gcccaccgaaatt 287  Q
    ||||| ||| ||||||||||||| || |||||| |||| || ||||||||| |||||||||| ||||| ||||||||||| |||||||||||||    
T  12390597 cgactaatccgaggggaccaatcccaccgcccacttgcgggggccctgtttaaagccagagc-aagctctgtatggacttagcccaccgaaatt 12390505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 168 - 287
Target Start/End: Complemental strand, 9208452 - 9208332
Alignment:
Q  168 tttaaacctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgcggag-ccctgttttaagccagagcaaagctttgt 266  Q
    |||||| ||||||||  |||||||| | |||||  || |||| |||||||| || |||||| |||||| | |||  ||| |||||| ||||| ||| |||    
T  9208452 tttaaaactcggtatttgatccaagaatcgactattctgaggagaccaatcccaccgcccacttgcgggggccccatttaaagccaaagcaaggctctgt 9208353  T
Q  267 atggacttgcccaccgaaatt 287  Q
    |||||||||||||||||||||    
T  9208352 atggacttgcccaccgaaatt 9208332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 168 - 287
Target Start/End: Complemental strand, 33499675 - 33499555
Alignment:
Q  168 tttaaacctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgcggagc-cctgttttaagccagagcaaagctttgt 266  Q
    |||||| ||||||||||| ||||   || |||| ||| ||||||||||||| || |||||| ||| ||||  ||  ||| |||||| ||||||| |||||    
T  33499675 tttaaaactcggtatccggtccatcaactgactaatccgaggggaccaatcccaccgcccacttgtggagggcccatttaaagccaaagcaaagatttgt 33499576  T
Q  267 atggacttgcccaccgaaatt 287  Q
    ||||||| |||||||||||||    
T  33499575 atggactagcccaccgaaatt 33499555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 287
Target Start/End: Complemental strand, 1345128 - 1345015
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgtatggact 273  Q
    |||||||||||||||||| | ||||| |||  |||||||||||| || || ||| |||| || | || |||| |||||||||| ||||||||||||||||    
T  1345128 ctcggtatccgatccaagaatcgactaatccaaggggaccaatcccaccgtccacttgcggggggcccgtttaaagccagagc-aagctttgtatggact 1345030  T
Q  274 t-gcccaccgaaatt 287  Q
    | |||||| ||||||    
T  1345029 tagcccactgaaatt 1345015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 278
Target Start/End: Complemental strand, 3907727 - 3907629
Alignment:
Q  180 tatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgcggagccctgttttaagccagagcaaagctttgtatggacttgccc 278  Q
    |||| |||||||| | ||||| ||| ||| ||| |||||||| || |||||||||| | || ||| ||| |||||||||||  ||||||||||||||||    
T  3907727 tatctgatccaaggaacgactaatctgagaggatcaatctcaccgtccatttgcgggggcccgttctaaaccagagcaaagtcttgtatggacttgccc 3907629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 287
Target Start/End: Original strand, 21982325 - 21982437
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgtatggact 273  Q
    |||||||||||||||||| | ||||| ||| || |||||||||| || |||||| |||| || |||| |||| |||||||||| ||||| ||||||||||    
T  21982325 ctcggtatccgatccaagaatcgactaatccga-gggaccaatcccaccgcccacttgcgggggccccgtttaaagccagagc-aagctctgtatggact 21982422  T
Q  274 t-gcccaccgaaatt 287  Q
    | |||||| ||||||    
T  21982423 tagcccactgaaatt 21982437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 235
Target Start/End: Complemental strand, 9239168 - 9239108
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgcgg 235  Q
    |||||||||||||||||| | ||||| ||| ||||||||||||| || |||||| ||||||    
T  9239168 ctcggtatccgatccaagaatcgactaatccgaggggaccaatcccaccgcccacttgcgg 9239108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 178 - 287
Target Start/End: Complemental strand, 11007355 - 11007245
Alignment:
Q  178 ggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgtatggactt-g 275  Q
    ||||||||||| ||| | ||||| ||| |||||| |||||| || |||||| |||| || |||| | || |||| ||||| ||||||||||||||||| |    
T  11007355 ggtatccgatcaaagaatcgactaatccgagggggccaatcccaccgcccacttgcgggggccccgcttaaagctagagc-aagctttgtatggacttag 11007257  T
Q  276 cccaccgaaatt 287  Q
    ||||||||||||    
T  11007256 cccaccgaaatt 11007245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 287
Target Start/End: Original strand, 17081058 - 17081171
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgtatggact 273  Q
    |||||||| ||||||||| | | ||||||  ||||||||||||| || |||||| |||| || ||||  ||| ||| |||||| ||||| ||||||||||    
T  17081058 ctcggtattcgatccaagaaacaacttattcgaggggaccaatcccaccgcccacttgcgggggccccatttaaagtcagagc-aagctctgtatggact 17081156  T
Q  274 t-gcccaccgaaatt 287  Q
    | |||||||||||||    
T  17081157 tagcccaccgaaatt 17081171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 287
Target Start/End: Original strand, 17149460 - 17149573
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgcggag-ccctgttttaagccagagcaaagctttgtatggact 273  Q
    ||||||||| ||| |||| ||||||| ||  ||||||||||||| || ||  || |||||| | |||  ||| |||||| ||||| ||| ||||||||||    
T  17149460 ctcggtatctgattcaaggaccgactaattcgaggggaccaatcccaccgttcacttgcgggggccccatttaaagccaaagcaaggctctgtatggact 17149559  T
Q  274 tgcccaccgaaatt 287  Q
    |||| |||||||||    
T  17149560 tgccaaccgaaatt 17149573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 228
Target Start/End: Complemental strand, 8479485 - 8479437
Alignment:
Q  180 tatccgatccaagtaccgacttatcagaggggaccaatctcatcgccca 228  Q
    ||||||||| ||| | ||||| ||| |||||||||||||||||||||||    
T  8479485 tatccgatctaaggaacgactaatctgaggggaccaatctcatcgccca 8479437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 274
Target Start/End: Complemental strand, 9844131 - 9844032
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttg-cggagccctgttttaagccagagcaaagctttgtatggact 273  Q
    |||| ||||||||||||| | ||||| ||| || ||||||||||||| |||||| |||  || |||| |||| |||||||| | ||||| ||||||||||    
T  9844131 ctcgatatccgatccaagaatcgactaatccgaagggaccaatctcaccgcccacttgagggggccccgtttaaagccagaac-aagctctgtatggact 9844033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 168 - 285
