View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8951_low_12 (Length: 358)
Name: NF8951_low_12
Description: NF8951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8951_low_12 |
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| [»] chr4 (4 HSPs) |
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| [»] chr7 (2 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold0002 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 358
Target Start/End: Complemental strand, 18144986 - 18144629
Alignment:
| Q |
1 |
taataaaaaatggctcggaggtatgttaacgaattggtatactacagaaacgagacttcgtaagttcagggacttgagaacggagcaaaagacagggaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18144986 |
taataaaaaatggctcggaggtatgttaacgaattggtatactacagaaacgagacttcgtaagttcagggacttgagaacggagcaaaagacagggaaa |
18144887 |
T |
|
| Q |
101 |
ctgaactctcttccaaaaagagatgccgctatgttcaagagacaattatctcatttggaaacatatctgggtggcataaaatatatgacagggttacccg |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18144886 |
ctgaactctcttccaaaaagagatgccgctatgttcaagagacaattatctcatttggaaacatatctgggtggcataaaatatatgacagggttacccg |
18144787 |
T |
|
| Q |
201 |
atatagtaataatcgttgatcagcaagaagaatatacggctcttcaagaatgtatcactttgggaattccaacgatttgtttaatcgatacaaattgtga |
300 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18144786 |
atatagtaataatccttgatcagcaagaagaatatacggctcttcaagaatgtatcactttgggaattccaacgatttgtttaatcgatacaaattgtga |
18144687 |
T |
|
| Q |
301 |
cccagatctagcagatatttcgattccagctaatgatgatgctatagcttcaatccga |
358 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18144686 |
cccagatctagcagatatttcgattccagctaatgatgatgctatagcttcaatccga |
18144629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 146 - 358
Target Start/End: Complemental strand, 35113342 - 35113130
Alignment:
| Q |
146 |
ttatctcatttggaaacatatctgggtggcataaaatatatgacagggttacccgatatagtaataatcgttgatcagcaagaagaatatacggctcttc |
245 |
Q |
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|
||||||||||| ||| ||||| ||||||||||||||||||||| |||| |||| |||| |||||||| ||||||||||||||| ||||||||||||||| |
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| T |
35113342 |
ttatctcattttaaaatatatccgggtggcataaaatatatgacggggtcacccaatattgtaataattgttgatcagcaagaaaaatatacggctcttc |
35113243 |
T |
|
| Q |
246 |
aagaatgtatcactttgggaattccaacgatttgtttaatcgatacaaattgtgacccagatctagcagatatttcgattccagctaatgatgatgctat |
345 |
Q |
| |
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| ||||||||||||| |||||||||| ||||||||||||| || |||||| ||||||| |||||| ||||||||||||||||| |||||||||||||| |
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| T |
35113242 |
gaaaatgtatcactttaggaattccaatgatttgtttaatcaatccaaattatgacccatatctaggtgatatttcgattccagcaaatgatgatgctat |
35113143 |
T |
|
| Q |
346 |
agcttcaatccga |
358 |
Q |
| |
|
||||||||||||| |
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| T |
35113142 |
agcttcaatccga |
35113130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 272 - 355
Target Start/End: Complemental strand, 8185533 - 8185450
Alignment:
| Q |
272 |
acgatttgtttaatcgatacaaattgtgacccagatctagcagatatttcgattccagctaatgatgatgctatagcttcaatc |
355 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8185533 |
acgatttgtttaatcgatacaaattgtgacccagatctagcagatatttcgattccagctaatgatgatgctatagcttcaatc |
8185450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 16537761 - 16537809
Alignment:
| Q |
1 |
taataaaaaatggctcggaggtatgttaacgaattggtatactacagaa |
49 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
16537761 |
taataaaaaatggcttggaggtatgttaacgaattggtatactacagaa |
16537809 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 5 - 358
Target Start/End: Complemental strand, 48190227 - 48189874
Alignment:
| Q |
5 |
aaaaaatggctcggaggtatgttaacgaattggtatactacagaaacgagacttcgtaagttcagggacttgagaacggagcaaaagacagggaaactga |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
48190227 |
aaaaaatggctcggaggtatgttaacgaattggtatactacagaaacgagacttcgtaagttcagggacttgacaacggagcaaaagacagggaaactga |
48190128 |
T |
|
| Q |
105 |
actctcttccaaaaagagatgccgctatgttcaagagacaattatctcatttggaaacatatctgggtggcataaaatatatgacagggttacccgatat |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
48190127 |
tctctcttccaaaaagagatgccgctatgttcaagagacaattatctcatttggaaacatatctgggtggcataaaatatatgatagggttacccgatat |
48190028 |
T |
|
| Q |
205 |
agtaataatcgttgatcagcaagaagaatatacggctcttcaagaatgtatcactttgggaattccaacgatttgtttaatcgatacaaattgtgaccca |
304 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||| ||||||||||||||||||| |
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| T |
48190027 |
agtaataatcgttgatcagcaagaagaatatacggctcttcaagaatgtatcactttgggaattcaaatgacttgtttaagcgatacaaattgtgaccca |
48189928 |
T |
|
| Q |
305 |
gatctagcagatatttcgattccagctaatgatgatgctatagcttcaatccga |
