View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8950_low_91 (Length: 248)

Name: NF8950_low_91
Description: NF8950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8950_low_91
NF8950_low_91
[»] chr2 (11 HSPs)
chr2 (98-229)||(10372283-10372414)
chr2 (147-215)||(10353548-10353616)
chr2 (89-221)||(10348212-10348344)
chr2 (147-211)||(9321407-9321471)
chr2 (144-206)||(9329035-9329097)
chr2 (149-211)||(9357614-9357676)
chr2 (148-211)||(10336275-10336338)
chr2 (155-211)||(9283833-9283889)
chr2 (149-211)||(9292359-9292421)
chr2 (149-206)||(9060772-9060829)
chr2 (153-206)||(9274948-9275001)
[»] chr4 (1 HSPs)
chr4 (147-215)||(26575300-26575368)
[»] chr3 (1 HSPs)
chr3 (147-211)||(37462929-37462993)
[»] scaffold0667 (1 HSPs)
scaffold0667 (144-204)||(4921-4981)
[»] chr1 (1 HSPs)
chr1 (150-211)||(29452951-29453012)


Alignment Details
Target: chr2 (Bit Score: 116; Significance: 4e-59; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 98 - 229
Target Start/End: Complemental strand, 10372414 - 10372283
Alignment:
Q  98 cttttctccctcttcctattcctattcttgaccccacaatcaaagcctccttatgtgttcatggcttcggttttgattctttatccggcgattacaaact 197  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||    
T  10372414 cttttctccctcttcctattcctattcttgaccccacaatcagagcctccttatgcgttcatggcttcggttttgattctttatccggcgatcacaaact 10372315  T
Q  198 cctcagaatatcttacttaatcgaccaccaaa 229  Q
    ||||||||| ||||||||||||||||||||||    
T  10372314 cctcagaatctcttacttaatcgaccaccaaa 10372283  T

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Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 147 - 215
Target Start/End: Complemental strand, 10353616 - 10353548
Alignment:
Q  147 cttatgtgttcatggcttcggttttgattctttatccggcgattacaaactcctcagaatatcttactt 215  Q
    |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||    
T  10353616 cttatgcgttcatggcttcggttttgattctgtatccggcgattacaaactcctcagaatctctaactt 10353548  T

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Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 89 - 221
Target Start/End: Complemental strand, 10348344 - 10348212
Alignment:
Q  89 acatcatcacttttctccctcttcctattcctattcttgacccc-acaatcaaagcctccttatgtgttcatggcttcggttttgattctttatccggcg 187  Q
    |||| ||| ||||||||||||||||||||||||||||| ||  | || | ||||  ||||||||| ||||| |||||||||||||||    ||||||| |    
T  10348344 acattatcccttttctccctcttcctattcctattcttaactacgacga-caaatgctccttatgcgttcacggcttcggttttgatcaaatatccggtg 10348246  T
Q  188 attacaaactcctcagaatatcttacttaatcga 221  Q
    ||||||||||||||||||| ||| ||||| ||||    
T  10348245 attacaaactcctcagaatttctcacttactcga 10348212  T

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Target: chr2; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 147 - 211
Target Start/End: Complemental strand, 9321471 - 9321407
Alignment:
Q  147 cttatgtgttcatggcttcggttttgattctttatccggcgattacaaactcctcagaatatctt 211  Q
    |||||| |||||||| |||||||||||| ||||| ||||||||||||||||||||||||| ||||    
T  9321471 cttatgcgttcatggtttcggttttgatcctttaaccggcgattacaaactcctcagaatctctt 9321407  T

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Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 144 - 206
Target Start/End: Complemental strand, 9329097 - 9329035
Alignment:
Q  144 ctccttatgtgttcatggcttcggttttgattctttatccggcgattacaaactcctcagaat 206  Q
    ||||||||| ||||| || |||||||||||| |||||||||| ||||||||||||||||||||    
T  9329097 ctccttatgcgttcacggtttcggttttgatcctttatccggtgattacaaactcctcagaat 9329035  T

