View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8951_low_10 (Length: 405)
Name: NF8951_low_10
Description: NF8951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8951_low_10 |
 |  |
|
| [»] scaffold0233 (1 HSPs) |
 |  |  |
|
Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 9 - 329
Target Start/End: Complemental strand, 36118104 - 36117784
Alignment:
| Q |
9 |
gaagcagagacttgacggttgtgtctaacctccattttgcatatggcactttgatattggatgaaaaatcttgggctaatattcgggccatgcgtgctat |
108 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
36118104 |
gaagcagagacttgacggttgtgtctcacctccagtttgcagatgacactttgatattggatgaaaaatcttgggctaatattcgggccatgcatgctat |
36118005 |
T |
 |
| Q |
109 |
tcttcttctctttgaaaaattgttgggttcaaaagtgaatttctctaaaagtcatttagtcggtgtgaatgtcgcaacttcctggttgtttgaagcggcc |
208 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
36118004 |
tcttcttctctttgaaaaatttttgggttcaaaagtgaatttctctaaaagtcatttagtcggtgtgaatgtcgcaacttcctggttgtctgaagcggct |
36117905 |
T |
 |
| Q |
209 |
atggtgttgaattgtaaggtaggttccattccctttgtgtgtttgggtatttttattggtggtaacgcaagacgcttgtctttttgggagccatttatta |
308 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
36117904 |
atggtgttgaattgtaaggtgggttccattccctttgtgtgtttgggtatctttattggtggtaacgcaagacgcttgtctttttgggagccacttatta |
36117805 |
T |
 |
| Q |
309 |
atcgccttaaagctaaactgt |
329 |
Q |
| |
|
|||||||||| |||||||||| |
|
|
| T |
36117804 |
atcgccttaaggctaaactgt |
36117784 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 323 - 389
Target Start/End: Complemental strand, 36099863 - 36099797
Alignment:
| Q |
323 |
aaactgttgggttggaaatcgaaacatttgtctttaggtggtattgtggtgcttctgaagtatgtcc |
389 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
36099863 |
aaactgttgggttggaaatcgaaacatttgtctttaggtggtattgtggtgcttctgaagtctgtcc |
36099797 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 72 - 234
Target Start/End: Complemental strand, 25393883 - 25393721
Alignment:
| Q |
72 |
aaaaatcttgggctaatattcgggccatgcgtgctattcttcttctctttgaaaaattgttgggttcaaaagtgaatttctctaaaagtcatttagtcgg |
171 |
Q |
| |
|
||||||| || |||||||| |||| |||||||||||||||||||| |||||| ||||| ||||| || || ||||| || || |||||||| || || |
|
|
| T |
25393883 |
aaaaatcatgagctaatatctgggctatgcgtgctattcttcttctttttgaagcattgtcgggtttgaaggttaatttttcgaagagtcatttggttgg |
25393784 |
T |
 |
| Q |
172 |
tgtgaatgtcgcaacttcctggttgtttgaagcggccatggtgttgaattgtaaggtaggttc |
234 |
Q |
| |
|
||||||||| | |||| ||||| | ||||||||| |||||| | ||||||||||| ||||| |
|
|
| T |
25393783 |
ggtgaatgtcactgcttcttggttatctgaagcggctatggtgataaattgtaaggttggttc |
25393721 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 84; Significance: 8e-40; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 74 - 345
Target Start/End: Original strand, 38153205 - 38153476
Alignment:
| Q |
74 |
aaatcttgggctaatattcgggccatgcgtgctattcttcttctctttgaaaaattgttgggttcaaaagtgaatttctctaaaagtcatttagtcggtg |
173 |
Q |
| |
|
||||| || ||||||||| || |||||| | |||||||| || | ||||||| |||||||||| ||| |||||||| || |||||||||||||| |||| |
|
|
| T |
38153205 |