358 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |
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|
| T |
48189927 |
gatctagcagatatttcgattccagctaatgatgatgttatggcttcaatccga |
48189874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 303 - 358
Target Start/End: Original strand, 3505726 - 3505781
Alignment:
| Q |
303 |
cagatctagcagatatttcgattccagctaatgatgatgctatagcttcaatccga |
358 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3505726 |
cagatctagcagatatttcgattccagctaatgatgatgctatagcttcaatccga |
3505781 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 131; Significance: 7e-68; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 219 - 353
Target Start/End: Complemental strand, 9292840 - 9292706
Alignment:
| Q |
219 |
atcagcaagaagaatatacggctcttcaagaatgtatcactttgggaattccaacgatttgtttaatcgatacaaattgtgacccagatctagcagatat |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9292840 |
atcagcaagaagaatatacggctcttcaagaatgtatcactttgggaattccaatgatttgtttaatcgatacaaattgtgacccagatctagcagatat |
9292741 |
T |
|
| Q |
319 |
ttcgattccagctaatgatgatgctatagcttcaa |
353 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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|
| T |
9292740 |
ttcgattccagctaatgatgatgctatagcttcaa |
9292706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 282 - 356
Target Start/End: Original strand, 16914002 - 16914076
Alignment:
| Q |
282 |
taatcgatacaaattgtgacccagatctagcagatatttcgattccagctaatgatgatgctatagcttcaatcc |
356 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |
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|
| T |
16914002 |
taatcgatacaaattgtaacccagatctagcagatatttcgatttcagctaatgataatgctatagcttcaatcc |
16914076 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 123; Significance: 4e-63; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 26053367 - 26053241
Alignment:
| Q |
1 |
taataaaaaatggctcggaggtatgttaacgaattggtatactacagaaacgagacttcgtaagttcagggacttgagaacggagcaaaagacagggaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26053367 |
taataaaaaatggctcggaggtatgttaacgaattggtatactatagaaacgagacttcgtaagttcagggacttgagaacggagcaaaagacagggaaa |
26053268 |
T |
|
| Q |
101 |
ctgaactctcttccaaaaagagatgcc |
127 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
26053267 |
ctgaactctcttccaaaaagagatgcc |
26053241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 99; Significance: 8e-49; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 240 - 358
Target Start/End: Complemental strand, 22644576 - 22644458
Alignment:
| Q |
240 |
ctcttcaagaatgtatcactttgggaattccaacgatttgtttaatcgatacaaattgtgacccagatctagcagatatttcgattccagctaatgatga |
339 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
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|
| T |
22644576 |
ctcttcaagaatgtatcactttggaaattccaacaatttgtttaatcgatacaaattgtgacccagatttagcagatatttcgattccaactaatgatga |
22644477 |
T |
|
| Q |
340 |
tgctatagcttcaatccga |
358 |
Q |
| |
|
|| |||||||||||||||| |
|
|
| T |
22644476 |
tgttatagcttcaatccga |
22644458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 102 - 168
Target Start/End: Complemental strand, 3575117 - 3575051
Alignment:
| Q |
102 |
tgaactctcttccaaaaagagatgccgctatgttcaagagacaattatctcatttggaaacatatct |
168 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3575117 |
tgaactctcttccaaaaagagatgccgctatgttcaagagacaattatctcatttggaaacatatct |
3575051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 306 - 358
Target Start/End: Complemental strand, 3575054 - 3575002
Alignment:
| Q |
306 |
atctagcagatatttcgattccagctaatgatgatgctatagcttcaatccga |
358 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3575054 |
atctagcagatatttcgattccagctaatgatgatgctatagcttcaatccga |
3575002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 216 - 339
Target Start/End: Original strand, 230569 - 230692
Alignment:
| Q |
216 |
ttgatcagcaagaagaatatacggctcttcaagaatgtatcactttgggaattccaacgatttgtttaatcgatacaaattgtgacccagatctagcaga |
315 |
Q |
| |
|
||||||||||| |||| |||| ||||||| |||||| || |||||||||||| || |||| |||| ||||||||||||||||||| ||||| || | |
|
|
| T |
230569 |
ttgatcagcaaaaagagtatatagctcttcgggaatgtgccattttgggaattcctactatttctttagtcgatacaaattgtgacccggatctcgcgaa |
230668 |
T |
|
| Q |
316 |
tatttcgattccagctaatgatga |
339 |
Q |
| |
|
||| ||||||||||| || ||||| |
|
|
| T |
230669 |
tatatcgattccagccaacgatga |
230692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 230354 - 230391
Alignment:
| Q |
1 |
taataaaaaatggctcggaggtatgttaacgaattggt |
38 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
230354 |
taataaaaaatggctcggtggtatgttaacgaattggt |
230391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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