View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8951_low_25 (Length: 237)
Name: NF8951_low_25
Description: NF8951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8951_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 38625390 - 38625456
Alignment:
| Q |
20 |
aggcttgaagaatcgcgtgatattattgccaaataccccgatcgaatccccgtaagtcccatcaatc |
86 |
Q |
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| T |
38625390 |
aggcttgaagaatcgcgtgatattattgccaaataccccgatcgaatccccgtaagtcccatcaatc |
38625456 |
T |
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Target: chr1; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 157 - 220
Target Start/End: Original strand, 38625527 - 38625590
Alignment:
| Q |
157 |
aggtgattgtagaaaagtataccaaatgcgatctgcctcatttggagaagaaaaagtaagacta |
220 |
Q |
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| T |
38625527 |
aggtgattgtagaaaagtataccaaatgcgatctgcctcatttggagaagaaaaagtaagacta |
38625590 |
T |
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