aaatcgtgtgctaatattaggtccatgcatactattcttattttttttgaaactttgttgggtttaaaggtgaatttttcgaaaagtcatttagtaggtg |
38153304 |
T |
 |
| Q |
174 |
tgaatgtcgcaacttcctggttgtttgaagcggccatggtgttgaattgtaaggtaggttccattccctttgtgtgtttgggtatttttattggtggtaa |
273 |
Q |
| |
|
||||||| |||| || ||||||| ||||||| |||||| ||||||||||||| ||||||||||||||||||| | |||| | ||||| |||||| |
|
|
| T |
38153305 |
tgaatgttgcaatgtcttggttgtcaaaagcggctatggtgctgaattgtaaggtgggttccattccctttgtgtatatgggcgtgcctattgttggtaa |
38153404 |
T |
 |
| Q |
274 |
cgcaagacgcttgtctttttgggagccatttattaatcgccttaaagctaaactgttgggttggaaatcgaa |
345 |
Q |
| |
|
||| |||||||||| |||||||| || ||||||||||| |||| ||| ||||| ||||| |||||||| |
|
|
| T |
38153405 |
cgctcgacgcttgtccttttgggatccttttattaatcgtattaagactagactgtcaggttgaaaatcgaa |
38153476 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 73 - 364
Target Start/End: Original strand, 20508932 - 20509223
Alignment:
| Q |
73 |
aaaatcttgggctaatattcgggccatgcgtgctattcttcttctctttgaaaaattgttgggttcaaaagtgaatttctctaaaagtcatttagtcggt |
172 |
Q |
| |
|
||||||||||| |||||||| || |||||||| |||||| ||||||||||| ||| ||||| || |||||||| | ||||||| || || ||| |
|
|
| T |
20508932 |
aaaatcttgggtgaatattcgagcaatgcgtgccattctttttctctttgaagccatgtcgggtttgaaggtgaattttttgaaaagtctcttggttggt |
20509031 |
T |
 |
| Q |
173 |
gtgaatgtcgcaacttcctggttgtttgaagcggccatggtgttgaattgtaaggtaggttccattccctttgtgtgtttgggtatttttattggtggta |
272 |
Q |
| |
|
||||||||||| ||||||||||||| ||| ||||| |||||||||||||||||||| ||| | ||||| ||||||| |||||| | ||||||||||| |
|
|
| T |
20509032 |
gtgaatgtcgccacttcctggttgtctgaggcggctatggtgttgaattgtaaggttggtactattccttttgtgtatttggggctgcctattggtggta |
20509131 |
T |
 |
| Q |
273 |
acgcaagacgcttgtctttttgggagccatttattaatcgccttaaagctaaactgttgggttggaaatcgaaacatttgtctttaggtggt |
364 |
Q |
| |
|
| || |||| ||||| |||||||| ||| | ||||| || ||||| ||| |||| ||||||||| ||||||||||| ||||| |||||| |
|
|
| T |
20509132 |
atgctcgacgattgtcgttttgggaaccaatcattaaccgtgttaaatctagactgacgggttggaattcgaaacatttatctttgggtggt |
20509223 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 262 - 388
Target Start/End: Original strand, 9830106 - 9830235
Alignment:
| Q |
262 |
tattggtggtaacgcaagacgcttgtc---tttttgggagccatttattaatcgccttaaagctaaactgttgggttggaaatcgaaacatttgtcttta |
358 |
Q |
| |
|
||||||||| |||||||||||||||| |||||||||||| |||||| ||||||||| |||| ||||| |||||||||||| |||||||||||||| |
|
|
| T |
9830106 |
tattggtggaaacgcaagacgcttgttatttttttgggagcctattattattcgccttaaggctagactgtcgggttggaaatcaaaacatttgtctttg |
9830205 |
T |
 |
| Q |
359 |
ggtggtattgtggtgcttctgaagtatgtc |
388 |
Q |
| |
|
|||||| | |||||||||| |||| |||| |
|
|
| T |
9830206 |
ggtggtcgtctggtgcttctaaagtctgtc |
9830235 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 170 - 273
Target Start/End: Original strand, 5725856 - 5725959
Alignment:
| Q |
170 |
ggtgtgaatgtcgcaacttcctggttgtttgaagcggccatggtgttgaattgtaaggtaggttccattccctttgtgtgtttgggtatttttattggtg |
269 |
Q |
| |
|
||||||||||| || | ||| ||||| | |||||| || ||||||||||| ||||| || ||||||||| ||||||||| | |||| || |||||||| |
|
|
| T |
5725856 |
ggtgtgaatgttgctagttcttggttatctgaagcagcgatggtgttgaactgtaaagttggttccatttcctttgtgtatatgggcatccctattggtg |
