View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8951_low_20 (Length: 268)
Name: NF8951_low_20
Description: NF8951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8951_low_20 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 23 - 254
Target Start/End: Complemental strand, 44247464 - 44247230
Alignment:
| Q |
23 |
agaaagagcatctaaccttatcaatcattttgtaagattcggcactcttggcaacaacaccagccaacacttgagaaggaacattatcaaccaaccattt |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44247464 |
agaaagagcatctaaccttatcaatcattttgtaagattcggcactcttggcaacaacaccagccaacacttgagaaggaacattatcaaccaaccattt |
44247365 |
T |
|
| Q |
123 |
aggccaaccatccaccatctcatcatcaaaacacctattcaactgcttcttactatctttcaactcaccatctctttttcctcttgcaccacc---attg |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
44247364 |
aggccaaccatccaccatctcatcatcaaaacacctattcaactgcttcttactatctttcaactcaccatctctctttcctcttgcaccaccaatattg |
44247265 |
T |
|
| Q |
220 |
ccatcaactactttatgctttctgggttgtctctg |
254 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
44247264 |
ccatcaactactttatgctttctgggttgtctctg |
44247230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University