Target Start/End: Original strand, 29140 - 29257
Alignment:
Q  168 tttaaacctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgcggagccctgttttaagccagagcaaagctttgta 267  Q
    |||||| |||||||||||||||||| || |||| ||| ||||||||||||| ||  | |||||||||| |  |  |||||||||||||||||||| ||||    
T  29140 tttaaaactcggtatccgatccaaggactgactaatctgaggggaccaatcccactgtccatttgcgggggtccattttaagccagagcaaagctctgta 29239  T
Q  268 tggacttgcccaccgaaa 285  Q
    ||||||| || |||||||    
T  29240 tggacttaccgaccgaaa 29257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 176 - 283
Target Start/End: Original strand, 13771487 - 13771596
Alignment:
Q  176 tcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgtatggactt 274  Q
    ||||||||||||||||| ||||||| || | |||||||||||||||||  ||| |||| ||||||| |||| ||||||||||| ||||| ||||||||||    
T  13771487 tcggtatccgatccaagaaccgactaattataggggaccaatctcatcatccacttgcgggagccccgtttaaagccagagcatagcttcgtatggactt 13771586  T
Q  275 -gcccaccga 283  Q
     |||||||||    
T  13771587 agcccaccga 13771596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 186 - 287
Target Start/End: Original strand, 22630204 - 22630303
Alignment:
Q  186 atccaagtaccgacttatcagaggggaccaatctcatcgcccatttgcggagccctgttttaagccagagcaaagctttgtatggacttgcccaccgaaa 285  Q
    ||||||| ||||||| ||  |||||||||||||||| |||||||||||||||    ||| ||||||| |||||| ||||||||||||||||||||| |||    
T  22630204 atccaaggaccgactgattcgaggggaccaatctcaccgcccatttgcggag--gggttctaagccaaagcaaaactttgtatggacttgcccaccaaaa 22630301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 175 - 287
Target Start/End: Original strand, 27528799 - 27528912
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgtatggact 273  Q
    |||||||||||||||||| | ||||| ||| |||||||||||||||| |||||| |||| || |||| || | |||||||||| ||||| ||||||||||    
T  27528799 ctcggtatccgatccaagaatcgactaatccgaggggaccaatctcaccgcccacttgcgggggccccgtataaagccagagc-aagctctgtatggact 27528897  T
Q  274 t-gcccaccgaaatt 287  Q
    | |||||||||||||    
T  27528898 tagcccaccgaaatt 27528912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 175 - 287
Target Start/End: Original strand, 34844762 - 34844875
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgtatggact 273  Q
    |||||||||||||||||| | ||||| ||| ||||||||||||| || |||||| |||| || |||| |||| |||||||||| ||||| ||||||||||    
T  34844762 ctcggtatccgatccaagaatcgactaatccgaggggaccaatcccaccgcccacttgcgggggccccgtttaaagccagagc-aagctctgtatggact 34844860  T
Q  274 t-gcccaccgaaatt 287  Q
    | |||||||||||||    
T  34844861 tagcccaccgaaatt 34844875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 175 - 287
Target Start/End: Original strand, 40058856 - 40058969
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgtatggact 273  Q
    |||||||||||||||||| | ||||| ||| ||||||||||||| || |||||| |||| || |||| |||| |||||||||| ||||| ||||||||||    
T  40058856 ctcggtatccgatccaagaatcgactaatccgaggggaccaatcccaccgcccacttgcgggggccccgtttaaagccagagc-aagctctgtatggact 40058954  T
Q  274 t-gcccaccgaaatt 287  Q
    | |||||||||||||    
T  40058955 tagcccaccgaaatt 40058969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 175 - 287
Target Start/End: Original strand, 19660536 - 19660649
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgtatggact 273  Q
    |||||||||||||||||| | ||||| ||| ||||||| ||||| || |||||| |||| || ||||||||| |||||||||| ||||| ||||||||||    
T  19660536 ctcggtatccgatccaagaatcgactaatccgaggggatcaatcccaccgcccacttgcgggggccctgtttaaagccagagc-aagctctgtatggact 19660634  T
Q  274 t-gcccaccgaaatt 287  Q
    |  ||||||||||||    
T  19660635 tatcccaccgaaatt 19660649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 168 - 287
Target Start/End: Complemental strand, 25852415 - 25852294
Alignment:
Q  168 tttaaacctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgcg-gagccctgtttt-aagccagagcaaagctttg 265  Q
    |||||| ||||||||||| |||||| ||||||| ||| ||||||||||||| ||| ||||| ||||| | | || ||||| |||||||||| ||||| ||    
T  25852415 tttaaaactcggtatccggtccaagaaccgactaatccgaggggaccaatcccattgcccacttgcgagggtcccgttttaaagccagagc-aagctctg 25852317  T
Q  266 tatggactt-gcccaccgaaatt 287  Q
    ||||||||| |||||||||||||    
T  25852316 tatggacttagcccaccgaaatt 25852294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 175 - 287
Target Start/End: Complemental strand, 34723992 - 34723879
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgtatggact 273  Q
    |||||||||||||||||| | ||||| ||| ||| ||||||||| || | |||| |||| || |||| |||| |||||||||| ||||||||||||||||    
T  34723992 ctcggtatccgatccaagaatcgactaatccgagaggaccaatcccaccacccacttgcgggggccccgtttaaagccagagc-aagctttgtatggact 34723894  T
Q  274 t-gcccaccgaaatt 287  Q
    | |||||||||||||    
T  34723893 tagcccaccgaaatt 34723879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 175 - 287
Target Start/End: Complemental strand, 52983812 - 52983699
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgtatggact 273  Q
    |||||||||||||||||| | ||||| ||| ||||||||||||| || |||||| |||| || |||| |||| |||||||||| ||||| ||||||||||    
T  52983812 ctcggtatccgatccaagaatcgactaatccgaggggaccaatcccaccgcccacttgcgggggccccgtttaaagccagagc-aagctctgtatggact 52983714  T
Q  274 t-gcccaccgaaatt 287  Q
    | |||||| ||||||    
T  52983713 tagcccactgaaatt 52983699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 168 - 287
Target Start/End: Complemental strand, 20566550 - 20566430
Alignment:
Q  168 tttaaacctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgt 266  Q
    |||||| |||| ||||||||||||| | ||||| ||| ||||||||||||| || |||||| |||| || || | |||| |||||||||| ||||| |||    
T  20566550 tttaaaactcgatatccgatccaagaatcgactaatctgaggggaccaatcccagcgcccacttgcgggggctccgtttaaagccagagc-aagctctgt 20566452  T
