View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8952_high_28 (Length: 218)
Name: NF8952_high_28
Description: NF8952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8952_high_28 |
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Alignment Details
Target: chr6 (Bit Score: 138; Significance: 3e-72; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 12 - 200
Target Start/End: Complemental strand, 1955796 - 1955607
Alignment:
| Q |
12 |
taataagttata-tgttggttcaaaaatattttggcatactctttgattggtggtggagatttgttttctcctggggtggcagatatatctctcaaatgc |
110 |
Q |
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| T |
1955796 |
taataagttataatattggtgtaaaaatattttggcatactctttgatcagtggtggagatttgttttgtcctggggtggcagatatgtctctcaaatgc |
1955697 |
T |
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| Q |
111 |
aaagaatcaggtaggagtgcatgcatcctatagacagtgacaaattcttcagttagagaatatggaacaccatgattatttggtcttttc |
200 |
Q |
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| T |
1955696 |
aaagaatcaggtaggagtgcatgcatcctatagacagtcacaaattcttcagttagagagtatggaacaccatgattatctggttttttc |
1955607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 91 - 194
Target Start/End: Complemental strand, 1926888 - 1926785
Alignment:
| Q |
91 |
cagatatatctctcaaatgcaaagaatcaggtaggagtgcatgcatcctatagacagtgacaaattcttcagttagagaatatggaacaccatgattatt |
190 |
Q |
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| T |
1926888 |
cagatatgtccctcaaatgcagagaattgggtaggagttgatgcatcctatagacactcacaaattcctcagttaaagaatatggaacaccatgattttt |
1926789 |
T |
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| Q |
191 |
tggt |
194 |
Q |
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|||| |
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| T |
1926788 |
tggt |
1926785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 36 - 187
Target Start/End: Complemental strand, 1941039 - 1940888
Alignment:
| Q |
36 |
aatattttggcatactctttgattggtggtggagatttgttttctcctggggtggcagatatatctctcaaatgcaaagaatcaggtaggagtgcatgca |
135 |
Q |
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| T |
1941039 |
aatatattgtcatactctttgattaatggcggagatttgttaggcccaggagaggcagatgtgtctctcaagtgcaggaaatcaggcaggagtggatgca |
1940940 |
T |
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| Q |
136 |
tcctatagacagtgacaaattcttcagttagagaatatggaacaccatgatt |
187 |
Q |
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| T |
1940939 |
ttctatagacactagcaaattcctcagttaaagagtatggaacaccatgatt |
1940888 |
T |
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