View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8952_high_4 (Length: 582)
Name: NF8952_high_4
Description: NF8952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8952_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 508; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 6 - 564
Target Start/End: Original strand, 42243294 - 42243851
Alignment:
| Q |
6 |
ggtagattatactccaattattgtcattcaactaatgatatcatggcagatgaaatatttaggttggattgtcaactaatgttacatacaaaattggcaa |
105 |
Q |
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| T |
42243294 |
ggtatattatactccaattattgtcattcaactaatgatatcatggcagatgaaatatttaggttggattgtcaactaatgttacatacaaaattggcaa |
42243393 |
T |
|
| Q |
106 |
aaggcaggaattgatatttctgtttggatctactgatatgtatctgttacaaccacaaattcaaatcatttaaacacacatgtaaaattacacattattt |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42243394 |
aaggcaggaattgatatttctgtttggatctactgatatgtatctgttacaaccacaaattcaaatcatttaaacacacatgtaaaattacacattattt |
42243493 |
T |
|
| Q |
206 |
aattagttcaatagtgaaaaaatttgactattcatttcgaacnnnnnnnncttctcttctatttgtggtttgtaattacacaagttttgctcatataagc |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
42243494 |
aattagttcaatagtgaaaaaatttgactattcatttcgaacttttttt--ttctcttctatttgtggtttgtgattacacaagttttgctcatataagc |
42243591 |
T |
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| Q |
306 |
atcttaaaccacactagcttccattgccaacaaaaatatctagtaactacagtacccatatctcacattctcattaccaaatatttcacatgtttaagca |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42243592 |
atcttaaaccacactagcttccattgccaacaaaaatatctagtaactacagtacccatatctcacattctcattaccaaatatttcacatgtttaagca |
42243691 |
T |
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| Q |
406 |
actaacgaacacaacacattctaagcttcattttggattgcaacgcatcaaaattattaaggcttaattggattttgatctatgtcttaaaacttatata |
505 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42243692 |
actaacgaacacaacacattctaagcttcattttggattgcaacgcatcaaaattattaaggcttaattggattttgatctatgtcttaaaacttatata |
42243791 |
T |
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| Q |
506 |
gcctaactcaaaatctataaaaactggc-ttttaaggttagaacgactccgacttatatg |
564 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |
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| T |
42243792 |
gcctaactcaaaatctataaaaactggctttttaaggttagaacgactccaacttatatg |
42243851 |
T |
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