Q  267 atggac-ttgcccaccgaaatt 287  Q
    |||||| |||||||||||||||    
T  20566451 atggactttgcccaccgaaatt 20566430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 175 - 287
Target Start/End: Complemental strand, 28791307 - 28791195
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgcggagccctgttttaagccagagcaaagctttgtatggactt 274  Q
    |||| |||||||| |||| ||||||| ||  ||  | |||||||||| |||||| ||| |||| || |||| |||||||||||||| ||||||| |||||    
T  28791307 ctcgatatccgattcaaggaccgactaattcgaaagaaccaatctcaccgcccacttgtggagacccgtttaaagccagagcaaagttttgtatagactt 28791208  T
Q  275 gcccaccgaaatt 287  Q
     ||||||||||||    
T  28791207 acccaccgaaatt 28791195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 287
Target Start/End: Original strand, 45787708 - 45787821
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgtatggact 273  Q
    |||||||||||||||||| | ||||| ||  ||||||||||||| || || ||| |||| || ||||||||| |||||||||| ||||| ||||||||||    
T  45787708 ctcggtatccgatccaagaatcgactaattcgaggggaccaatcccaccgtccacttgcgggggccctgtttaaagccagagc-aagctctgtatggact 45787806  T
Q  274 t-gcccaccgaaatt 287  Q
    | |||||| ||||||    
T  45787807 tagcccactgaaatt 45787821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 179 - 287
Target Start/End: Complemental strand, 49288046 - 49287938
Alignment:
Q  179 gtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgtatggactt-gc 276  Q
    ||||| |||||||| | ||||| ||| |||||||||||||||| |||||| |||| ||||||| |||| |||||| ||||||  ||||||||||||| ||    
T  49288046 gtatctgatccaagaatcgactaatccgaggggaccaatctcagcgcccacttgcgggagccc-gtttaaagccatagcaaa-ttttgtatggacttagc 49287949  T
Q  277 ccaccgaaatt 287  Q
    |||||||||||    
T  49287948 ccaccgaaatt 49287938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 179 - 287
Target Start/End: Original strand, 54127350 - 54127459
Alignment:
Q  179 gtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgtatggactt-gc 276  Q
    ||||||| |||||| ||||||| ||| ||||||||||||| || |||||| |||| || |||| |||| |||||||||| ||||| ||||| ||||| ||    
T  54127350 gtatccggtccaagaaccgactaatccgaggggaccaatcccaccgcccacttgcgggggccccgtttaaagccagagc-aagctctgtatagacttagc 54127448  T
Q  277 ccaccgaaatt 287  Q
    |||||||||||    
T  54127449 ccaccgaaatt 54127459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 168 - 287
Target Start/End: Original strand, 33696276 - 33696396
Alignment:
Q  168 tttaaacctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgt 266  Q
    |||||| |||| ||||||||||||| |  |||| ||| ||| |||||||||||| |||||| |||| || ||||  ||| |||||||||| ||||| |||    
T  33696276 tttaaaactcgatatccgatccaagaattgactaatccgagaggaccaatctcaccgcccacttgcgggggccccatttaaagccagagc-aagctctgt 33696374  T
Q  267 atggactt-gcccaccgaaatt 287  Q
    |||||||| |||||||||||||    
T  33696375 atggacttagcccaccgaaatt 33696396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 287
Target Start/End: Original strand, 5609206 - 5609319
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgtatggact 273  Q
    |||||||||||||||||| | ||||| ||| ||||||| ||||| || || ||| |||| || ||||  ||| |||||||||| ||||| ||||||||||    
T  5609206 ctcggtatccgatccaagaatcgactaatccgaggggatcaatcccaccgtccacttgcgggggccccatttaaagccagagc-aagctctgtatggact 5609304  T
Q  274 t-gcccaccgaaatt 287  Q
    | |||||||||||||    
T  5609305 tagcccaccgaaatt 5609319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 287
Target Start/End: Original strand, 20077988 - 20078101
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgtatggact 273  Q
    |||||||||||||||||| | ||||| ||| ||||| || |||| || |||||| || | || |||| |||| |||||||||| ||||| ||||||||||    
T  20077988 ctcggtatccgatccaagaatcgactaatccgagggaactaatcccaccgcccacttacgggggccccgtttaaagccagagc-aagctctgtatggact 20078086  T
Q  274 t-gcccaccgaaatt 287  Q
    | |||||||||||||    
T  20078087 tagcccaccgaaatt 20078101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 287
Target Start/End: Complemental strand, 32986390 - 32986277
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgtatggact 273  Q
    |||||||||||||||||| | |||||  || ||||||||||||| || |||||| |||| || ||||  ||| ||| |||||| ||||| ||||||||||    
T  32986390 ctcggtatccgatccaagaatcgactattccgaggggaccaatcccaccgcccacttgcgggggccccatttaaagtcagagc-aagctctgtatggact 32986292  T
Q  274 t-gcccaccgaaatt 287  Q
    | |||||||||||||    
T  32986291 tagcccaccgaaatt 32986277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 287
Target Start/End: Complemental strand, 32990624 - 32990515
Alignment:
Q  179 gtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgtatggactt-gc 276  Q
    |||| ||||||||| | |||||  || ||||||||||||| || |||||| |||| || |||| |||| |||||||||| ||||| ||||||||||| ||    
T  32990624 gtattcgatccaagaatcgactagtccgaggggaccaatcccaccgcccacttgcgggggccccgtttaaagccagagc-aagctctgtatggacttagc 32990526  T
Q  277 ccaccgaaatt 287  Q
    |||||||||||    
T  32990525 ccaccgaaatt 32990515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 287
Target Start/End: Complemental strand, 44343707 - 44343594
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgtatggact 273  Q
    ||||||||||||| |||| | ||||| ||  ||||||||||||| || |||||| |||| ||||||| |||| ||| |||||| ||||| ||||||||||    
T  44343707 ctcggtatccgattcaagaatcgactaattcgaggggaccaatcccaccgcccacttgcgggagccccgtttaaagtcagagc-aagctctgtatggact 44343609  T
Q  274 t-gcccaccgaaatt 287  Q
    | ||||||| |||||    
T  44343608 tagcccaccaaaatt 44343594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 168 - 268
Target Start/End: Original strand, 3391443 - 3391544
Alignment:
Q  168 tttaaacctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgcg-gagccctgttttaagccagagcaaagctttgt 266  Q
