View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8951_low_6 (Length: 422)

Name: NF8951_low_6
Description: NF8951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8951_low_6
NF8951_low_6
[»] chr5 (3 HSPs)
chr5 (7-270)||(28532766-28533029)
chr5 (268-386)||(28533069-28533187)
chr5 (56-101)||(41900503-41900548)
[»] chr3 (3 HSPs)
chr3 (276-386)||(51763081-51763191)
chr3 (54-112)||(51763388-51763446)
chr3 (55-112)||(51113195-51113252)
[»] chr6 (12 HSPs)
chr6 (270-344)||(6587982-6588056)
chr6 (54-112)||(6593929-6593987)
chr6 (142-239)||(6588144-6588241)
chr6 (56-112)||(6423907-6423963)
chr6 (58-111)||(6410699-6410752)
chr6 (354-400)||(14810035-14810081)
chr6 (58-112)||(19633104-19633158)
chr6 (54-111)||(6417092-6417149)
chr6 (55-104)||(6596241-6596290)
chr6 (72-113)||(7132323-7132364)
chr6 (72-113)||(7135246-7135287)
chr6 (72-113)||(7138169-7138210)
[»] chr4 (5 HSPs)
chr4 (54-113)||(553759-553818)
chr4 (353-400)||(1537252-1537299)
chr4 (54-109)||(21833278-21833333)
chr4 (307-404)||(53759964-53760058)
chr4 (348-400)||(1547374-1547426)
[»] chr7 (8 HSPs)
chr7 (54-113)||(10615713-10615772)
chr7 (351-400)||(15091285-15091334)
chr7 (53-113)||(10169047-10169107)
chr7 (53-113)||(10176572-10176632)
chr7 (1-38)||(10169137-10169174)
chr7 (1-38)||(10176662-10176699)
chr7 (360-404)||(10167233-10167277)
chr7 (368-400)||(10616213-10616245)
[»] chr8 (2 HSPs)
chr8 (55-99)||(32151969-32152013)
chr8 (63-111)||(34935986-34936034)
[»] chr1 (2 HSPs)
chr1 (54-118)||(7555198-7555262)
chr1 (56-113)||(19467428-19467485)


Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 7 - 270
Target Start/End: Original strand, 28532766 - 28533029
Alignment:
Q  7 tcgagcaaagggaaacattctgcgataagaaataggttaacaaagccggaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatc 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28532766 tcgagcaaagggaaacattctgcgataagaaataggttaacaaagccggaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatc 28532865  T
Q  107 catttgctgggaagcggttaccaacgtttgggagtttgagtgaagtgaatttgaacgacgagaaacgagagatttggcagagaaggtcgtcgaggttgtg 206  Q
    ||||||||||||||||||||||||||||||| |||||||||||| ||| |||||| |||| ||||   |||||||||||||||||||||||||||||||     
T  28532866 catttgctgggaagcggttaccaacgtttggaagtttgagtgaaatgattttgaatgacgggaaatctgagatttggcagagaaggtcgtcgaggttgtt 28532965  T
Q  207 accgagatagcgagagagattgagggaattgagatgggtgaaccttttgaagaggctacgtagg 270  Q
    ||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||    
T  28532966 acctagatagcgagagagatcgaggaaattgagatgggtgaaccttttgaagaggctaagtagg 28533029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 268 - 386
Target Start/End: Original strand, 28533069 - 28533187
Alignment:
Q  268 aggcggccggtgatggagaggaaccgtttggatacggtggagagagaactcaagctgcgacggttgttgttttcgtccataccgtcgttgatgatgaatc 367  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  28533069 aggcgtccggtgatggagaggaaccgtttggatacggtggagagagaactcaagttgcgacggttgttgttttcgtccataccgtcgttgatgatgaatc 28533168  T
Q  368 tgaatatacattcccaaca 386  Q
    |||| ||||||||||||||    
T  28533169 tgaagatacattcccaaca 28533187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 101
Target Start/End: Complemental strand, 41900548 - 41900503
Alignment:
Q  56 aacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcg 101  Q
    ||||||||| |||||||||||||||||| ||||  |||||||||||    
T  41900548 aacaagtgagagaggtcaaagttgtaatctttttggaaaaagctcg 41900503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 276 - 386
Target Start/End: Complemental strand, 51763191 - 51763081
Alignment:
Q  276 ggtgatggagaggaaccgtttggatacggtggagagagaactcaagctgcgacggttgttgttttcgtccataccgtcgttgatgatgaatctgaatata 375  Q
