View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8950_low_81 (Length: 281)

Name: NF8950_low_81
Description: NF8950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8950_low_81
NF8950_low_81
[»] chr1 (1 HSPs)
chr1 (1-266)||(15594091-15594356)
[»] chr7 (7 HSPs)
chr7 (1-263)||(8586559-8586821)
chr7 (69-259)||(8615836-8616026)
chr7 (44-166)||(3146363-3146485)
chr7 (44-161)||(8645976-8646093)
chr7 (50-161)||(8640653-8640764)
chr7 (99-189)||(13334292-13334382)
chr7 (209-263)||(8666680-8666734)
[»] chr2 (3 HSPs)
chr2 (60-244)||(16662867-16663051)
chr2 (209-258)||(12246267-12246316)
chr2 (209-253)||(16658383-16658427)
[»] chr4 (1 HSPs)
chr4 (1-263)||(30774305-30774567)
[»] chr8 (2 HSPs)
chr8 (50-159)||(43743918-43744027)
chr8 (46-156)||(43445783-43445894)
[»] chr5 (1 HSPs)
chr5 (71-159)||(28219041-28219129)


Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 15594091 - 15594356
Alignment:
Q  1 gcaaatttgcagccactgtaattgcaccatttatctttgtaacttctttagaagagagttttaatttgacatccttattcttcagagcatttctcaactt 100  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15594091 gcaaatttgtagccactgtaattgcaccattgatctttgtaacttctttagaagagagttttaatttgacatccttattcttcagagcatttctcaactt 15594190  T
Q  101 gtaaacacagtcatctaatgcattcattacctccgccttccttaggaatttctcatcttcagcacgatattcctcggcttcttgaatcannnnnnnaatt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||    
T  15594191 gtaaacacagtcatctaatgcattcattacctccgccttccttaggaatttctcatcttcagcacgatattcctcggcttcttgaatcatttttttaatt 15594290  T
Q  201 tcatatgctgacaacctttctttgtcattggttattgtgatctcgtttgtattgccagtggatgtt 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15594291 tcatatgctgacaacctttctttgtcattggttattgtgatctcgtttgtattgccagtggatgtt 15594356  T

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Target: chr7 (Bit Score: 94; Significance: 6e-46; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 8586821 - 8586559
Alignment:
Q  1 gcaaatttgcagccactgtaattgcaccatttatctttgtaacttctttagaagagagttttaatttgacatccttattcttcagagcatttctcaactt 100  Q
    ||||||||| ||||| ||||||||||  ||| |||||| |||||| || |||||||   |||| ||| | |||||||||||| |||||||| || |||||    
T  8586821 gcaaatttgtagccattgtaattgcatgattgatctttttaactttttgagaagagcactttagtttaatatccttattctttagagcattccttaactt 8586722  T
Q  101 gtaaacacagtcatctaatgcattcattacctccgccttccttaggaatttctcatcttcagcacgatattcctcggcttcttgaatcannnnnnnaatt 200  Q
    ||||||||| |||||||||| |||||||||||  ||||||||||||||||||| ||| |||||  | ||  |||| |||||||||||||       ||||    
T  8586721 gtaaacacaatcatctaatgaattcattaccttagccttccttaggaatttctgatcctcagcgaggtacacctctgcttcttgaatcagtcttttaatt 8586622  T
Q  201 tcatatgctgacaacctttctttgtcattggttattgtgatctcgtttgtattgccagtggat 263  Q
    ||||  || || ||||||||||||||||||||||| || || |||||||||||||||| ||||    
T  8586621 tcatcagccgataacctttctttgtcattggttatcgttatttcgtttgtattgccagaggat 8586559  T