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Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 149 - 211
Target Start/End: Complemental strand, 9357676 - 9357614
Alignment:
Q  149 tatgtgttcatggcttcggttttgattctttatccggcgattacaaactcctcagaatatctt 211  Q
    |||| ||||| ||||||||||||||| ||||| ||||||||||||||||||||||||| ||||    
T  9357676 tatgcgttcacggcttcggttttgatcctttaaccggcgattacaaactcctcagaatctctt 9357614  T

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Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 148 - 211
Target Start/End: Complemental strand, 10336338 - 10336275
Alignment:
Q  148 ttatgtgttcatggcttcggttttgattctttatccggcgattacaaactcctcagaatatctt 211  Q
    ||||| ||||| || |||||||||||||| ||||||| ||||||||||||||||||||| ||||    
T  10336338 ttatgcgttcacggattcggttttgattcattatccgccgattacaaactcctcagaatctctt 10336275  T

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Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 155 - 211
Target Start/End: Original strand, 9283833 - 9283889
Alignment:
Q  155 ttcatggcttcggttttgattctttatccggcgattacaaactcctcagaatatctt 211  Q
    |||| ||||||||||||||| ||||| |||||||||||||||||||| |||| ||||    
T  9283833 ttcacggcttcggttttgatcctttaaccggcgattacaaactcctccgaatctctt 9283889  T

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Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 149 - 211
Target Start/End: Complemental strand, 9292421 - 9292359
Alignment:
Q  149 tatgtgttcatggcttcggttttgattctttatccggcgattacaaactcctcagaatatctt 211  Q
    |||| ||||| |||||||||| |||| | ||| ||||||||||||||||||||||||| ||||    
T  9292421 tatgcgttcacggcttcggttatgatccattaaccggcgattacaaactcctcagaatctctt 9292359  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 206
Target Start/End: Original strand, 9060772 - 9060829
Alignment:
Q  149 tatgtgttcatggcttcggttttgattctttatccggcgattacaaactcctcagaat 206  Q
    |||| ||||| ||||||||||||||| | ||  ||| |||||||||||||||||||||    
T  9060772 tatgcgttcacggcttcggttttgatccattcaccgccgattacaaactcctcagaat 9060829  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 206
Target Start/End: Complemental strand, 9275001 - 9274948
Alignment:
Q  153 tgttcatggcttcggttttgattctttatccggcgattacaaactcctcagaat 206  Q
    |||||| || || ||||||||| |||||||||||||||| ||||| ||||||||    
T  9275001 tgttcacggttttggttttgatcctttatccggcgattataaacttctcagaat 9274948  T

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Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 147 - 215
Target Start/End: Complemental strand, 26575368 - 26575300
Alignment:
Q  147 cttatgtgttcatggcttcggttttgattctttatccggcgattacaaactcctcagaatatcttactt 215  Q
    |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  26575368 cttatgcgttcacggcttcggttttgattctttatccggcgattacaaactcctcagaatctcttactt 26575300  T

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Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 147 - 211
Target Start/End: Complemental strand, 37462993 - 37462929
Alignment:
Q  147 cttatgtgttcatggcttcggttttgattctttatccggcgattacaaactcctcagaatatctt 211  Q
    |||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  37462993 cttatgcgttcacggcttcggttttgattctttaaccggcgattacaaactcctcagaatctctt 37462929  T

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Target: scaffold0667 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 144 - 204
Target Start/End: Complemental strand, 4981 - 4921
Alignment:
Q  144 ctccttatgtgttcatggcttcggttttgattctttatccggcgattacaaactcctcaga 204  Q
    ||||||||| ||||| ||||||||||||||| ||||| |||||||||||||| ||||||||    
T  4981 ctccttatgcgttcacggcttcggttttgatcctttaaccggcgattacaaaatcctcaga 4921  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 211
Target Start/End: Original strand, 29452951 - 29453012
Alignment:
Q  150 atgtgttcatggcttcggttttgattctttatccggcgattacaaactcctcagaatatctt 211  Q
    ||||||||| ||||| ||||||||| | |||  || ||||||||||||||||||||| ||||    
T  29452951 atgtgttcacggctttggttttgatccgttaaacgtcgattacaaactcctcagaatctctt 29453012  T

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