View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8951_low_18 (Length: 303)

Name: NF8951_low_18
Description: NF8951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8951_low_18
NF8951_low_18
[»] chr5 (2 HSPs)
chr5 (1-294)||(28532162-28532453)
chr5 (5-62)||(29021373-29021430)
[»] chr6 (4 HSPs)
chr6 (6-291)||(6588694-6588974)
chr6 (235-293)||(6416418-6416476)
chr6 (239-290)||(8913659-8913710)
chr6 (235-293)||(6594189-6594247)
[»] chr4 (6 HSPs)
chr4 (6-293)||(21833749-21834028)
chr4 (5-135)||(53761227-53761357)
chr4 (21-56)||(1601088-1601123)
chr4 (96-191)||(3438105-3438200)
chr4 (85-166)||(547490-547571)
chr4 (96-193)||(55908183-55908280)
[»] chr3 (2 HSPs)
chr3 (10-191)||(51763815-51763996)
chr3 (235-293)||(13470321-13470379)
[»] chr1 (1 HSPs)
chr1 (6-186)||(19467870-19468050)
[»] chr7 (4 HSPs)
chr7 (235-293)||(10615045-10615103)
chr7 (5-123)||(10615207-10615325)
chr7 (5-192)||(10169500-10169687)
chr7 (5-192)||(10177025-10177212)


Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 28532453 - 28532162
Alignment:
Q  1 catgacttcacatattattgactcattggtgagtttcaagggtttgacttgtcttggtttgtattattttaatatttctgatgagttgctctacactatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28532453 catgacttcacatattattgactcattggtgagtttcaagggtttgacttgtcttggtttgtattattttaatatttctgatgagttgctctacactatt 28532354  T
Q  101 gcaaggggaggtcttcctttgacaaagcttgtcctaaaaaattgctggggctatagttatgatggactcttttgtttgttatccaattgt---cgtcaag 197  Q
    |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||   |||||||    
T  28532353 gcaaggggaggtcttcctttgataaagcttgtcctaaaaaatcgctggggctatagttatgacggactcttttgtttgttatccaagtgtcgacgtcaag 28532254  T
Q  198 gtttccgacatttgtatattatattggacttagtaaatttctgaatgatcaacatgttatccagttgtcttcgtttcttggtgatttgatgtccatc 294  Q
    ||||||||||||||     ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28532253 gtttccgacatttg-----tatattggacttagtaagtttctgaatgatcaacatgttatccagttgtcttcgtttcttggtgatttgatgtccatc 28532162  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 29021430 - 29021373
Alignment:
Q  5 acttcacatattattgactcattggtgagtttcaagggtttgacttgtcttggtttgt 62  Q
    ||||||||| | |||||||  |||||||||||||||||||| |||||||||| |||||    
T  29021430 acttcacatttcattgacttgttggtgagtttcaagggtttaacttgtcttgatttgt 29021373  T