    |||||||||||||||| ||||||| ||| ||||||||||| ||||| ||||||||||||| | ||||||   | | | ||||||||||||| |||| |||    
T  51763191 ggtgatggagaggaactgtttggaaacgatggagagagaattcaagttgcgacggttgttttcttcgtcatcatcattgttgatgatgaatttgaagata 51763092  T
Q  376 cattcccaaca 386  Q
     ||||||||||    
T  51763091 gattcccaaca 51763081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 54 - 112
Target Start/End: Complemental strand, 51763446 - 51763388
Alignment:
Q  54 ggaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccatttg 112  Q
    ||||||||||| ||| |||||||||||||| |||||||||||| ||||||| |||||||    
T  51763446 ggaacaagtgagagatgtcaaagttgtaatcttttgtgaaaaaactcgcaacccatttg 51763388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 55 - 112
Target Start/End: Complemental strand, 51113252 - 51113195
Alignment:
Q  55 gaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccatttg 112  Q
    |||||||||| |||||||| ||||||||| ||||  || |||||||||||||||||||    
T  51113252 gaacaagtgagagaggtcagagttgtaatattttccgagaaagctcgcaatccatttg 51113195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 270 - 344
Target Start/End: Complemental strand, 6588056 - 6587982
Alignment:
Q  270 gcggccggtgatggagaggaaccgtttggatacggtggagagagaactcaagctgcgacggttgttgttttcgtc 344  Q
    |||| ||||||||| ||||||| | |||||||||| |||||||||| ||| |||| |||||||||||||||||||    
T  6588056 gcggtcggtgatggcgaggaactgcttggatacggcggagagagaaatcatgctgtgacggttgttgttttcgtc 6587982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 54 - 112
Target Start/End: Complemental strand, 6593987 - 6593929
Alignment:
Q  54 ggaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccatttg 112  Q
    ||||||| |||||||||||||||||||||| |||||||| ||| ||||||| |||||||    
T  6593987 ggaacaattgaaagaggtcaaagttgtaatcttttgtgagaaaactcgcaaaccatttg 6593929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 239
Target Start/End: Complemental strand, 6588241 - 6588144
Alignment:
Q  142 ttgagtgaagtgaatttgaacgacgagaaacgagagatttggcagagaaggtcgtcgaggttgtgaccgagatagcgagagagattgagggaattgag 239  Q
    ||||||||||||| ||| || |  | |||||||||||||||||| ||||||||||||||||  | ||||  ||| || ||||||||||||||| ||||    
T  6588241 ttgagtgaagtgattttcaatgttgggaaacgagagatttggcaaagaaggtcgtcgaggtcataaccgctatatcgcgagagattgagggaagtgag 6588144  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 56 - 112
Target Start/End: Original strand, 6423907 - 6423963
Alignment:
Q  56 aacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccatttg 112  Q
    ||||||||| ||||||||||||||| |||||||| || ||||||||||| |||||||    
T  6423907 aacaagtgagagaggtcaaagttgttatgttttgggagaaagctcgcaacccatttg 6423963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 58 - 111
Target Start/End: Original strand, 6410699 - 6410752
Alignment:
Q  58 caagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccattt 111  Q
    |||||||||||||||||||||||||||||||| || ||| || |||| ||||||    
T  6410699 caagtgaaagaggtcaaagttgtaatgttttgggagaaaacttgcaacccattt 6410752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 354 - 400
Target Start/End: Original strand, 14810035 - 14810081
Alignment:
Q  354 gttgatgatgaatctgaatatacattcccaacactcatcaggtaaat 400  Q
    ||||||||||||||| || | || |||||||||||||||||||||||    
T  14810035 gttgatgatgaatctaaagacacgttcccaacactcatcaggtaaat 14810081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 112
Target Start/End: Original strand, 19633104 - 19633158
Alignment:
Q  58 caagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccatttg 112  Q
    ||||||| ||||||||||||||||||| |||  || ||||||||||| |||||||    
T  19633104 caagtgagagaggtcaaagttgtaatgctttcggagaaagctcgcaacccatttg 19633158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 111
