View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8952_low_12 (Length: 572)
Name: NF8952_low_12
Description: NF8952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8952_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 481; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 1 - 559
Target Start/End: Complemental strand, 43186578 - 43186018
Alignment:
| Q |
1 |
ttaagattcaagtggcattgtccaaagatccaagtggggcctaattgtcatagtgtgaagttgtcaaagcttaggagggatgggtagcatgcaagcagaa |
100 |
Q |
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| T |
43186578 |
ttaagattcaagtggcattgtccaaagatgcaagtggggcctaattgtcatagtgtgaagttgtcaaagcttaggagggatgggtagcatgcaagcagga |
43186479 |
T |
|
| Q |
101 |
ggctacacaattggtttgctacatcgagtatctgttgccaatagacgatagtagccgcggtagtggccgtgatagcggagcagctgccttccgcccccca |
200 |
Q |
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|||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
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| T |
43186478 |
ggctaccaaattggtttgctacattgagtatctgttgccaatagacgatagtagccgcggtggtggctgtgatagcggagcagctgccttccgcccccca |
43186379 |
T |
|
| Q |
201 |
tgcagaggtccggtgtatcctttaagattattttagtgtttatgatgaagaaaattatcagtttttatcatcattgttgttaaatagcagctgt--atag |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||| |
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| T |
43186378 |
tgcagaggtccggtgtatcctttaagattattttagtgtttatgatgaagaaaattatcagttgtaatcatcattgttgttaaatagcagctgtacatag |
43186279 |
T |
|
| Q |
299 |
ctcgtagcatagccaatttcaagcaaaccactcttctccgcgatctgcaatcgacaacagtggttatttttaaaccattcattttggcttaagttggatt |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43186278 |
ctcgtagcatagccaatttcaagcaaaccactcttctccgcgatctgcaatcgacaacagtggttatttttaaaccattcattttggcttaagttggatt |
43186179 |
T |
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| Q |
399 |
taccaattgaaaaaaccaattgctaagatgttagtggttgttttagcttcataacatctgaagaaatgttgagttagcaaccattttccgctctgcgatg |
498 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |
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| T |
43186178 |
taccaattgaaaaaaccaattgctaagatgttagtggttgtttcagcttcataacatctgaagaaatgttgacttagcaaccattttccactctgcgatg |
43186079 |
T |
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| Q |
499 |
taggttttccagaggttagagnnnnnnngcaacaagtgccaggcttgtgctcttcacaggt |
559 |
Q |
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| T |
43186078 |
taggttttccagaggttagaggttttttgcaacaagtgccaggcttgtgctcttcacaggt |
43186018 |
T |
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