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Target: chr6 (Bit Score: 82; Significance: 1e-38; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 6 - 291
Target Start/End: Original strand, 6588694 - 6588974
Alignment:
Q  6 cttcacatattattgactcattggtgagtttcaagggtttgacttgtcttggtttgtattattttaatatttctgatgagttgctctacactattgcaag 105  Q
    |||||||| | |||||||||||||||||||| ||| ||||||||||||||||||||| |  ||| ||||| || ||||||||||||||||||||||||||    
T  6588694 cttcacatttaattgactcattggtgagtttgaagagtttgacttgtcttggtttgtctgctttgaatatctccgatgagttgctctacactattgcaag 6588793  T
Q  106 gggaggtcttcctttgacaaagcttgtcctaaaaaattgctggggctatagttatgatggactcttttgtttgttatccaattgtcgtcaaggtttccga 205  Q
    |  | |||||||||||||||  ||||| || ||| |||| |  |||  |  |||| |||||||||||| |||||||||||  |||| | || |||||| |    
T  6588794 gaaacgtcttcctttgacaagacttgtactcaaatattgttctggccgttattataatggactcttttatttgttatccatgtgtcataaaagtttccaa 6588893  T
Q  206 catttgtatattatattggacttagtaaatttctgaatgatcaacatgttatccagttgtcttcgtttcttggtgatttgatgtcc 291  Q
    ||||||      || ||| |  || ||  ||||||||||||||||||||| || | |||||||| ||||||||||||||| |||||    
T  6588894 catttg-----gatcttgaagataataggtttctgaatgatcaacatgttgtcgaattgtcttcctttcttggtgatttggtgtcc 6588974  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 293
Target Start/End: Complemental strand, 6416476 - 6416418
Alignment:
Q  235 tttctgaatgatcaacatgttatccagttgtcttcgtttcttggtgatttgatgtccat 293  Q
    ||||| ||||||||||||||| |||| |||||| |||||||| ||| ||||||||||||    
T  6416476 tttcttaatgatcaacatgttgtccaattgtctccgtttcttagtggtttgatgtccat 6416418  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 290
Target Start/End: Original strand, 8913659 - 8913710
Alignment:
Q  239 tgaatgatcaacatgttatccagttgtcttcgtttcttggtgatttgatgtc 290  Q
    ||||||||||||||||| || ||||||||| |||||||||| ||||| ||||    
T  8913659 tgaatgatcaacatgttgtcaagttgtctttgtttcttggtaatttggtgtc 8913710  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 293
Target Start/End: Original strand, 6594189 - 6594247
Alignment:
Q  235 tttctgaatgatcaacatgttatccagttgtcttcgtttcttggtgatttgatgtccat 293  Q
    |||||||||||||||||||||  | ||||||||| |||||||| || ||||| ||||||    
T  6594189 tttctgaatgatcaacatgttgccgagttgtctttgtttcttgctggtttgaagtccat 6594247  T

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Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 6 - 293
Target Start/End: Original strand, 21833749 - 21834028
Alignment:
Q  6 cttcacatattattgactcattggtgagtttcaagggtttgacttgtcttggtttgtattattttaatatttctgatgagttgctctacactattgcaag 105  Q
    ||||| || |||||| |||||| |||||||| |||||||||||||||||| |||||  || |||  |||| |  |||||||| |||||| ||||||||||    
T  21833749 cttcatattttattggctcattagtgagtttgaagggtttgacttgtcttagtttgcgttctttgtatatcttggatgagttactctactctattgcaag 21833848  T
Q  106 gggaggtcttcctttgacaaagcttgtcctaaaaaattgctggggctatagttatgatggactcttttgtttgttatccaattgtcgtcaaggtttccga 205  Q
    || |||||||||||| || | |||||||||   ||| |||   |||||||||||||||||| |||||||||||||||||||     |||| ||| ||| |    
T  21833849 ggaaggtcttcctttaacgaggcttgtccttcgaaaatgcaccggctatagttatgatggaatcttttgtttgttatccaa---aggtcatggtgtccaa 21833945  T
Q  206 catttgtatattatattggacttagtaaatttctgaatgatcaacatgttatccagttgtcttcgtttcttggtgatttgatgtccat 293  Q
    ||||||      || ||| |  ||  |  ||||||||||||||||||||| ||||||||| ||| ||||||||||||||||| |||||    
T  21833946 catttg-----gatcttgaagataacatgtttctgaatgatcaacatgttgtccagttgtattcatttcttggtgatttgatttccat 21834028  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 135
Target Start/End: Original strand, 53761227 - 53761357
Alignment:
Q  5 acttcacatattattgactcattggtgagtttcaagggtttgacttgtcttggtttgtattattttaatatttctgatgagttgctctacactattgcaa 104  Q
    |||||| || ||||| | || ||||||||||| ||||||||||||| ||||  |||| |  ||||    ||||| ||| ||||||||||| |||||||||    
T  53761227 acttcagattttattaagtcgttggtgagtttgaagggtttgacttctcttaatttgcagcatttaggaatttcagataagttgctctactctattgcaa 53761326  T
Q  105 ggggaggtcttcctttgacaaagcttgtcct 135  Q
     || | |||||||||||||||  ||||||||    
T  53761327 aggaatgtcttcctttgacaagtcttgtcct 53761357  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 56
Target Start/End: Complemental strand, 1601123 - 1601088
Alignment:
Q  21 actcattggtgagtttcaagggtttgacttgtcttg 56  Q
    |||||||||||||||| |||||||||||||||||||    
T  1601123 actcattggtgagtttgaagggtttgacttgtcttg 1601088  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 96 - 191
Target Start/End: Original strand, 3438105 - 3438200
Alignment:
Q  96 ctattgcaaggggaggtcttcctttgacaaagcttgtcctaaaaaattgctggggctatagttatgatggactcttttgtttgttatccaattgtc 191  Q
    |||||||||  |||||||||||||||| || |||||||||  | ||||||   ||||||||||||| || | |||||| | |||||||||| ||||    
T  3438105 ctattgcaattggaggtcttcctttgagaaggcttgtcctccacaattgcaccggctatagttatgctgaaatcttttctctgttatccaagtgtc 3438200  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 166
Target Start/End: Complemental strand, 547571 - 547490
Alignment:
Q  85 gttgctctacactattgcaaggggaggtcttcctttgacaaagcttgtcctaaaaaattgctggggctatagttatgatgga 166  Q
    |||||||| | ||||||||| || || | ||||||||| ||||||||||||  ||||||| |  ||||||||||||| ||||    
T  547571 gttgctctcctctattgcaatggaagctattcctttgagaaagcttgtcctccaaaattgtttcggctatagttatgctgga 547490  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 193
Target Start/End: Original strand, 55908183 - 55908280
Alignment:
Q  96 ctattgcaaggggaggtcttcctttgacaaagcttgtcctaaaaaattgctggggctatagttatgatggactcttttgtttgttatccaattgtcgt 193  Q
    ||||||||| ||||||||||||||||| ||  ||||||||  ||||||||   ||||||| ||||| |||| | |  | |||||||||||| ||||||    
T  55908183 ctattgcaatgggaggtcttcctttgagaagacttgtcctccaaaattgcaccggctataattatgttggaatatactctttgttatccaagtgtcgt 55908280  T