    |||||| ||||||||| ||| |||  ||||||| ||  |||||||||||||||| || | ||||||| ||  || ||||||||||||||||||||| |||    
T  3391443 tttaaaactcggtatctgattcaatgaccgactaattcgaggggaccaatctcaccgtctatttgcgagaatcccgttttaagccagagcaaagctatgt 3391542  T
Q  267 at 268  Q
    ||    
T  3391543 at 3391544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 279
Target Start/End: Original strand, 9646220 - 9646325
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgcggag-ccctgttttaagccagagcaaagctttgtatggact 273  Q
    ||||||| |||||||||  ||||||| ||| ||||||| ||||| ||  ||||| |||||| | ||| ||| ||||||||||||||||  |||||| |||    
T  9646220 ctcggtacccgatccaatgaccgactaatccgaggggatcaatcccactgcccacttgcggtggcccggttctaagccagagcaaagcactgtatgaact 9646319  T
Q  274 tgccca 279  Q
    ||||||    
T  9646320 tgccca 9646325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 287
Target Start/End: Complemental strand, 12710370 - 12710259
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgcggagccctgttttaagccagagcaaagctttgtatggactt 274  Q
    |||||||||||||||||| ||||| | ||| |||| |||||||| |  ||| || ||||  ||  | ||| ||||||||||||||||  |||||||||||    
T  12710370 ctcggtatccgatccaaggaccgattaatctgaggtgaccaatccctccgctcacttgcc-agagcagttctaagccagagcaaagcactgtatggactt 12710272  T
Q  275 gcccaccgaaatt 287  Q
    | |||||||||||    
T  12710271 gtccaccgaaatt 12710259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 287
Target Start/End: Original strand, 53787063 - 53787175
Alignment:
Q  177 cggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgtatggactt- 274  Q
    |||||| ||||||||  ||||||| ||| |||||||| |||| || ||||||||||| || || | |||| ||||||||||| ||||  | ||||||||     
T  53787063 cggtattcgatccaaaaaccgactaatctgaggggactaatcccaccgcccatttgcgggggctccgtttaaagccagagcatagctccgcatggactta 53787162  T
Q  275 gcccaccgaaatt 287  Q
    |||||||||||||    
T  53787163 gcccaccgaaatt 53787175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 178 - 287
Target Start/End: Original strand, 22488035 - 22488145
Alignment:
Q  178 ggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgtatggactt-g 275  Q
    ||||||||||||||| ||||||| ||  ||||||| ||||| || ||||||||||| || |||| |||| |||||||| | ||||| | ||||||||| |    
T  22488035 ggtatccgatccaaggaccgactaatttgaggggatcaatcccaccgcccatttgcgggggccccgtttaaagccagaac-aagctctatatggacttag 22488133  T
Q  276 cccaccgaaatt 287  Q
     |||||||||||    
T  22488134 tccaccgaaatt 22488145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 287
Target Start/End: Complemental strand, 46714586 - 46714473
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgtatggact 273  Q
    ||||||||||||| |||| |  |||| ||| ||||||||||||| || |||||| |||| || |||| |||| |||| || || ||||| ||||||||||    
T  46714586 ctcggtatccgattcaagaattgactaatccgaggggaccaatcccaccgcccacttgcgggggccccgtttaaagcaagggc-aagctctgtatggact 46714488  T
Q  274 t-gcccaccgaaatt 287  Q
    | |||||||||||||    
T  46714487 tagcccaccgaaatt 46714473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 287
Target Start/End: Original strand, 9517650 - 9517758
Alignment:
Q  180 tatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgtatggactt-gcc 277  Q
    ||||||||||||| | ||||| ||| |||||||||||||||| | ||||  ||| || |||| |||| ||| |||||| ||||| ||||||||||| |||    
T  9517650 tatccgatccaagaatcgactaatccgaggggaccaatctcaccacccacctgcgggggccccgtttaaagtcagagc-aagctctgtatggacttagcc 9517748  T
Q  278 caccgaaatt 287  Q
    ||| ||||||    
T  9517749 cactgaaatt 9517758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 287
Target Start/End: Complemental strand, 39288979 - 39288939
Alignment:
Q  246 taagccagagcaaagctttgtatggacttgcccaccgaaatt 287  Q
    ||||||||||||| ||| ||||||||||||||||||||||||    
T  39288979 taagccagagcaa-gctctgtatggacttgcccaccgaaatt 39288939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 233
Target Start/End: Complemental strand, 52494687 - 52494623
Alignment:
Q  169 ttaaacctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc 233  Q
    ||||| |||||||||||||||||| | ||||| ||  ||||||||||||| || |||||| ||||    
T  52494687 ttaaaactcggtatccgatccaagaatcgactaattcgaggggaccaatcccaccgcccacttgc 52494623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 40)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 175 - 287
Target Start/End: Original strand, 15566504 - 15566616
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgcggagccctgttttaagccagagcaaagctttgtatggactt 274  Q
    |||||||||||||||||| | ||||| ||| ||||||||||||| || |||||| |||||| | || |||| |||||||||| ||||| |||||||||||    
T  15566504 ctcggtatccgatccaagaatcgactaatctgaggggaccaatcccaccgcccacttgcgggggcccgtttaaagccagagc-aagctctgtatggactt 15566602  T
Q  275 -gcccaccgaaatt 287  Q
     |||||||||||||    
T  15566603 agcccaccgaaatt 15566616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 168 - 287
Target Start/End: Original strand, 52821633 - 52821752
Alignment:
Q  168 tttaaacctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgcggagccctgttttaagccagagcaaagctttgta 267  Q
    |||||| |||||||||||||||||| | ||||| ||| ||||||||||||| || |||||| || ||| |||| |||| |||||||||| ||||| ||||    
T  52821633 tttaaaactcggtatccgatccaagaatcgactaatccgaggggaccaatcccaccgcccacttacggggccccgtttaaagccagagc-aagctctgta 52821731  T
Q  268 tggactt-gcccaccgaaatt 287  Q
    ||||||| || ||||||||||    
T  52821732 tggacttagctcaccgaaatt 52821752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 175 - 287
Target Start/End: Complemental strand, 48977581 - 48977468
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgtatggact 273  Q
    |||||||||||||||||| ||||||| ||| ||||||||||||| || |||||| |||| || |||| |||| |||||||||| ||||| ||||||||||    
T  48977581 ctcggtatccgatccaaggaccgactaatccgaggggaccaatcccaccgcccacttgcaggggccccgtttaaagccagagc-aagctctgtatggact 48977483  T