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Target: chr7; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 69 - 259
Target Start/End: Original strand, 8615836 - 8616026
Alignment:
Q  69 acatccttattcttcagagcatttctcaacttgtaaacacagtcatctaatgcattcattacctccgccttccttaggaatttctcatcttcagcacgat 168  Q
    |||||||||||||| |||||||| |||||||||||||  |||||||||||| ||||||||||||  ||||||||||||||||| ||||||||||| || |    
T  8615836 acatccttattctttagagcattcctcaacttgtaaatgcagtcatctaattcattcattaccttggccttccttaggaatttttcatcttcagcgcggt 8615935  T
Q  169 attcctcggcttcttgaatcannnnnnnaatttcatatgctgacaacctttctttgtcattggttattgtgatctcgtttgtattgccagt 259  Q
    | ||||| |||||||||||||       ||||||||  || || ||||||||||||||||||||||| || || || ||||||||||||||    
T  8615936 actcctctgcttcttgaatcagttttttaatttcatcagccgataacctttctttgtcattggttatcgttatttcatttgtattgccagt 8616026  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 44 - 166
Target Start/End: Original strand, 3146363 - 3146485
Alignment:
Q  44 ttctttagaagagagttttaatttgacatccttattcttcagagcatttctcaacttgtaaacacagtcatctaatgcattcattacctccgccttcctt 143  Q
    ||||| ||| ||||| ||||  || |||||||| ||||| | ||||||| ||| |||||||||||| | |||||||||||||||||| |  |||||||||    
T  3146363 ttcttgagaggagagatttatattcacatccttcttctttaaagcatttttcatcttgtaaacacaataatctaatgcattcattacattggccttcctt 3146462  T
Q  144 aggaatttctcatcttcagcacg 166  Q
    || ||||| ||||| ||| ||||    
T  3146463 agaaatttttcatcctcaacacg 3146485  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 161
Target Start/End: Original strand, 8645976 - 8646093
Alignment:
Q  44 ttctttagaagagagttttaatttgacatccttattcttcagagcatttctcaacttgtaaacacagtcatctaatgcattcattacctccgccttcctt 143  Q
    ||||||||| ||||| |||||||| ||||||||  |||| ||||| ||  ||| ||| ||||  || |  |||||| |||||||||| |  |||||||||    
T  8645976 ttctttagatgagagatttaatttaacatccttcctctttagagctttcttcagcttataaatgcaatggtctaatccattcattacattggccttcctt 8646075  T
Q  144 aggaatttctcatcttca 161  Q
    ||||||||||||||||||    
T  8646076 aggaatttctcatcttca 8646093  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 50 - 161
Target Start/End: Complemental strand, 8640764 - 8640653
Alignment:
Q  50 agaagagagttttaatttgacatccttattcttcagagcatttctcaacttgtaaacacagtcatctaatgcattcattacctccgccttccttaggaat 149  Q
    ||||||||| |||| ||| | |||||||||||| ||||||||  ||| ||||||||  || |  |||||| |||||||||  |  |||||||||||||||    
T  8640764 agaagagagctttagtttaatatccttattctttagagcattcttcatcttgtaaatgcaatagtctaatccattcattaaattggccttccttaggaat 8640665  T
Q  150 ttctcatcttca 161  Q
    |||||| |||||    
T  8640664 ttctcagcttca 8640653  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 189
Target Start/End: Complemental strand, 13334382 - 13334292
Alignment:
Q  99 ttgtaaacacagtcatctaatgcattcattacctccgccttccttaggaatttctcatcttcagcacgatattcctcggcttcttgaatca 189  Q
    |||||||||||   ||||||||||||||||||||  |||||||||| |||||||| ||||||  || | |||||||  ||||||| |||||    
T  13334382 ttgtaaacacaagaatctaatgcattcattaccttggccttccttaagaatttcttatcttcgacatggtattccttagcttctttaatca 13334292  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 263
Target Start/End: Original strand, 8666680 - 8666734
Alignment:
Q  209 tgacaacctttctttgtcattggttattgtgatctcgtttgtattgccagtggat 263  Q
    ||||||||||||||||||||||||||| ||||||  |||  ||||||| ||||||    
T  8666680 tgacaacctttctttgtcattggttatggtgatcatgttcatattgcctgtggat 8666734  T