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Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 10 - 191
Target Start/End: Original strand, 51763815 - 51763996
Alignment:
Q  10 acatattattgactcattggtgagtttcaagggtttgacttgtcttggtttgtattattttaatatttctgatgagttgctctacactattgcaagggga 109  Q
    |||| ||||||| || ||||||||||| ||||||||||||| ||||| |||| |   ||| || || |||||||||||||||||| | |||||||||| |    
T  51763815 acattttattgattcgttggtgagtttgaagggtttgacttctcttgatttgaagcgtttgaaaatctctgatgagttgctctactcgattgcaagggaa 51763914  T
Q  110 ggtcttcctttgacaaagcttgtcctaaaaaattgctggggctatagttatgatggactcttttgtttgttatccaattgtc 191  Q
    ||||||| ||||| || |||||||||  ||| ||||  |||||||||||||| |||| || |||||||| ||||||| ||||    
T  51763915 ggtcttcttttgaaaaggcttgtccttcaaatttgcacgggctatagttatgctggaatcatttgtttggtatccaactgtc 51763996  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 235 - 293
Target Start/End: Original strand, 13470321 - 13470379
Alignment:
Q  235 tttctgaatgatcaacatgttatccagttgtcttcgtttcttggtgatttgatgtccat 293  Q
    ||||||||||||||||||||| |||| ||||||||||||||| ||| ||||||||||||    
T  13470321 tttctgaatgatcaacatgttctccaattgtcttcgtttcttagtggtttgatgtccat 13470379  T