Q  274 t-gcccaccgaaatt 287  Q
    |  ||||||||||||    
T  48977482 taacccaccgaaatt 48977468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 168 - 287
Target Start/End: Original strand, 49258259 - 49258379
Alignment:
Q  168 tttaaacctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttg-cggagccctgttttaagccagagcaaagctttgt 266  Q
    |||||| |||||||||||||||||| | ||||| ||| ||||||||||||| || |||||| |||  || |||| |||| |||||||||| ||||| |||    
T  49258259 tttaaaactcggtatccgatccaagaatcgactaatccgaggggaccaatcccaccgcccacttgtgggggccccgtttaaagccagagc-aagctctgt 49258357  T
Q  267 atggactt-gcccaccgaaatt 287  Q
    |||||||| |||||||||||||    
T  49258358 atggacttagcccaccgaaatt 49258379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 175 - 274
Target Start/End: Original strand, 24165719 - 24165817
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgcggagccctgttttaagccagagcaaagctttgtatggactt 274  Q
    |||||||||||||||||| | ||||| ||| ||||||| ||||| || |||||| |||||| |||| |||| |||||||||| ||||| |||||||||||    
T  24165719 ctcggtatccgatccaagaatcgactaatccgaggggaacaatcccaccgcccacttgcggggccccgtttaaagccagagc-aagctctgtatggactt 24165817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 175 - 287
Target Start/End: Original strand, 10190746 - 10190859
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgtatggact 273  Q
    |||||||||||||||||| | ||||| ||| ||||||||||||| || || ||| |||| || |||| |||| |||||||||| ||||| ||||||||||    
T  10190746 ctcggtatccgatccaagaatcgactaatccgaggggaccaatcccaccgtccacttgcgggggccccgtttaaagccagagc-aagctctgtatggact 10190844  T
Q  274 t-gcccaccgaaatt 287  Q
    | |||||||||||||    
T  10190845 tagcccaccgaaatt 10190859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 175 - 287
Target Start/End: Complemental strand, 26174306 - 26174193
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgtatggact 273  Q
    |||||||||||||||||| | ||||| ||| ||||||||||||| || |||||| |||| || ||||| ||| |||||||||| ||||| ||||||||||    
T  26174306 ctcggtatccgatccaagaatcgactaatccgaggggaccaatcccaccgcccacttgcgggggccctatttaaagccagagc-aagctctgtatggact 26174208  T
Q  274 t-gcccaccgaaatt 287  Q
    |  ||||||||||||    
T  26174207 taacccaccgaaatt 26174193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 175 - 287
Target Start/End: Original strand, 40133453 - 40133566
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgtatggact 273  Q
    |||||||||||||||||| | ||||| ||  ||||||||||||| || |||||| |||| || |||| |||| |||||||||| ||||| ||||||||||    
T  40133453 ctcggtatccgatccaagaatcgactaattcgaggggaccaatcccaccgcccacttgcgggggccccgtttaaagccagagc-aagctctgtatggact 40133551  T
Q  274 t-gcccaccgaaatt 287  Q
    | |||||||||||||    
T  40133552 tagcccaccgaaatt 40133566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 168 - 287
Target Start/End: Complemental strand, 35493111 - 35492991
Alignment:
Q  168 tttaaacctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgt 266  Q
    |||||| |||||||| | ||||||| | ||||| ||| ||||||||||||| || |||||| |||| || |||| |||| |||||||||| ||||| |||    
T  35493111 tttaaaactcggtattcaatccaagaatcgactaatccgaggggaccaatcccaccgcccacttgcgggggccccgtttaaagccagagc-aagctctgt 35493013  T
Q  267 atggactt-gcccaccgaaatt 287  Q
    |||||||| |||||||||||||    
T  35493012 atggacttagcccaccgaaatt 35492991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 175 - 287
Target Start/End: Original strand, 53424181 - 53424293
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgcggagccctgttttaagccagagcaaagctttgtatggactt 274  Q
    |||||||||||||||||| | ||||| ||| ||||||||||||| || ||| || |||||| | || |||| |||||| |||||| || |||||||||||    
T  53424181 ctcggtatccgatccaagaatcgactaatccgaggggaccaatcccaccgctcacttgcgggggcccgtttaaagccatagcaaa-ctctgtatggactt 53424279  T
Q  275 -gcccaccgaaatt 287  Q
     |||||||||||||    
T  53424280 agcccaccgaaatt 53424293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 175 - 287
Target Start/End: Complemental strand, 1178363 - 1178252
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgcggagccctgttttaagccagagcaaagctttgtatggactt 274  Q
    ||||||||||||||||||   ||||| ||| ||||| ||||||| || ||||||  || || ||||  ||| |||||||||||||| | |||||||||||    
T  1178363 ctcggtatccgatccaagattcgactaatccgaggg-accaatcccaccgcccacgtgtggggccccatttaaagccagagcaaagttctgtatggactt 1178265  T
Q  275 gcccaccgaaatt 287  Q
    |||||||||||||    
T  1178264 gcccaccgaaatt 1178252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 287
Target Start/End: Original strand, 8097283 - 8097396
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgtatggact 273  Q
    |||||||||||||||||| | ||||| ||| ||||||||||||| || |||||| |||| || |||| |||| |||||||||| | ||| ||||||||||    
T  8097283 ctcggtatccgatccaagaatcgactaatccgaggggaccaatcccaccgcccacttgcgggggccccgtttaaagccagagc-atgctctgtatggact 8097381  T
Q  274 t-gcccaccgaaatt 287  Q
    | ||||| |||||||    
T  8097382 tagcccatcgaaatt 8097396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 287
Target Start/End: Original strand, 8456154 - 8456267
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgtatggact 273  Q
    ||||||||||||| |||| | ||||| ||| ||||||||||||| ||  ||||| |||| || |||| |||| |||||||||| ||||| ||||||||||    
T  8456154 ctcggtatccgattcaagaatcgactaatccgaggggaccaatcccactgcccacttgcgggggccccgtttaaagccagagc-aagctctgtatggact 8456252  T
Q  274 t-gcccaccgaaatt 287  Q
    | |||||||||||||    
T  8456253 tagcccaccgaaatt 8456267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 287
Target Start/End: Original strand, 10083823 - 10083936
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttg-cggagccctgttttaagccagagcaaagctttgtatggact 273  Q
    |||||||||||||||||| | ||||| ||| ||||||||||||| || || ||| |||  || |||| |||| |||||||||| ||||| ||||||||||    