5725955 |
T |
 |
| Q |
270 |
gtaa |
273 |
Q |
| |
|
|||| |
|
|
| T |
5725956 |
gtaa |
5725959 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 76; Significance: 5e-35; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 73 - 364
Target Start/End: Complemental strand, 12865058 - 12864767
Alignment:
| Q |
73 |
aaaatcttgggctaatattcgggccatgcgtgctattcttcttctctttgaaaaattgttgggttcaaaagtgaatttctctaaaagtcatttagtcggt |
172 |
Q |
| |
|
|||||||||||| |||||||| || |||||||| ||| || ||||||||||| ||| ||||| || |||||||| || ||||||| || || ||| |
|
|
| T |
12865058 |
aaaatcttgggcgaatattcgagcaatgcgtgccattttttttctctttgaagccatgtcgggtttgaaggtgaatttttcgaaaagtctcttggttggt |
12864959 |
T |
 |
| Q |
173 |
gtgaatgtcgcaacttcctggttgtttgaagcggccatggtgttgaattgtaaggtaggttccattccctttgtgtgtttgggtatttttattggtggta |
272 |
Q |
| |
|
||||||||||| |||||||||||| ||| ||||| |||||||||||||||||||| ||| | ||||| ||||||| |||||| | ||||||||||| |
|
|
| T |
12864958 |
gtgaatgtcgccacttcctggttgactgaggcggctatggtgttgaattgtaaggttggtactattccttttgtgtatttggggctgcctattggtggta |
12864859 |
T |
 |
| Q |
273 |
acgcaagacgcttgtctttttgggagccatttattaatcgccttaaagctaaactgttgggttggaaatcgaaacatttgtctttaggtggt |
364 |
Q |
| |
|
| || |||| |||||||||||||| ||| | ||||| | |||| ||| |||| ||||||||| ||||||||||| ||||| |||||| |
|
|
| T |
12864858 |
atgctcgacgattgtctttttgggaaccaatcattaaatgtattaagtctagactgacgggttggaattcgaaacatttatctttgggtggt |
12864767 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 73 - 364
Target Start/End: Complemental strand, 12833080 - 12832789
Alignment:
| Q |
73 |
aaaatcttgggctaatattcgggccatgcgtgctattcttcttctctttgaaaaattgttgggttcaaaagtgaatttctctaaaagtcatttagtcggt |
172 |
Q |
| |
|
|||||||||||| |||||||| || ||||||| ||| || ||||||||||| ||| ||||| || |||||||| || ||||||| || || ||| |
|
|
| T |
12833080 |
aaaatcttgggcgaatattcgagcagtgcgtgccattttttttctctttgaagccatgtcgggtttgaaggtgaatttttcgaaaagtctcttggttggt |
12832981 |
T |
 |
| Q |
173 |
gtgaatgtcgcaacttcctggttgtttgaagcggccatggtgttgaattgtaaggtaggttccattccctttgtgtgtttgggtatttttattggtggta |
272 |
Q |
| |
|
||||||||||| |||||||||||| ||| ||||| |||||||||||||||||||| | | | ||||| ||||||| |||||| | ||||||||||| |
|
|
| T |
12832980 |
gtgaatgtcgccacttcctggttgactgaggcggctatggtgttgaattgtaaggttgttactattccttttgtgtatttggggctgcctattggtggta |
12832881 |
T |
 |
| Q |
273 |
acgcaagacgcttgtctttttgggagccatttattaatcgccttaaagctaaactgttgggttggaaatcgaaacatttgtctttaggtggt |
364 |
Q |
| |
|
| || |||| |||||||||||||| ||| | ||||| | |||| ||| |||| ||||||||| ||||||||||| ||||| |||||| |
|
|
| T |
12832880 |
atgctcgacgattgtctttttgggaaccaatcattaaatgtattaagtctagactgacgggttggaattcgaaacatttatctttgggtggt |
12832789 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 315 - 363
Target Start/End: Original strand, 25324949 - 25324997
Alignment:
| Q |
315 |
ttaaagctaaactgttgggttggaaatcgaaacatttgtctttaggtgg |
363 |
Q |
| |
|
||||| ||| ||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
25324949 |
ttaaaactagactgtcgggttggaaatcgaaacatttgtctttgggtgg |
25324997 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 248