Target Start/End: Original strand, 6417092 - 6417149
Alignment:
Q  54 ggaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccattt 111  Q
    ||||||||||| |||||||||||||||| | ||||| || |||||||| || ||||||    
T  6417092 ggaacaagtgagagaggtcaaagttgtattcttttgggagaaagctcgtaacccattt 6417149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 104
Target Start/End: Complemental strand, 6596290 - 6596241
Alignment:
Q  55 gaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaa 104  Q
    |||||||||| ||||||||||||||| |||||||| || ||| |||||||    
T  6596290 gaacaagtgagagaggtcaaagttgttatgttttgggagaaaactcgcaa 6596241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 113
Target Start/End: Original strand, 7132323 - 7132364
Alignment:
Q  72 caaagttgtaatgttttgtgaaaaagctcgcaatccatttgc 113  Q
    |||||||||||||||||| || ||||||||||| ||||||||    
T  7132323 caaagttgtaatgttttgggagaaagctcgcaacccatttgc 7132364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 113
Target Start/End: Original strand, 7135246 - 7135287
Alignment:
Q  72 caaagttgtaatgttttgtgaaaaagctcgcaatccatttgc 113  Q
    |||||||||||||||||| || ||||||||||| ||||||||    
T  7135246 caaagttgtaatgttttgggagaaagctcgcaacccatttgc 7135287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 113
Target Start/End: Original strand, 7138169 - 7138210
Alignment:
Q  72 caaagttgtaatgttttgtgaaaaagctcgcaatccatttgc 113  Q
    |||||||||||||||||| || ||||||||||| ||||||||    
T  7138169 caaagttgtaatgttttgggagaaagctcgcaacccatttgc 7138210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 54 - 113
Target Start/End: Original strand, 553759 - 553818
Alignment:
Q  54 ggaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccatttgc 113  Q
    |||||| |||| |||||||||||||||||||||||| || ||||||||||| ||||||||    
T  553759 ggaacaggtgagagaggtcaaagttgtaatgttttgggagaaagctcgcaacccatttgc 553818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 353 - 400
Target Start/End: Complemental strand, 1537299 - 1537252
Alignment:
Q  353 cgttgatgatgaatctgaatatacattcccaacactcatcaggtaaat 400  Q
    ||||| ||| ||||||||||| ||||||||||||||||||||||||||    
T  1537299 cgttgttgaggaatctgaatacacattcccaacactcatcaggtaaat 1537252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 54 - 109
Target Start/End: Complemental strand, 21833333 - 21833278
Alignment:
Q  54 ggaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccat 109  Q
    ||||||||||| |||||||||||| ||||||||||||| |||| ||||||| ||||    
T  21833333 ggaacaagtgagagaggtcaaagtagtaatgttttgtgcaaaaactcgcaacccat 21833278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 307 - 404
Target Start/End: Complemental strand, 53760058 - 53759964
Alignment:
Q  307 gagagagaactcaagctgcgacggttgttgttttcgtccataccgtcgttgatgatgaatctgaatatacattcccaacactcatcaggtaaatctga 404  Q
    ||||||||| ||||| || ||||||||||||||| |||| |   || |||||||| || | |||| ||| ||||||| ||||||||||||||||||||    
T  53760058 gagagagaattcaagttgtgacggttgttgtttttgtcctt---gttgttgatgacgagtttgaagatagattcccagcactcatcaggtaaatctga 53759964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 348 - 400
Target Start/End: Complemental strand, 1547426 - 1547374
Alignment:
Q  348 accgtcgttgatgatgaatctgaatatacattcccaacactcatcaggtaaat 400  Q
    ||||||| ||||||||||| |||| ||| ||||||||||||| ||||||||||    
T  1547426 accgtcgatgatgatgaatttgaagatagattcccaacactcgtcaggtaaat 1547374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 54 - 113
Target Start/End: Original strand, 10615713 - 10615772
Alignment:
Q  54 ggaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccatttgc 113  Q
    ||||||||||| |||||||||||||||||| ||||| || |||||||| || ||||||||    