T  10083823 ctcggtatccgatccaagaatcgactaatccgaggggaccaatcccaccgtccacttgtgggggccccgtttaaagccagagc-aagctctgtatggact 10083921  T
Q  274 t-gcccaccgaaatt 287  Q
    | |||||||||||||    
T  10083922 tagcccaccgaaatt 10083936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 287
Target Start/End: Complemental strand, 32151617 - 32151504
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgtatggact 273  Q
    |||||||||||||||||| | ||||| ||  |||||||||||||||| |||||| |||| || |||| |||| |||||||||| ||||| ||||||  ||    
T  32151617 ctcggtatccgatccaagaatcgactaattcgaggggaccaatctcaccgcccacttgcgggggccccgtttaaagccagagc-aagctctgtatgagct 32151519  T
Q  274 t-gcccaccgaaatt 287  Q
    | |||||||||||||    
T  32151518 tagcccaccgaaatt 32151504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 168 - 287
Target Start/End: Original strand, 18176884 - 18177004
Alignment:
Q  168 tttaaacctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgt 266  Q
    |||||| ||| |||||||||||||| | ||||| ||| || |||||||||| || |||||| |||| || |||| |||| |||||||||| ||||| |||    
T  18176884 tttaaaactctgtatccgatccaagaatcgactaatccgatgggaccaatcccaccgcccacttgcgggggccccgtttaaagccagagc-aagctctgt 18176982  T
Q  267 atggactt-gcccaccgaaatt 287  Q
    |||||||| | |||||||||||    
T  18176983 atggacttagtccaccgaaatt 18177004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 168 - 287
Target Start/End: Original strand, 39041849 - 39041969
Alignment:
Q  168 tttaaacctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgt 266  Q
    |||||| |||||||||||||||||| | ||||| ||| ||| ||||||||| || | |||| |||| || |||| |||| |||||||||| ||||| ||     
T  39041849 tttaaaactcggtatccgatccaagaatcgactaatccgagtggaccaatcccaccacccacttgcgggggccccgtttaaagccagagc-aagctctgc 39041947  T
Q  267 atggactt-gcccaccgaaatt 287  Q
    |||||||| |||||||||||||    
T  39041948 atggacttagcccaccgaaatt 39041969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 175 - 258
Target Start/End: Complemental strand, 48105070 - 48104986
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttg-cggagccctgttttaagccagagcaa 258  Q
    |||||||||||||||||| | ||||| ||| || ||||||||||||| |||||| |||  || ||||||||| ||||||||||||    
T  48105070 ctcggtatccgatccaagaatcgactaatccgaagggaccaatctcaccgcccacttgtgggggccctgtttaaagccagagcaa 48104986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 176 - 287
Target Start/End: Original strand, 30695251 - 30695366
Alignment:
Q  176 tcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgcgga-gccctgttttaagccag----agcaaagctttgtatgg 270  Q
    ||||||||||||||||| ||||||| ||| || |||||||||| ||||||||| ||||| | || | ||| ||||||||    ||||||||| ||||| |    
T  30695251 tcggtatccgatccaaggaccgactaatctga-gggaccaatcccatcgcccacttgcgaaggcaccgttctaagccagccgaagcaaagctctgtatag 30695349  T
Q  271 acttgcccaccgaaatt 287  Q
    |||||||||| ||||||    
T  30695350 acttgcccactgaaatt 30695366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 234
Target Start/End: Complemental strand, 24407461 - 24407395
Alignment:
Q  168 tttaaacctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgcg 234  Q
    |||||| |||||||||||||||||| | ||||| ||| ||||||||||||| || |||||| |||||    
T  24407461 tttaaaactcggtatccgatccaagaatcgactaatccgaggggaccaatcccaccgcccacttgcg 24407395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 287
Target Start/End: Original strand, 25289719 - 25289831
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgtatggact 273  Q
    |||||||||||||||||| | ||||| ||  || |||||||||| || |||||| |||| || |||| |||| |||||||||| ||||| ||||||||||    
T  25289719 ctcggtatccgatccaagaatcgactaattcga-gggaccaatcccaccgcccacttgcgggggccccgtttaaagccagagc-aagctctgtatggact 25289816  T
Q  274 t-gcccaccgaaatt 287  Q
    | |||||||||||||    
T  25289817 tagcccaccgaaatt 25289831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 287
Target Start/End: Complemental strand, 25379950 - 25379841
Alignment:
Q  179 gtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgtatggactt-gc 276  Q
    |||||||||||||| | ||||| ||| ||||||||||||| || |||||  |||| || |||| |||| |||||||||| ||||| ||||||||||| ||    
T  25379950 gtatccgatccaagaatcgactaatccgaggggaccaatcccaccgcccgcttgcgggggccccgtttaaagccagagc-aagctctgtatggacttagc 25379852  T
Q  277 ccaccgaaatt 287  Q
    || ||||||||    
T  25379851 cctccgaaatt 25379841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 287
Target Start/End: Original strand, 45272420 - 45272533
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgtatggact 273  Q
    ||||||||||||||||||   | ||| ||| ||||||||||||| || |||||| |||| || |||| |||| |||||||||| |||||  |||||||||    
T  45272420 ctcggtatccgatccaagagtcaactaatccgaggggaccaatcccaccgcccacttgcgggggccccgtttaaagccagagc-aagctccgtatggact 45272518  T
Q  274 t-gcccaccgaaatt 287  Q
    | |||||||||||||    
T  45272519 tagcccaccgaaatt 45272533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 287
Target Start/End: Complemental strand, 46576541 - 46576428
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgtatggact 273  Q
    |||||||||||||||||| | ||||| |||  ||||||||||||  | |||||| |||| || |||| |||| |||||||||| ||||| ||||||||||    
T  46576541 ctcggtatccgatccaagaatcgactaatccaaggggaccaatccgaccgcccacttgcgggggccccgtttaaagccagagc-aagctctgtatggact 46576443  T
Q  274 t-gcccaccgaaatt 287  Q
    | |||||| ||||||    
T  46576442 tagcccactgaaatt 46576428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 287
Target Start/End: Original strand, 53233915 - 53234027
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgtatggact 273  Q
    |||||||||||||| ||| | ||||| ||| ||||||||||||| || |||||| |||| || |||| ||||  ||||||||| ||||| ||||||||||    
