View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8952_high_22 (Length: 250)
Name: NF8952_high_22
Description: NF8952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8952_high_22 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 21650988 - 21650747
Alignment:
| Q |
1 |
tttcagctataggtacattaaaagaatgtccaaagcctgaagataagttaatctgaaaaattcaagaaatcaaaattgcaaggaagtacattaaaagagg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21650988 |
tttcagctataggtacattaaaagaatgtccaaagcctgaagataagttaatctgaaaaattcaagaaatcaaaattgcaaggaagtacattaaaagagg |
21650889 |
T |
|
| Q |
101 |
atgttaaattctttatacaacattgatgattcaaaaggtgcaaaatattaccttagtcaaatgcaaaggtggaatggaaataccaataaaaactccaaag |
200 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21650888 |
atgttaaattctccatacaacattgatgattcaaaaggtgcaaaatattaccttagtcaaatgcaaaggtggaatggaaataccaataaaaactccaaag |
21650789 |
T |
|
| Q |
201 |
gcaattgccataattgttgtaatgatagccttggtaccacca |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21650788 |
gcaattgccataattgttgtaatgatagccttggtaccacca |
21650747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University