View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8951_low_19 (Length: 274)
Name: NF8951_low_19
Description: NF8951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8951_low_19 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 32050378 - 32050636
Alignment:
| Q |
1 |
gaggatcacactcctagatccttgctaatttctaatgttaacgatcgatttgatattttcgatctctaaatcggtcactatatatgacatgacattgttt |
100 |
Q |
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| T |
32050378 |
gaggatcacactcccaaatctttgctaatttctaatgttaacgattgatttgatattttcgatctctaaatcggtcactatatatgacatgac------- |
32050470 |
T |
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| Q |
101 |
ttgtagttacataggttttgagttttgactactctttttgcctttcaattaatgtgattatgtgatataatgagacagggaaatacaaagaaaatggact |
200 |
Q |
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| T |
32050471 |
------ttacataggttttgagttttgactactcattttgcctttcaattaatgtgattatgtgatataacgagacagggaaatacaaagaaaatggac- |
32050563 |
T |
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| Q |
201 |
atacacatgcagaaagacttcatcatagtacacttctttacaaagacacaagaagtgaaagaaatcattcattc |
274 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32050564 |
-tacacatgcagaaagacttcatcatagtacacttctttacaaagacacaagaagtgaaagaaatcattcattc |
32050636 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 82
Target Start/End: Original strand, 15671922 - 15671971
Alignment:
| Q |
32 |
ctaatgttaacgatcgatttgatattttcgatctctaaatcggtcactata |
82 |
Q |
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|||||||||||||| ||||||| ||||| ||||||||||||||||| |||| |
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| T |
15671922 |
ctaatgttaacgattgatttgacatttt-gatctctaaatcggtcattata |
15671971 |
T |
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