View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8950_low_83 (Length: 278)
Name: NF8950_low_83
Description: NF8950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8950_low_83 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 86; Significance: 4e-41; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 5103757 - 5103846
Alignment:
| Q |
19 |
ggtttcaatgttgctttcttcattgcatatacgaaccaaacattcgcttcttgtttcgtttccgctttcaatcatcgccattttcaccaa |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
5103757 |
ggtttcaatgttgctttcttcattgcatatacgaaccaaacattcgcttcttgtttcgtttccgttttcaatcatcgccattttcaccaa |
5103846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 138 - 266
Target Start/End: Original strand, 5103878 - 5104004
Alignment:
| Q |
138 |
gttgagtaggaaacttagtagagaaggagtatgtatttgtagtact--tttccgttacgatcttttttgtcgttttcacaaaatatttaaaaaatataaa |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
5103878 |
gttgagtaggaaacttagtagagaaggagtatat----gtaacactaatttccgttacgatcttttttgtcgttttcacaaaatatttaaaaaataaaaa |
5103973 |
T |
|
| Q |
236 |
actgtaataatgactttggtctattgatgtc |
266 |
Q |
| |
|
| ||||||||||||||||||||||||||||| |
|
|
| T |
5103974 |
agtgtaataatgactttggtctattgatgtc |
5104004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 23 - 104
Target Start/End: Complemental strand, 23254728 - 23254647
Alignment:
| Q |
23 |
tcaatgttgctttcttcattgcatatacgaaccaaacattcgcttcttgtttcgtttccgctttcaatcatcgccattttca |
104 |
Q |
| |
|
||||||| ||||||||||||||| ||||| ||||||||||| |||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
23254728 |
tcaatgtcgctttcttcattgcacatacgcaccaaacattcacttcttgtttcgtttccgttttcattcatcgccattttca |
23254647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University