View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8950_low_87 (Length: 272)
Name: NF8950_low_87
Description: NF8950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8950_low_87 |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 28161530 - 28161794
Alignment:
| Q |
1 |
taaaattgcagaagatctagcaacaggccttctctatatccaccaaaaccccggcatggctcacggaaatctgaaatcttccaatgtgttacttggtgcc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
28161530 |
taaaattgcagaagatctagcaacaggccttctctatatccaccaaaaccccggcatggctcatggaaatctgaaatcttccaatgtgttacttggtgcc |
28161629 |
T |
|
| Q |
101 |
gactttgagtcctgtctcactgattatggtctcactgtgttccttaatcccgacacaatggaggaaccaagtgccacttcttttttctatagagcacccg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28161630 |
gactttgagtcctgtctcactgattatggtctcactgtgttccttaatcccgacacaatggaggaaccaagtgccacttcttttttctatagagcacccg |
28161729 |
T |
|
| Q |
201 |
agtgccgcagttttcaacggccacaaactcaacctgccgatgtatacagctttgatgtccatctc |
265 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
28161730 |
agtgccgcagttttcaacggccacaaactcaacctgccgatgtatacagctttggtgtccttctc |
28161794 |
T |
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