T  53233915 ctcggtatccgatc-aagaatcgactaatccgaggggaccaatcccaccgcccacttgcgggggccccgtttagagccagagc-aagctctgtatggact 53234012  T
Q  274 t-gcccaccgaaatt 287  Q
    | |||||||||||||    
T  53234013 tagcccaccgaaatt 53234027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 256
Target Start/End: Original strand, 55371302 - 55371380
Alignment:
Q  179 gtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgcg-gagccctgttttaagccagagc 256  Q
    |||||||||||||| | ||||| ||| ||||||||||||| || |||||| ||||| | |||| |||||||||||||||    
T  55371302 gtatccgatccaaggatcgactaatccgaggggaccaatcccaccgcccacttgcgagggccccgttttaagccagagc 55371380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 207 - 287
Target Start/End: Complemental strand, 1242134 - 1242053
Alignment:
Q  207 aggggaccaatctcatcgcccatttgcggagccctgttttaagccagagcaaagctttgtatggactt-gcccaccgaaatt 287  Q
    |||||||||||  || |||||| ||||||  ||| |||| |||||||||||||||| ||||||||||| ||||||| |||||    
T  1242134 aggggaccaattccaccgcccacttgcgggaccccgtttaaagccagagcaaagctctgtatggacttagcccaccaaaatt 1242053  T

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Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 168 - 287
Target Start/End: Complemental strand, 21363143 - 21363023
Alignment:
Q  168 tttaaacctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgt 266  Q
    |||||| |||||||||||||||||| | ||| | ||| ||||| ||||||| || |||||| |||| || || | |||| |||||||||| ||||| |||    
T  21363143 tttaaaactcggtatccgatccaagaatcgattaatccgagggaaccaatcccaccgcccacttgcgggggctccgtttaaagccagagc-aagctctgt 21363045  T
Q  267 atggactt-gcccaccgaaatt 287  Q
    |||||||| ||| |||||||||    
T  21363044 atggacttagcctaccgaaatt 21363023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 287
Target Start/End: Original strand, 8958039 - 8958153
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgcggag--ccctgttttaagccagagcaaagctttgtatggac 272  Q
    ||||||||| |||||||| | ||| | ||||||||||||||||| || |||||| |||||| |  |||  ||| |||| ||||| |||||||||||||||    
T  8958039 ctcggtatctgatccaagaatcgattaatcagaggggaccaatcccaccgcccacttgcgggggccccattttaaagctagagc-aagctttgtatggac 8958137  T
Q  273 tt-gcccaccgaaatt 287  Q
    || ||||||| |||||    
T  8958138 ttagcccaccaaaatt 8958153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 287
Target Start/End: Original strand, 30807157 - 30807270
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc--ggagccctgttttaagccagagcaaagctttgtatggac 272  Q
    |||||||||||||||||| | ||||| ||| || ||||||||||  | |||||| ||||  || |||| |||| |||||||||| ||||| |||||||||    
T  30807157 ctcggtatccgatccaagaatcgactaatccga-gggaccaatcctaccgcccacttgcggggggccccgtttaaagccagagc-aagctctgtatggac 30807254  T
Q  273 tt-gcccaccgaaatt 287  Q
    || |||||||||||||    
T  30807255 ttagcccaccgaaatt 30807270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 287
Target Start/End: Original strand, 53288710 - 53288829
Alignment:
Q  168 tttaaacctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgcggagccctgttttaagccagagcaaagctttgta 267  Q
    |||||| || |||| |||||||||  | ||||| ||  |||||||| ||||||| || || ||||||| |||| |||| |||||| ||||| ||||||||    
T  53288710 tttaaaacttggtaaccgatccaataatcgactaattcgaggggactaatctcaccgtccgtttgcggggccccgtttaaagccaaagcaa-gctttgta 53288808  T
Q  268 tggactt-gcccaccgaaatt 287  Q
    ||||||| | |||||||||||    
T  53288809 tggacttagtccaccgaaatt 53288829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 235
Target Start/End: Original strand, 53848438 - 53848498
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgcgg 235  Q
    |||||||||||||||||| | ||||| ||| ||||||||||||| || |||||| ||||||    
T  53848438 ctcggtatccgatccaagaatcgactaatccgaggggaccaatcccaccgcccacttgcgg 53848498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 176 - 235
Target Start/End: Complemental strand, 26159003 - 26158944
Alignment:
Q  176 tcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgcgg 235  Q
    ||||||||||||||||| ||||||| ||| ||||||| ||||| || |||||| ||||||    
T  26159003 tcggtatccgatccaaggaccgactaatccgaggggatcaatcccaccgcccacttgcgg 26158944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 176 - 274
Target Start/End: Complemental strand, 30257816 - 30257718
Alignment:
Q  176 tcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgtatggactt 274  Q
    ||||||||||||||||| | ||||| ||| ||||||||||||  || |||||| |||| || ||||  ||| |||||||||| ||||| |||||||||||    
T  30257816 tcggtatccgatccaagaatcgactaatccgaggggaccaatgccaccgcccacttgcgggggccccatttaaagccagagc-aagctctgtatggactt 30257718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 169 - 228
Target Start/End: Original strand, 50731235 - 50731294
Alignment:
Q  169 ttaaacctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgccca 228  Q
    ||||| |||||||||||||||||| | ||||| ||| ||||||||||||| || ||||||    
T  50731235 ttaaaactcggtatccgatccaaggatcgactaatctgaggggaccaatcccaccgccca 50731294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 169 - 228
Target Start/End: Complemental strand, 50781619 - 50781560
Alignment:
Q  169 ttaaacctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgccca 228  Q
    ||||| |||||||||||||||||| | ||||| ||| ||||||||||||| || ||||||    
T  50781619 ttaaaactcggtatccgatccaaggatcgactaatctgaggggaccaatcccaccgccca 50781560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 258
Target Start/End: Complemental strand, 1693033 - 1692943
Alignment:
Q  168 tttaaacctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgcggagccctgttttaagccagagcaa 258  Q
    |||||| ||||||||||||| |||| | ||||| ||| |||||| | |||| || |||||| |||||| | ||||| | ||||||||||||    
T  1693033 tttaaaactcggtatccgattcaagaatcgactaatctgagggggcaaatcccaccgcccacttgcgggggcctgtctaaagccagagcaa 1692943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 287