Target Start/End: Complemental strand, 32019422 - 32019389
Alignment:
| Q |
215 |
ttgaattgtaaggtaggttccattccctttgtgt |
248 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| |
|
|
| T |
32019422 |
ttgaattgtaaggttggttccattccctttgtgt |
32019389 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 77 - 349
Target Start/End: Original strand, 39115983 - 39116254
Alignment:
| Q |
77 |
tcttgggctaatattcgggccatgcgtgctattcttcttctctttgaaaaattgttgggttcaaaagtgaatttctctaaaagtcatttagtcggtgtga |
176 |
Q |
| |
|
||||||||||||||||| || |||| ||| || |||||||| |||||| |||| ||| | ||||||||||| |||||||| | ||| || ||| ||| |
|
|
| T |
39115983 |
tcttgggctaatattcgagcaatgcatgcaatccttcttctttttgaagctttgtcggggttgaaagtgaatttttctaaaagccttttggttggtttga |
39116082 |
T |
 |
| Q |
177 |
atgtcgcaacttcctggttgtttgaagcggccatggtgttgaattgtaaggtaggttccattccctttgtgtgtttgggtatttttattggtggtaacgc |
276 |
Q |
| |
|
||||| | |||| ||||| | | ||||||| |||||||||||||||||||| || || ||||| ||||||| |||||| | ||||||||||||| || |
|
|
| T |
39116083 |
atgtctcctcttcttggttatctaaagcggcaatggtgttgaattgtaaggttggatcaattccttttgtgtatttggggttgcttattggtggtaatgc |
39116182 |
T |
 |
| Q |
277 |
aagacgcttgtctttttgggagccatttattaatcgccttaaagctaaactgttgggttggaaatcgaaacat |
349 |
Q |
| |
|
| || ||||| |||||||| ||| |||||| || ||||| ||| |||| ||||||||| ||||||||| |
|
|
| T |
39116183 |
ccgtcgattgtccttttgggaacca-atattaaccgtattaaatctagactgacgggttggaattcgaaacat |
39116254 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 244
Target Start/End: Original strand, 24738478 - 24738511
Alignment:
| Q |
211 |
ggtgttgaattgtaaggtaggttccattcccttt |
244 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| |
|
|
| T |
24738478 |
ggtgttgaattgtaaggttggttccattcccttt |
24738511 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 325 - 357
Target Start/End: Original strand, 20946802 - 20946834
Alignment:
| Q |
325 |
actgttgggttggaaatcgaaacatttgtcttt |
357 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |
|
|
| T |
20946802 |
actgttgggttggaaatcgaaacatttatcttt |
20946834 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 77 - 349
Target Start/End: Original strand, 27103817 - 27104089
Alignment:
| Q |
77 |
tcttgggctaatattcgggccatgcgtgctattcttcttctctttgaaaaattgttgggttcaaaagtgaatttctctaaaagtcatttagtcggtgtga |
176 |
Q |
| |
|
|||||||||||||||| || ||||| || ||||||||||| |||||| |||| ||||| || |||||||| || ||||||| ||| || ||||||| |
|
|
| T |
27103817 |
tcttgggctaatattcaagcgatgcgagcaattcttcttctttttgaagctttgtcgggtttgaaggtgaatttttcaaaaagtcttttggttggtgtga |
27103916 |
T |
 |
| Q |
177 |
atgtcgcaacttcctggttgtttgaagcggccatggtgttgaattgtaaggtaggttccattccctttgtgtgtttgggtatttttattggtggtaacgc |
276 |
Q |
| |
|
||||| | |||| ||||| | ||||||| | |||||| ||||||||||||| || | ||||| ||||||| |||||| | |||||||||||| || |
|
|
| T |
27103917 |
atgtctcctcttcttggttatctgaagcgacaatggtgctgaattgtaaggttggatatattccttttgtgtatttgggattgcctattggtggtaatgc |
27104016 |
T |
 |
| Q |
277 |
aagacgcttgtctttttgggagccatttattaatcgccttaaagctaaactgttgggttggaaatcgaaacat |
349 |
Q |
| |
|
| || ||||||||||||| ||| ||||||| || ||| | ||| |||| ||||||||| ||||||||| |
|
|
| T |
27104017 |
