View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8951_low_30 (Length: 217)
Name: NF8951_low_30
Description: NF8951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8951_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 5644169 - 5644369
Alignment:
| Q |
1 |
ttaaaataaaaacataattatcaacatcaaatcaaagatacaaacccctaaaacacaattttcaacgtaaagtcaaataaaataaacttgaaaacataat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||| |
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| T |
5644169 |
ttaaaataaaaacataattatcaacatcaaatcaaagatacaaacccctaaaacacaattttcaacgtaaaatcaaataaaataaactttaaaacacaat |
5644268 |
T |
|
| Q |
101 |
tttatcaacaataaatgtgataaaaataggaaccttaacataagcattatcattcagcttatatataaccccatcaacattcacttcacggtaatgaaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5644269 |
tttatcaacaataaatgtgataaaaataggaaccttaacataagcattatcattcagcttatatataaccccatcaacattcacttcacggtaatgaaac |
5644368 |
T |
|
| Q |
201 |
t |
201 |
Q |
| |
|
| |
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|
| T |
5644369 |
t |
5644369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 9e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 93 - 201
Target Start/End: Original strand, 35535369 - 35535477
Alignment:
| Q |
93 |
aacataattttatcaacaataaatgtgataaaaataggaaccttaacataagcattatcattcagcttatatataaccccatcaacattcacttcacggt |
192 |
Q |
| |
|
|||| ||||||||||||| |||||| |||||||||| |||||| ||||||||||||| || ||| |||||||||||||||||||| ||| ||||||||| |
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| T |
35535369 |
aacacaattttatcaacattaaatgatataaaaatagaaaccttgacataagcattattatccagattatatataaccccatcaactttcgcttcacggt |
35535468 |
T |
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| Q |
193 |
aatgaaact |
201 |
Q |
| |
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||||||||| |
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| T |
35535469 |
aatgaaact |
35535477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 122 - 201
Target Start/End: Original strand, 31944085 - 31944164
Alignment:
| Q |
122 |
aaaaataggaaccttaacataagcattatcattcagcttatatataaccccatcaacattcacttcacggtaatgaaact |
201 |
Q |
| |
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|||||||| |||||| |||||||||||||| | ||||||||| | || ||||||||| ||| |||||||||| ||||||| |
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| T |
31944085 |
aaaaatagaaaccttgacataagcattatcgtccagcttatacaaaatcccatcaactttcgcttcacggtagtgaaact |
31944164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 125 - 201
Target Start/End: Original strand, 9394576 - 9394652
Alignment:
| Q |
125 |
aataggaaccttaacataagcattatcattcagcttatatataaccccatcaacattcacttcacggtaatgaaact |
201 |
Q |
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||||| |||||| |||||||||||||| | ||||||||||| || ||||||||| || |||||||||| ||||||| |
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| T |
9394576 |
aatagaaaccttgacataagcattatcctccagcttatataaaatcccatcaaccttggcttcacggtagtgaaact |
9394652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 123 - 201
Target Start/End: Original strand, 1342115 - 1342193
Alignment:
| Q |
123 |
aaaataggaaccttaacataagcattatcattcagcttatatataaccccatcaacattcacttcacggtaatgaaact |
201 |
Q |
| |
|
||||||| |||||| |||||||||||||| | ||||||||||| || ||||||||| ||| ||||| | || ||||||| |
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| T |
1342115 |
aaaatagaaaccttgacataagcattatcctccagcttatataaaatcccatcaaccttcgcttcatgatagtgaaact |
1342193 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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