View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8951_low_26 (Length: 237)

Name: NF8951_low_26
Description: NF8951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8951_low_26
NF8951_low_26
[»] chr4 (4 HSPs)
chr4 (152-215)||(39114546-39114609)
chr4 (18-79)||(39114923-39114983)
chr4 (18-61)||(20291867-20291909)
chr4 (21-65)||(32645582-32645625)
[»] chr5 (1 HSPs)
chr5 (18-61)||(1249192-1249235)
[»] chr3 (2 HSPs)
chr3 (18-61)||(55121259-55121301)
chr3 (17-61)||(8380452-8380495)
[»] chr8 (2 HSPs)
chr8 (17-61)||(24185544-24185588)
chr8 (21-65)||(27789291-27789335)
[»] chr1 (1 HSPs)
chr1 (23-63)||(25554554-25554593)


Alignment Details
Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 152 - 215
Target Start/End: Complemental strand, 39114609 - 39114546
Alignment:
Q  152 tcccaatgccaaaaacatacttctcaatgtcccaattcactcactttggaattcttttaatgag 215  Q
    ||||||||||||| || ||||||||||| ||||||||||||||||||| ||||||| |||||||    
T  39114609 tcccaatgccaaagacctacttctcaatatcccaattcactcactttgcaattcttataatgag 39114546  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 39114983 - 39114923
Alignment:
Q  18 attaattattcaataaatctaaaaaagttattttttgcttataataataatcataaagagta 79  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||||| |||  ||||||||    
T  39114983 attagttattcaataaatctaaaaaagttatttttt-cttataataatgatcggaaagagta 39114923  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 20291867 - 20291909
Alignment:
Q  18 attaattattcaataaatctaaaaaagttattttttgcttataa 61  Q
    |||| ||||||||||||||||||| |||||||||||||||||||    
T  20291867 attagttattcaataaatctaaaa-agttattttttgcttataa 20291909  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 32645582 - 32645625
Alignment:
Q  21 aattattcaataaatctaaaaaagttattttttgcttataataat 65  Q
    ||||||||||| ||||||||| | |||||||||||||||||||||    
T  32645582 aattattcaatgaatctaaaaca-ttattttttgcttataataat 32645625  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 1249192 - 1249235
Alignment:
Q  18 attaattattcaataaatctaaaaaagttattttttgcttataa 61  Q
    |||| ||||||||||||||||||||| || ||||||||||||||    
T  1249192 attagttattcaataaatctaaaaaaattgttttttgcttataa 1249235  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 55121259 - 55121301
Alignment:
Q  18 attaattattcaataaatctaaaaaagttattttttgcttataa 61  Q
    |||||||||| ||||||||||||| |||||||||||||||||||    
T  55121259 attaattatttaataaatctaaaa-agttattttttgcttataa 55121301  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 8380495 - 8380452
Alignment:
Q  17 tattaattattcaataaatctaaaaaagttattttttgcttataa 61  Q
    |||||||||||||||||| |||||||| |||| ||||||||||||    
T  8380495 tattaattattcaataaacctaaaaaa-ttatgttttgcttataa 8380452  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 24185588 - 24185544
Alignment:
Q  17 tattaattattcaataaatctaaaaaagttattttttgcttataa 61  Q
    |||||||||||||||  |||||||||| | |||||||||||||||    
T  24185588 tattaattattcaatgtatctaaaaaaatcattttttgcttataa 24185544  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 27789335 - 27789291
Alignment:
Q  21 aattattcaataaatctaaaaaagttattttttgcttataataat 65  Q
    ||||||||||| |||| ||||||||| | ||||||||||||||||    
T  27789335 aattattcaatgaatcaaaaaaagttttgttttgcttataataat 27789291  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 63
Target Start/End: Complemental strand, 25554593 - 25554554
Alignment:
Q  23 ttattcaataaatctaaaaaagttattttttgcttataata 63  Q
    ||||||||| |||||||||| ||||||||||||||||||||    
T  25554593 ttattcaatgaatctaaaaa-gttattttttgcttataata 25554554  T

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