T  10615713 ggaacaagtgagagaggtcaaagttgtaatcttttgggagaaagctcgtaacccatttgc 10615772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 351 - 400
Target Start/End: Complemental strand, 15091334 - 15091285
Alignment:
Q  351 gtcgttgatgatgaatctgaatatacattcccaacactcatcaggtaaat 400  Q
    ||||||||||||||||||||| |  ||||||||||||||||| |||||||    
T  15091334 gtcgttgatgatgaatctgaagacgcattcccaacactcatcgggtaaat 15091285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 113
Target Start/End: Complemental strand, 10169107 - 10169047
Alignment:
Q  53 cggaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccatttgc 113  Q
    |||||||||||| ||||||||||||| |||| ||||| || ||| ||||||| ||||||||    
T  10169107 cggaacaagtgagagaggtcaaagttctaatattttgagagaaaactcgcaacccatttgc 10169047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 113
Target Start/End: Complemental strand, 10176632 - 10176572
Alignment:
Q  53 cggaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccatttgc 113  Q
    |||||||||||| ||||||||||||| |||| ||||| || ||| ||||||| ||||||||    
T  10176632 cggaacaagtgagagaggtcaaagttctaatattttgagagaaaactcgcaacccatttgc 10176572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 10169174 - 10169137
Alignment:
Q  1 agttcttcgagcaaagggaaacattctgcgataagaaa 38  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  10169174 agttcttcaagcaaaggaaaacattctgcgataagaaa 10169137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 10176699 - 10176662
Alignment:
Q  1 agttcttcgagcaaagggaaacattctgcgataagaaa 38  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  10176699 agttcttcaagcaaaggaaaacattctgcgataagaaa 10176662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 404
Target Start/End: Complemental strand, 10167277 - 10167233
Alignment:
Q  360 gatgaatctgaatatacattcccaacactcatcaggtaaatctga 404  Q
    |||||||||||||||  |||||||||| || ||||||||||||||    
T  10167277 gatgaatctgaatatcaattcccaacattcgtcaggtaaatctga 10167233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 400
Target Start/End: Original strand, 10616213 - 10616245
Alignment:
Q  368 tgaatatacattcccaacactcatcaggtaaat 400  Q
    |||| ||||||||||||||||||||||||||||    
T  10616213 tgaagatacattcccaacactcatcaggtaaat 10616245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 99
Target Start/End: Original strand, 32151969 - 32152013
Alignment:
Q  55 gaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagct 99  Q
    |||||||||| |||||||||||||||||||||||| || ||||||    
T  32151969 gaacaagtgagagaggtcaaagttgtaatgttttgggagaaagct 32152013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 34936034 - 34935986
Alignment:
Q  63 gaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccattt 111  Q
    |||||| |||||||||||||| |||||||| ||| ||||||| ||||||    
T  34936034 gaaagatgtcaaagttgtaatattttgtgagaaaactcgcaaaccattt 34935986  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 118
Target Start/End: Original strand, 7555198 - 7555262
Alignment:
Q  54 ggaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccatttgctggga 118  Q
    |||||||||||  ||||| ||||||||||| ||||| || ||||||||||||||| |||| ||||    
T  7555198 ggaacaagtgagtgaggttaaagttgtaatattttgggagaaagctcgcaatccaattgcaggga 7555262  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 113
Target Start/End: Complemental strand, 19467485 - 19467428
Alignment:
Q  56 aacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccatttgc 113  Q
    ||||||||| |||||||||||||||||| ||||| |  ||| ||||||| ||||||||    
T  19467485 aacaagtgagagaggtcaaagttgtaatattttgagtgaaaactcgcaacccatttgc 19467428  T

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