View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8951_low_29 (Length: 229)
Name: NF8951_low_29
Description: NF8951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8951_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 168; Significance: 3e-90; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 36946604 - 36946815
Alignment:
| Q |
1 |
ctaatctttcatcaagtatgcctggaccaacataccttgagggccctttgaattcattcactgctcttctattgtcnnnnnnnn-cacaaactcttctgt |
99 |
Q |
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| T |
36946604 |
ctaatctttcatcaagtatgcctggaccaacataccttgagggccctttgaattcattcgctgctattctattgtcaaaaaaaaacacaaactcttctgt |
36946703 |
T |
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| Q |
100 |
gtttactactacaacttctaaggatgtttctccctctatgtcacttctctattctagataaaattaattttattttaattaatccatatatctttctttc |
199 |
Q |
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| T |
36946704 |
gtttactactacaacttctgaggatgtttctccctctatgtcacttctctattctagataaaattaattttattttaattaatccatatatctttctttc |
36946803 |
T |
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| Q |
200 |
tttcttttgaac |
211 |
Q |
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|||||||||||| |
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| T |
36946804 |
tttcttttgaac |
36946815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 36941341 - 36941276
Alignment:
| Q |
1 |
ctaatctttcatcaagtatgcctggaccaacataccttgagggccctttgaattcattcactgctc |
66 |
Q |
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| T |
36941341 |
ctaatcttccatcaagtatgcctgtaccaacatatcttgatggccctttgaattcattcactgctc |
36941276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 103 - 170
Target Start/End: Complemental strand, 36941193 - 36941126
Alignment:
| Q |
103 |
tactactacaacttctaaggatgtttctccctctatgtcacttctctattctagataaaattaatttt |
170 |
Q |
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| T |
36941193 |
tactacaactacttctaatgatgtttctccttctatgtgacttatgtattctagataaaattaatttt |
36941126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 36939783 - 36939831
Alignment:
| Q |
1 |
ctaatctttcatcaagtatgcctggaccaacataccttgagggcccttt |
49 |
Q |
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|||||||||||||||||||||||| ||||||||| |||||||| ||||| |
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| T |
36939783 |
ctaatctttcatcaagtatgcctgtaccaacatatcttgaggggccttt |
36939831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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