tcgtcgactgtctttttgggaaccaattattaaacgtattatatctagactgacgggttggaattcgaaacat |
27104089 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 77 - 349
Target Start/End: Original strand, 27145631 - 27145903
Alignment:
| Q |
77 |
tcttgggctaatattcgggccatgcgtgctattcttcttctctttgaaaaattgttgggttcaaaagtgaatttctctaaaagtcatttagtcggtgtga |
176 |
Q |
| |
|
|||||||||||||||| || ||||| || ||||||||||| |||||| |||| ||||| || |||||||| || ||||||| ||| || ||||||| |
|
|
| T |
27145631 |
tcttgggctaatattcaagcgatgcgagcaattcttcttctttttgaagctttgtcgggtttgaaggtgaatttttcaaaaagtcttttggttggtgtga |
27145730 |
T |
 |
| Q |
177 |
atgtcgcaacttcctggttgtttgaagcggccatggtgttgaattgtaaggtaggttccattccctttgtgtgtttgggtatttttattggtggtaacgc |
276 |
Q |
| |
|
||||| | |||| ||||| | ||||||| | |||||| ||||||||||||| || | ||||| ||||||| |||||| | |||||||||||| || |
|
|
| T |
27145731 |
atgtctcctcttcttggttatctgaagcgacaatggtgctgaattgtaaggttggatatattccttttgtgtatttgggattgcctattggtggtaatgc |
27145830 |
T |
 |
| Q |
277 |
aagacgcttgtctttttgggagccatttattaatcgccttaaagctaaactgttgggttggaaatcgaaacat |
349 |
Q |
| |
|
| || ||||||||||||| ||| ||||||| || ||| | ||| |||| ||||||||| ||||||||| |
|
|
| T |
27145831 |
tcgtcgactgtctttttgggaaccaattattaaacgtattatatctagactgacgggttggaattcgaaacat |
27145903 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 200 - 303
Target Start/End: Complemental strand, 34722427 - 34722324
Alignment:
| Q |
200 |
gaagcggccatggtgttgaattgtaaggtaggttccattccctttgtgtgtttgggtatttttattggtggtaacgcaagacgcttgtctttttgggagc |
299 |
Q |
| |
|
||||| || |||||||||||||||||||| |||||||| || ||||||| | |||| || ||||||||||| || || || ||| |||||||||| | |
|
|
| T |
34722427 |
gaagcagctatggtgttgaattgtaaggttggttccatcccttttgtgtatctggggcttcccattggtggtaatgcgaggcggttggctttttgggaac |
34722328 |
T |
 |
| Q |
300 |
catt |
303 |
Q |
| |
|
|||| |
|
|
| T |
34722327 |
catt |
34722324 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0233 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0233
Description:
Target: scaffold0233; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 124
Target Start/End: Original strand, 10493 - 10561
Alignment:
| Q |
56 |
actttgatattggatgaaaaatcttgggctaatattcgggccatgcgtgctattcttcttctctttgaa |
124 |
Q |
| |
|
||||| || |||| ||||||||| ||||||||||||| ||| |||||||| ||| ||||| |||||||| |
|
|
| T |
10493 |
actttaattttgggtgaaaaatcatgggctaatattctggctatgcgtgccatttttcttatctttgaa |
10561 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 170 - 273
Target Start/End: Original strand, 18649626 - 18649729
Alignment:
| Q |
170 |
ggtgtgaatgtcgcaacttcctggttgtttgaagcggccatggtgttgaattgtaaggtaggttccattccctttgtgtgtttgggtatttttattggtg |
269 |
Q |
| |
|
||||||||||| || | ||| ||||| | |||||| || ||||||||||| ||||| || ||||||||| ||||||||| | |||| || |||||||| |
|
|
| T |
18649626 |
ggtgtgaatgttgctagttcttggttatctgaagcagcgatggtgttgaactgtaaagttggttccatttcctttgtgtatatgggcatccctattggtg |
18649725 |
T |
 |
| Q |
270 |
gtaa |
273 |
Q |
| |
|
|||| |
|
|
| T |
18649726 |
gtaa |
18649729 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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