Target Start/End: Original strand, 45529759 - 45529871
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgtatggact 273  Q
    |||||||||||||| ||| | ||||| ||| ||||||||||||| || |||||| |||| || | || |||| |||||||||| ||||| ||||||||||    
T  45529759 ctcggtatccgatc-aagaatcgactaatccgaggggaccaatcccaccgcccacttgcggggggcccgtttaaagccagagc-aagctctgtatggact 45529856  T
Q  274 t-gcccaccgaaatt 287  Q
    | ||||| |||||||    
T  45529857 tagcccatcgaaatt 45529871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 259
Target Start/End: Original strand, 33698710 - 33698795
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaa 259  Q
    ||||| ||||||||| || | ||||| ||  ||||||||||||| || | ||||||||| ||||||| |||| |||||||||||||    
T  33698710 ctcggcatccgatccgagaatcgactaatttgaggggaccaatcccaccacccatttgcgggagccccgtttaaagccagagcaaa 33698795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 272
Target Start/End: Complemental strand, 54475881 - 54475777
Alignment:
Q  168 tttaaacctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgcgg-agccctgttttaagccagagcaaagctttgt 266  Q
    |||||| ||||||||| |||||||| | ||||| |||  |||||||||||| || |||||| ||||||  |||| |||| |||||| ||| ||||| |||    
T  54475881 tttaaaactcggtatctgatccaagaatcgactaatccaaggggaccaatcccaccgcccacttgcggtggccccgtttaaagccaaagc-aagctctgt 54475783  T
Q  267 atggac 272  Q
    ||||||    
T  54475782 atggac 54475777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0217 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 168 - 287
Target Start/End: Original strand, 7306 - 7426
Alignment:
Q  168 tttaaacctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgt 266  Q
    |||||| || ||||||||||||||| | ||||| ||| ||||||||||||| || |||||| |||| || |||| |||| ||||||||| |||||| |||    
T  7306 tttaaaacttggtatccgatccaagaatcgactaatccgaggggaccaatcccaccgcccacttgcgggggccccgtttaaagccagag-aaagctctgt 7404  T
Q  267 atggactt-gcccaccgaaatt 287  Q
    |||||||| |||||||||||||    
T  7405 atggacttagcccaccgaaatt 7426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 168 - 258
Target Start/End: Complemental strand, 66954 - 66863
Alignment:
Q  168 tttaaacctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaa 258  Q
    |||||| |||||||||||||||||| ||||||| ||| ||||||||||||| || |||||| |||| || |||| |||| ||||||||||||    
T  66954 tttaaaactcggtatccgatccaaggaccgactaatccgaggggaccaatcccaccgcccacttgcgggggccccgtttaaagccagagcaa 66863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1175 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold1175
Description:

Target: scaffold1175; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 168 - 274
Target Start/End: Original strand, 2423 - 2529
Alignment:
Q  168 tttaaacctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgt 266  Q
    |||||| ||||||||||||| |||| || |||| ||| ||||||||||||| || |||||| |||| || |||| |||| |||||||||| ||||| |||    
T  2423 tttaaaactcggtatccgattcaaggacggactaatccgaggggaccaatcccaccgcccacttgcgggggccccgtttaaagccagagc-aagctctgt 2521  T
Q  267 atggactt 274  Q
    ||||||||    
T  2522 atggactt 2529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 287
Target Start/End: Complemental strand, 40517 - 40405
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgtatggact 273  Q
    |||||||||||||||||| | ||||| ||| || |||||||||| || |||||| |||| || |||| |||| |||||||||| ||||| ||||||||||    
T  40517 ctcggtatccgatccaagaatcgactaatccga-gggaccaatcccaccgcccacttgcgggggccccgtttaaagccagagc-aagctctgtatggact 40420  T
Q  274 t-gcccaccgaaatt 287  Q
    | |||||||||||||    
T  40419 tagcccaccgaaatt 40405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 287
Target Start/End: Complemental strand, 162002 - 161889
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgtatggact 273  Q
    ||||||||| |||||||| | ||||| ||| ||||||||||||| || |||||| |||| || ||||  ||  |||||||||| ||||| ||||||||||    
T  162002 ctcggtatctgatccaagaatcgactaatccgaggggaccaatcccaccgcccacttgcgggggccccattaaaagccagagc-aagctctgtatggact 161904  T
Q  274 t-gcccaccgaaatt 287  Q
    | |||||||||||||    
T  161903 tagcccaccgaaatt 161889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 287
Target Start/End: Complemental strand, 39285 - 39172
Alignment:
Q  175 ctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgtatggac- 272  Q
    ||||||||| |||||||| | ||||| ||| ||||||||||||| || |||||| |||| || |||| |||| |||||||| | ||| | |||||||||     
T  39285 ctcggtatctgatccaagaatcgactaatccgaggggaccaatcccaccgcccacttgcgggggccccgtttaaagccagaac-aagttctgtatggaca 39187  T
Q  273 ttgcccaccgaaatt 287  Q
    | |||||||||||||    
T  39186 tagcccaccgaaatt 39172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 287
Target Start/End: Original strand, 97363 - 97483
Alignment:
Q  168 tttaaacctcggtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgt 266  Q
    |||||| ||||||||||| |||||  ||||||| ||  ||| ||||||||| || |||||| |||| || | || |||| ||| |||||| ||||| |||    
T  97363 tttaaaactcggtatccggtccaaaaaccgactaatacgagaggaccaatcccaccgcccacttgcgggggtcccgtttaaagtcagagc-aagctctgt 97461  T
Q  267 atggactt-gcccaccgaaatt 287  Q
    |||||||| |||||||||||||    
T  97462 atggacttagcccaccgaaatt 97483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 274
Target Start/End: Original strand, 41653 - 41747
Alignment:
Q  179 gtatccgatccaagtaccgacttatcagaggggaccaatctcatcgcccatttgc-ggagccctgttttaagccagagcaaagctttgtatggactt 274  Q
    |||||||||| ||| | ||||| ||| ||||||||||||| ||| ||||| |||| || |||| |||| |||||||||| ||||| |||||||||||    
T  41653 gtatccgatc-aagaatcgactaatccgaggggaccaatcccattgcccacttgcaggggccccgtttaaagccagagc-aagctctgtatggactt 41747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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