View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8951_low_3 (Length: 471)
Name: NF8951_low_3
Description: NF8951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8951_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 10 - 431
Target Start/End: Complemental strand, 35519611 - 35519194
Alignment:
| Q |
10 |
tttggtgttcaaccaaaaattgctgtagctgatcagcagacaatgctgatccgccattggcgaattcggaaaaaacttccttgacatcagatggtggtaa |
109 |
Q |
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| T |
35519611 |
tttgatgttcaaccaaaaattgccgtagctgatcagcagacaatgctgatccgccgttggagaattcggaaaaaacttccttgacatcagatggtggtaa |
35519512 |
T |
|
| Q |
110 |
ttgttcttgttcggagaatgagatatttctgttgaaacatttgaacattttgtaacgtagttgaatgtgttgaatatgattgaaggtgcttatgtaacgg |
209 |
Q |
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| T |
35519511 |
ttgttcttgttcggagaatgagatatttctgttgaaacgtttgaacattttgtaacgcagttgaatgtgttgaatatgattttaggtgcttatgtaacgg |
35519412 |
T |
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| Q |
210 |
ttttggtttgctacgaaaacggtaatatagagaagaagtaagaaaatgaatggatgaatgaaatgtttgcggttaaagcgggatatgtattggtcgttac |
309 |
Q |
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| T |
35519411 |
ttttggtttgctacgaaaacggtaatatagagaagaagtaagaaaatgaatggatgaatgaaatgtttgcggttgaagcgggatatgtattggtcgttac |
35519312 |
T |
|
| Q |
310 |
tttttctttctttcctagttgattgaagaatgaagtgtgttgaatactttttctcttataaattttgtacctaagaaagggaaagagannnnnnncttca |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
35519311 |
tttttctttctttcctagttgattgaagaatgaagtgtgttgaatactttttctcttataaattttgtacctaaga----gaaagagatttttttcttca |
35519216 |
T |
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| Q |
410 |
acatgataaaggatataatttg |
431 |
Q |
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|||||||||||||||||||||| |
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| T |
35519215 |
acatgataaaggatataatttg |
35519194 |
T |
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