View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8951_low_7 (Length: 407)
Name: NF8951_low_7
Description: NF8951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8951_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 42117257 - 42117579
Alignment:
| Q |
1 |
gtgagcaattgaagagacctattgagaaatcttaatacacaaggggtaaaattatgtcatgtaatgttgggctcatagatagctaataggtacaagttat |
100 |
Q |
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| T |
42117257 |
gtgagcaattgaagggacctattgagaaatcttaatacacaaggggtaaagttatgtcatgtaatgttgggctcatagatagctaataggtacaagtaat |
42117356 |
T |
|
| Q |
101 |
gggttgctctgctatcacaatttatccacttattcttcttcccttcatcctgtttatctcaacctctcatcttcaaaggtgaaccaacaaagctgcaaac |
200 |
Q |
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| T |
42117357 |
gggttgctctgctatcacaatttatccacttattcttcttcccttcatcctgtttatctcaacctctcatcttcaaaggtgaaccaacaaagctgcaaac |
42117456 |
T |
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| Q |
201 |
tctttaaaccaagccatatatgattaggtcgatctcctctacatcaattatagtcttcaatgctttagaccttgtctcttcttcactatataagcctctt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42117457 |
tctttaaaccaagccatatatgattaggtcgatctcctctacatcaattatagtcttcaatgctttagaccttgtctcttcttcactatataagcctctt |
42117556 |
T |
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| Q |
301 |
ttacataacatgaacaaaacaaa |
323 |
Q |
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||||||||||||||||||||||| |
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| T |
42117557 |
ttacataacatgaacaaaacaaa |
42117579 |
T |
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