View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8952_low_15 (Length: 533)
Name: NF8952_low_15
Description: NF8952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8952_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 8 - 532
Target Start/End: Complemental strand, 30403576 - 30403054
Alignment:
| Q |
8 |
ttggtggtgagttagaaatgcagatgttcccccgacatagtgggcataccctgtgtataattgaagaggttagatgcatacaaagactctcgaggcaggt |
107 |
Q |
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| T |
30403576 |
ttggaggtgagttagaaatgcagatgttcccccgacatagtgggcataccctgtgtataattgaagaggttagatgcatacaaagactctcgaggcaagt |
30403477 |
T |
|
| Q |
108 |
agagttgcattcgaatgaatcgtaaataacaaaattattacatatgaaaagaataaaacaaggtaaacgcgacattcttttgaaggtaaagaatcccaat |
207 |
Q |
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| T |
30403476 |
agagttgcattcgaatgaatcgtaaataacaaaattattacatatgaaaagaataaaacaaggtaaacgcgacattcttttgaaggtaaagaatcccaat |
30403377 |
T |
|
| Q |
208 |
atcattagaggagaacaactcagtgtgacagtcaacaatgtcacgtctaataatatcaggattctccacctcaaaaagacgcatacgtgttgagatagtt |
307 |
Q |
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| T |
30403376 |
atcattagaggagaacaactcagtgtgacggtcaacaatgtcacgtctaataatattaggattctccacctcaaaaagacgcttacgtgttgaaatagtt |
30403277 |
T |
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| Q |
308 |
tcgt--tataaatggagactgtattcataattgtcttgaatttaattgtgaaagagggtctaacgtaggtcaaacttttagattgcatgtattgagcaac |
405 |
Q |
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| T |
30403276 |
tggttgtataaatggagactgtattcataattgtcttgaatttaattgtgaaagagggtctaac----gtcaaacttttagattgcatgcgttgagcaac |
30403181 |
T |
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| Q |
406 |
gaaatattgaattcaagggttttgtctgccagatattcaaacgagatgaaactcaacatgcttaatcttaaagcatgtgctactaaatgagaaaacattt |
505 |
Q |
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|||| |||||||| ||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||| | ||||||| ||||| ||||||||||| |
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| T |
30403180 |
gaaacattgaatttgagggttttgtctgccagatatacaaatgagatgaaactcaacatacttaatcttaaaccctgtgctaataaataagaaaacattt |
30403081 |
T |
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| Q |
506 |
gaagagtttgagatacaagacaaatat |
532 |
Q |
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| T |
30403080 |
gaagagctagagatacaagataaatat |
30403054 |
T |
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