View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8952_high_10 (Length: 402)
Name: NF8952_high_10
Description: NF8952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8952_high_10 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 402
Target Start/End: Original strand, 26614393 - 26614793
Alignment:
| Q |
1 |
caaatcaaactataatttcacttgaaaacaaataattgcaaattttcagtcttataactctaaaacccagatatgttagtattaaaggtgtcatgtatat |
100 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26614393 |
caaatcaaactgtaatttcacttgaaaacaaataattgcaaattttcagtcttataactctaaaacccagatatgttagtattaaaggtgtcatgtatat |
26614492 |
T |
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| Q |
101 |
ccaagtacatattgtctatcaaaagctggcataatttgcgtaccacaaacatgagcaatcatgtatgtcaagagcgcataagatgcaatattaaagggca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26614493 |
ccaagtacatattgtctatcaaaagctggcataatttgcgtaccacaaacatgagcaatcatgtatgtcaagagcgcataagatgcaatattaaagggca |
26614592 |
T |
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| Q |
201 |
cacccagacccatgtcagcagatcgttgatacatttgacatgataactctccatttgccacatagaactgcataagaaaaagaggatgtagagaaaattt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
26614593 |
cacccagacccatgtcagcagatcgttgatacatttgacatgataactctccatttgccacatagaactgcataagaaaaagaggatgtagag-aaattt |
26614691 |
T |
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| Q |
301 |
taaaatagatatacacttacacacacgcatacagagttttaaagagaaagccaaatatagctgcagacctgcgcaaacatgtggcaggggggaagtgcca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26614692 |
taaaatagatatacacttacacacacgcatacagagttttaaagagaaagccaaatatagctgcagacctgcgcaaacatgtggcaggggggaagtgcca |
26614791 |
T |
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| Q |
401 |
tt |
402 |
Q |
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|| |
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| T |
26614792 |
tt |
26614793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 91; Significance: 6e-44; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 134 - 272
Target Start/End: Original strand, 5316269 - 5316407
Alignment:
| Q |
134 |
atttgcgtaccacaaacatgagcaatcatgtatgtcaagagcgcataagatgcaatattaaagggcacacccagacccatgtcagcagatcgttgataca |
233 |
Q |
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|||||| ||||||||| ||||||||||||| |||||| ||| |||||||| ||||| ||||| ||||||||||| ||||||||||||||||| ||||||| |
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| T |
5316269 |
atttgcataccacaaatatgagcaatcatgcatgtcaggagggcataagaagcaatgttaaatggcacacccaggcccatgtcagcagatcgctgataca |
5316368 |
T |
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| Q |
234 |
tttgacatgataactctccatttgccacatagaactgca |
272 |
Q |
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| T |
5316369 |
tttgacatgataactccccatttgctacatagaactgca |
5316407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 401
Target Start/End: Original strand, 5316481 - 5316541
Alignment:
| Q |
341 |
aaagagaaagccaaatatagctgcagacctgcgcaaacatgtggcaggggggaagtgccat |
401 |
Q |
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| T |
5316481 |
aaagagaaaccaaaataaagttgcatacctgtgcaaacatgtggcagggtggaagagccat |
5316541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 6e-44; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 134 - 272
Target Start/End: Original strand, 54757588 - 54757726
Alignment:
| Q |
134 |
atttgcgtaccacaaacatgagcaatcatgtatgtcaagagcgcataagatgcaatattaaagggcacacccagacccatgtcagcagatcgttgataca |
233 |
Q |
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|||||| ||||||||| ||||||||||||| |||||| ||| |||||||| ||||| ||||| ||||||||||| ||||||||||||||||| ||||||| |
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| T |
54757588 |
atttgcataccacaaatatgagcaatcatgcatgtcaggagggcataagaagcaatgttaaatggcacacccaggcccatgtcagcagatcgctgataca |
54757687 |
T |
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| Q |
234 |
tttgacatgataactctccatttgccacatagaactgca |
272 |
Q |
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| T |
54757688 |
tttgacatgataactccccatttgctacatagaactgca |
54757726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 401
Target Start/End: Original strand, 54757800 - 54757860
Alignment:
| Q |
341 |
aaagagaaagccaaatatagctgcagacctgcgcaaacatgtggcaggggggaagtgccat |
401 |
Q |
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||||||||| | ||||| || |||| ||||| ||||||||||||||||| ||||| ||||| |
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| T |
54757800 |
aaagagaaaccaaaataaagttgcatacctgtgcaaacatgtggcagggtggaagagccat |
54757860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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