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Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 60 - 244
Target Start/End: Complemental strand, 16663051 - 16662867
Alignment:
Q  60 tttaatttgacatccttattcttcagagcatttctcaacttgtaaacacagtcatctaatgcattcattacctccgccttccttaggaatttctcatctt 159  Q
    ||||||||||||| ||||||||| |||||||| ||||| |||||||  |||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  16663051 tttaatttgacattcttattctttagagcattcctcaatttgtaaatgcagtcatctaatgcattcattaccttggccttccttaggaatttctcatctt 16662952  T
Q  160 cagcacgatattcctcggcttcttgaatcannnnnnnaatttcatatgctgacaacctttctttgtcattggttattgtgatctc 244  Q
    ||||| | || ||||  |||||||||||||       ||||||   |   || ||||||||||||||||||||||| ||||||||    
T  16662951 cagcatggtactccttagcttcttgaatcaatttttcaatttcgactctggataacctttctttgtcattggttatcgtgatctc 16662867  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 258
Target Start/End: Complemental strand, 12246316 - 12246267
Alignment:
Q  209 tgacaacctttctttgtcattggttattgtgatctcgtttgtattgccag 258  Q
    ||||||||||||||||| ||| |||||||| ||||| |||| ||||||||    
T  12246316 tgacaacctttctttgtaattagttattgtaatctcatttgaattgccag 12246267  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 253
Target Start/End: Complemental strand, 16658427 - 16658383
Alignment:
Q  209 tgacaacctttctttgtcattggttattgtgatctcgtttgtatt 253  Q
    |||||| |||||||| ||||||||||| ||||||| |||||||||    
T  16658427 tgacaatctttctttttcattggttatggtgatcttgtttgtatt 16658383  T

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Target: chr4 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 30774305 - 30774567
Alignment:
Q  1 gcaaatttgcagccactgtaattgcaccatttatctttgtaacttctttagaagagagttttaatttgacatccttattcttcagagcatttctcaactt 100  Q
    ||||||||| |||||||| ||||||| || | |||||| | | || || ||| || || ||||| || || |||||| |||| ||| |||| ||||||||    
T  30774305 gcaaatttgtagccactgcaattgcatcagtgatctttttgagtttttgagatgatagctttaaatttacgtccttaatctttagaccattcctcaactt 30774404  T
Q  101 gtaaacacagtcatctaatgcattcattacctccgccttccttaggaatttctcatcttcagcacgatattcctcggcttcttgaatcannnnnnnaatt 200  Q
    |||||  |||  |||||||||||||||||||   | |||||||||||||||||||||||||||||| || ||    |||||||||||||       ||||    
T  30774405 gtaaatgcagcaatctaatgcattcattaccatagacttccttaggaatttctcatcttcagcacggtactctctagcttcttgaatcattttgttaatt 30774504  T
Q  201 tcatatgctgacaacctttctttgtcattggttattgtgatctcgtttgtattgccagtggat 263  Q
    || | |   || |||||||||||||| |||||||| |||||||| ||  ||||||||||||||    
T  30774505 tcttctctggataacctttctttgtcgttggttatcgtgatctcattcatattgccagtggat 30774567  T

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Target: chr8 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 50 - 159
Target Start/End: Original strand, 43743918 - 43744027
Alignment:
Q  50 agaagagagttttaatttgacatccttattcttcagagcatttctcaacttgtaaacacagtcatctaatgcattcattacctccgccttccttaggaat 149  Q
    |||||| || |||||||| |||||||||||||| | |||||| |||||||||||||| || |||||||||||||||||||| |  || ||||| || |||    
T  43743918 agaagaaagctttaatttaacatccttattctttacagcattcctcaacttgtaaacccattcatctaatgcattcattacattggctttcctaagaaat 43744017  T
Q  150 ttctcatctt 159  Q
    ||||||||||    
T  43744018 ttctcatctt 43744027  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 46 - 156
Target Start/End: Original strand, 43445783 - 43445894
Alignment:
Q  46 ctttagaagagagttttaatttgacatccttattcttcagagcatttctcaacttgtaaa-cacagtcatctaatgcattcattacctccgccttcctta 144  Q
    ||||||| ||||| |||||||| | |||||||||||| | | |||| |||||| |||||| | || |||||||||||||||||||| |  |||||||| |    
T  43445783 ctttagacgagagctttaatttaatatccttattctttacaacattcctcaacctgtaaaacccattcatctaatgcattcattacattggccttcctaa 43445882  T
Q  145 ggaatttctcat 156  Q
    | ||||||||||    
T  43445883 gaaatttctcat 43445894  T

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Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 71 - 159
Target Start/End: Original strand, 28219041 - 28219129
Alignment:
Q  71 atccttattcttcagagcatttctcaacttgtaaacacagtcatctaatgcattcattacctccgccttccttaggaatttctcatctt 159  Q
    |||||||||||| |||||||| |||||||||||||| |||||||||||||||||||| || |  ||||||||||| ||||| |||||||    
T  28219041 atccttattctttagagcattcctcaacttgtaaacgcagtcatctaatgcattcatgacattggccttccttagaaatttttcatctt 28219129  T

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