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Target: chr1 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 6 - 186
Target Start/End: Original strand, 19467870 - 19468050
Alignment:
Q  6 cttcacatattattgactcattggtgagtttcaagggtttgacttgtcttggtttgtattattttaatatttctgatgagttgctctacactattgcaag 105  Q
    |||| ||| |||||||||||||| ||||||| ||||||||||||| ||||  || ||  | | | ||||| ||||||||  |||||||| |||||||| |    
T  19467870 cttcgcattttattgactcattgctgagtttgaagggtttgacttctcttacttggtggtttctgaatatctctgatgaaatgctctactctattgcacg 19467969  T
Q  106 gggaggtcttcctttgacaaagcttgtcctaaaaaattgctggggctatagttatgatggactcttttgtttgttatccaa 186  Q
    || ||| || |||||||| | ||||||||| ||| ||||||  ||| |||| |||| |||| |||||||||||||||||||    
T  19467970 ggaagggctacctttgacgaggcttgtcctcaaatattgctttggccatagctatgctggaatcttttgtttgttatccaa 19468050  T

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Target: chr7 (Bit Score: 47; Significance: 7e-18; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 235 - 293
Target Start/End: Complemental strand, 10615103 - 10615045
Alignment:
Q  235 tttctgaatgatcaacatgttatccagttgtcttcgtttcttggtgatttgatgtccat 293  Q
    ||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||    
T  10615103 tttctgaatgatcaacatgttgtccaattgtcttcatttcttggtgatttgatgtccat 10615045  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 123
Target Start/End: Complemental strand, 10615325 - 10615207
Alignment:
Q  5 acttcacatattattgactcattggtgagtttcaagggtttgacttgtcttggtttgtattattttaatatttctgatgagttgctctacactattgcaa 104  Q
    ||||||||| |||||||||||||||||||||| ||||| ||||||||||||| |||| | | | | ||||| ||  || | ||| | ||| |||||||||    
T  10615325 acttcacattttattgactcattggtgagtttgaagggcttgacttgtcttgatttgcagtttatgaatatctcaaataacttgttttactctattgcaa 10615226  T
Q  105 ggggaggtcttcctttgac 123  Q
    |||  ||||||||||||||    
T  10615225 gggtgggtcttcctttgac 10615207  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 5 - 192
Target Start/End: Original strand, 10169500 - 10169687
Alignment:
Q  5 acttcacatattattgactcattggtgagtttcaagggtttgacttgtcttggtttgtattattttaatatttctgatgagttgctctacactattgcaa 104  Q
    |||||| || ||||||||||  |||||||||| ||||||||||||| ||||  ||||   | | |  |||| ||||||||  |||||||| ||||||| |    
T  10169500 acttcagattttattgactcgctggtgagtttgaagggtttgacttctctttctttgagatctctggatatctctgatgaaatgctctactctattgcga 10169599  T
Q  105 ggggaggtcttcctttgacaaagcttgtcctaaaaaattgctggggctatagttatgatggactcttttgtttgttatccaattgtcg 192  Q
    ||| |||||| |||||||| | ||||| ||| | | |||||| || ||| || |||| |||| |||||||||||| ||| || |||||    
T  10169600 gggaaggtctacctttgacgaggcttgccctcagatattgcttggactaaagctatgctggaatcttttgtttgtcatctaagtgtcg 10169687  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 5 - 192
Target Start/End: Original strand, 10177025 - 10177212
Alignment:
Q  5 acttcacatattattgactcattggtgagtttcaagggtttgacttgtcttggtttgtattattttaatatttctgatgagttgctctacactattgcaa 104  Q
    |||||| || ||||||||||  |||||||||| ||||||||||||| ||||  ||||   | | |  |||| ||||||||  |||||||| ||||||| |    
T  10177025 acttcagattttattgactcgctggtgagtttgaagggtttgacttctctttctttgagatctctggatatctctgatgaaatgctctactctattgcga 10177124  T
Q  105 ggggaggtcttcctttgacaaagcttgtcctaaaaaattgctggggctatagttatgatggactcttttgtttgttatccaattgtcg 192  Q
    ||| |||||| |||||||| | ||||| ||| | | |||||| || ||| || |||| |||| |||||||||||| ||| || |||||    
T  10177125 gggaaggtctacctttgacgaggcttgccctcagatattgcttggactaaagctatgctggaatcttttgtttgtcatctaagtgtcg 10177212  T

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