View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8951_low_16 (Length: 345)
Name: NF8951_low_16
Description: NF8951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8951_low_16 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 16160998 - 16160659
Alignment:
| Q |
1 |
aaagagacacacaacataaaaattcaaaaggaacaacataagagggagtccatatctccaaacaaaatgaagcaaacaacaacaaacatagacacaatgg |
100 |
Q |
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| T |
16160998 |
aaagagacacacaacataaaaattcaaaaggaacaacataagagggagtccacatctccaaacaaaatgaagcaaacaacaacaaacatagacacaatgg |
16160899 |
T |
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| Q |
101 |
ttcaattgatgcactaatgcagccattattacaaacgataactcagacagttcgacaaccaaccactacgttcaaccctttctaatccttccatatttct |
200 |
Q |
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| T |
16160898 |
ttcaattgatgcactaatgcagccattactacaaacgataactcagacagttcgacaaccaaccactgcgttcaaccctttctaatccttccatatttct |
16160799 |
T |
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| Q |
201 |
aggcaagagtctcatcatcagagtcaacttcaacaaaggcagaagaaagatttcttttgacaccagatccattagccttgaaagcagattcatgttcagc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |
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| T |
16160798 |
gggcaagagtctcatcatcagagtcaacttcaacaaaggcagaagaaagatttcttttggcaccagatccat-----ttgaaagcagattcatgttcagc |
16160704 |
T |
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| Q |
301 |
accaaaggccaaggaagtactctcaacagaaccggcaacaccaaa |
345 |
Q |
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||||| ||||||||||||||||||| ||||||||||||||||||| |
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| T |
16160703 |
accaacggccaaggaagtactctcagcagaaccggcaacaccaaa |
16160659 |
T |
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