View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8952_high_8 (Length: 525)
Name: NF8952_high_8
Description: NF8952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8952_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 434; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 7 - 508
Target Start/End: Complemental strand, 32313500 - 32312999
Alignment:
| Q |
7 |
ggaggagcagagacagtagcatcagcaatggaatgggcaatgtcggagctaatgagaaatccagaagaactaaagcgtgtgcaacaagaactcgccactg |
106 |
Q |
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|||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
32313500 |
ggaggaacagaaacagtagcatcagcaatggaatgggcaatgtcggagctaatgagaaatccagaagaactaaagcgtgtgcaacaagaactcgccgttg |
32313401 |
T |
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| Q |
107 |
ttgttggcctagaccggcgcgtggaggaatcggacatcgagaaactcacttatctaaagtgtgccatcaaggagacattgcgtctccaccctcccatccc |
206 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |
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| T |
32313400 |
ttgttggcctagaccggcgcgtggaggaatcagacatcgagaaactcacttatctaaagtgtgccgtcaaggagacgttgcgtctccaccctcccatccc |
32313301 |
T |
|
| Q |
207 |
tcttctcctccatgaaaccgcaaaggatgcaacagttggtggttattttgttcctaagggctcgcgcgtgatgataaatgtgtgggctataggaagagac |
306 |
Q |
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||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32313300 |
ccttctcctccacgaaaccgcggaggatgcaacagttggtggttattttgttcctaagggctcgcgcgtgatgataaatgtgtgggctataggaagagac |
32313201 |
T |
|
| Q |
307 |
aaagactcgtggaaagatccggaagagtttaggccttcgcggtttttggactcaagtgcaccagattttaaaggaagtcattttgagtttattccatttg |
406 |
Q |
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| T |
32313200 |
aaagactcgtgggaagatccagaagagtttaggccttcgcggtttttggattcaagtgcaccagattttaaaggaagtcattttgagtttattccattcg |
32313101 |
T |
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| Q |
407 |
ggtctggtcgaaggtcttgtcctggaatgcaattgggcctttatgcgttggatttagctttggcgcatttacttcattgttttacttgggagttgccaaa |
506 |
Q |
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| T |
32313100 |
ggtctggtcgaaggtcttgtcctggaatgcaattgggcctttatgcgttggatttagctttggcacatttacttcattgttttacttgggagttgccgaa |
32313001 |
T |
|
| Q |
507 |
tg |
508 |
Q |
| |
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|| |
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| T |
32313000 |
tg |
32312999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 419
Target Start/End: Original strand, 18094006 - 18094051
Alignment:
| Q |
374 |
ttaaaggaagtcattttgagtttattccatttgggtctggtcgaag |
419 |
Q |
| |
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| T |
18094006 |
ttaaaggacatcattttgagcttattccatttgggtctggtagaag |
18094051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 155; Significance: 5e-82; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 126 - 501
Target Start/End: Complemental strand, 5046257 - 5045885
Alignment:
| Q |
126 |
cgtggaggaatcggacatcgagaaactcacttatctaaagtgtgccatcaaggagacattgcgtctccaccctcccatccctcttctcctccatgaaacc |
225 |
Q |
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|||||||||| | || |||||||||||||||||| |||| || | | | ||||| || ||||||||||||||||||| ||| ||||||| | ||||| |
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| T |
5046257 |
cgtggaggaaacagatatcgagaaactcacttatataaaatgcgtcgttaaggaaacgttgcgtctccaccctcccaccccccttctccac---gaaact |
5046161 |
T |
|
| Q |
226 |
gcaaaggatgcaacagttggtggttattttgttcctaagggctcgcgcgtgatgataaatgtgtgggctataggaagagacaaagactcgtggaaagatc |
325 |
Q |
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| T |
5046160 |
gtggaggacgcgatagttggtggttattttgttcctaagggctcgcgtgtgatgatatacatgtgggttataggaagagacaaagactcatgggaagatt |
5046061 |
T |
|
| Q |
326 |
cggaagagtttaggccttcgcggtttttggactcaagtgcaccagattttaaaggaagtcattttgagtttattccatttgggtctggtcgaaggtcttg |
425 |
Q |
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| T |
5046060 |
cggaagagtttagaccttcgcggtttttaaattcaagtgtaccagactttaaagaaagtcattttgagtttattccattcgggtaaggtcgaaggtcttg |
5045961 |
T |
|
| Q |
426 |
tcctgga-atgcaattgggcctttatgcgttggatttagctttggcgcatttacttcattgttttacttgggagttg |
501 |
Q |
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||| || |||||||||| ||||||| | || || |||||||||| |||||||||| ||||||||||||||||||| |
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| T |
5045960 |
-cctcgacatgcaattggccctttatacttttgacttagctttggtccatttacttcgttgttttacttgggagttg |
5045885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 370 - 504
Target Start/End: Original strand, 8262012 - 8262146
Alignment:
| Q |
370 |
gattttaaaggaagtcattttgagtttattccatttgggtctggtcgaaggtcttgtcctggaatgcaattgggcctttatgcgttggatttagctttgg |
469 |
Q |
| |
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||||| ||||||||| ||||||||||||||||||||||||| || || || || ||||| || ||||| ||||| | || ||| | ||||| || | | |
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| T |
8262012 |
gatttcaaaggaagtaattttgagtttattccatttgggtcaggacgtagatcctgtcccggtatgcagttgggtttgtacgcgcttgatttggcggtag |
8262111 |
T |
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| Q |
470 |
cgcatttacttcattgttttacttgggagttgcca |
504 |
Q |
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| T |
8262112 |
ctcatttacttcattgcttcacttgggagttgcca |
8262146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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