View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8951_low_11 (Length: 371)
Name: NF8951_low_11
Description: NF8951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8951_low_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 23466324 - 23465982
Alignment:
| Q |
1 |
atggctagagtggttgatatgcttgaagggcgtgtgagagtggatgagccaccaggtacaagaatgattcttgttgattttctcagtgttgatgatgata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23466324 |
atggctagagtggttgatatgcttgaagggcgtgtgagagtggatgagccaccaggtacaagaatgattcttgttgattttctcagtgttgatgatgata |
23466225 |
T |
|
| Q |
101 |
atgttacagatagtaataacttgccaaggttggacactatgtctagtcaaggaacacaaagcaatgtggaatgtaattctacctactcttttgctactac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23466224 |
atgttacagatagtaataacttgccaaggttggacactatgtctagtcaaggaacacaaagcaatgtggaatgtaattctacctactcttttgctactac |
23466125 |
T |
|
| Q |
201 |
tgttttctctggaagatagtaattagttgctatactgggcttatgaaaccatgttatttatttatttgattctgctttatgttcttccttttgaaaattg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
23466124 |
tgttttctctggaagatagtaattagttgctatactgggcttatgaaaccgtgttattt----atttgattctgcttcatgttcttcgttttgaaaattg |
23466029 |
T |
|
| Q |
301 |
ctcttctccttctcaaaattgttcattcccagacccatttgggttgg |
347 |
Q |
| |
|
||||||||||| ||||||||||||||| || |||||||||||||||| |
|
|
| T |
23466028 |
ctcttctccttttcaaaattgttcatttccggacccatttgggttgg |
23465982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 330
Target Start/End: Complemental strand, 30481857 - 30481820
Alignment:
| Q |
293 |
gaaaattgctcttctccttctcaaaattgttcattccc |
330 |
Q |
| |
|
||||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
30481857 |
gaaaattgctcttctccctctcaaaattattcattccc |
30481820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 46790092 - 46790159
Alignment:
| Q |
13 |
gttgatatgcttgaagggcgtgtgagagtggatgagccaccaggtacaagaatgattcttgttgattt |
80 |
Q |
| |
|
||||| ||||||||||| |||||||||||||| ||||||||||| || |||||||||||||||||||| |
|
|
| T |
46790092 |
gttgacatgcttgaaggacgtgtgagagtggaggagccaccagggactagaatgattcttgttgattt |
46790159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 168
Target Start/End: Original strand, 38800084 - 38800138
Alignment:
| Q |
114 |
taataacttgccaaggttggacactatgtctagtcaaggaacacaaagcaatgtg |
168 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |||| | |||||| ||||||| |
|
|
| T |
38800084 |
taataacatgccaaggttggacactatgtctaatcaaagggcacaaatcaatgtg |
38800138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University