View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8952_high_16 (Length: 346)
Name: NF8952_high_16
Description: NF8952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8952_high_16 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 14085609 - 14085281
Alignment:
| Q |
1 |
ctgttatttattttgnnnnnnnagacacatggaaagtggtactgccagtgtgaatcctttgcctcaaattccaattctagttgctagaactcaaggagtc |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14085609 |
ctgttatttattttgtttttttagacacatggaaagtggtactgccagtgtgaatcctttgcctcaaattccaattctagttgctagaactcaaggagtc |
14085510 |
T |
|
| Q |
101 |
tcgaggctgctgagttactgcgaggccaaggacatgaacatgctgagttagtgctaaaactaaagaaaagaaaacatgatagacatccttcaatggcttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14085509 |
tcgaggctgctgagttactgcgaggccaaggacatgaacatgttgagttagtgctaaaactaaagaaaagaaaacatgatagacatccttcaatggcttg |
14085410 |
T |
|
| Q |
201 |
gagacattttacgaagaaaagagacgcatacgccacattttgtaacttctgttttgcttcttttgcgtcaaatagttctagccatcgaactaacaacatg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
14085409 |
gagacattttacgaagaaaagagacgcatacgccgaattttgtaacttctgttttgcttcttttgcgtcaaatagttctagccatcaaactaacaacatg |
14085310 |
T |
|
| Q |
301 |
cttaaacatatgaatgtttgtccaaaaac |
329 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
14085309 |
cttaaacatatgaatgtttgtccaaaaac |
14085281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 123 - 329
Target Start/End: Original strand, 12189888 - 12190088
Alignment:
| Q |
123 |
aggccaaggacatgaacatgctgagttagtgctaaaactaaagaaaagaaaacatgatagacatccttcaatggcttggagacattttacgaagaaaaga |
222 |
Q |
| |
|
||||||||||| |||||||||| || ||||||||||||||||||||||||||| || ||||| ||||||||||| |||||||||||||| |||||||| | |
|
|
| T |
12189888 |
aggccaaggacctgaacatgctaaggtagtgctaaaactaaagaaaagaaaacctgctagacctccttcaatggtttggagacattttatgaagaaaaaa |
12189987 |
T |
|
| Q |
223 |
gacgcatacgccacattttgtaacttctgttttgcttcttttgcgtcaaatagttctagccatcgaactaacaacatgcttaaacatatgaatgtttgtc |
322 |
Q |
| |
|
||| | ||| |||||||||| || || ||||||||| |||||| ||| | ||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
12189988 |
gacac---tgcc---ttttgtaactattgcttcacttcttttgtttcaaatgcttccaaccatcgaactaacaacatgcttaaacacatgatgatttgtc |
12190081 |
T |
|
| Q |
323 |
caaaaac |
329 |
Q |
| |
|
||||||| |
|
|
| T |
12190082 |
caaaaac |
12190088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 23 - 81
Target Start/End: Original strand, 12189826 - 12189884
Alignment:
| Q |
23 |
agacacatggaaagtggtactgccagtgtgaatcctttgcctcaaattccaattctagt |
81 |
Q |
| |
|
||||||||| ||| || |||||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
12189826 |
agacacatgaaaactgatactgctagtgtgaatcctttggctcaaattccaattctagt |
12189884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University