View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8952_low_2 (Length: 781)
Name: NF8952_low_2
Description: NF8952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8952_low_2 |
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| [»] scaffold0011 (3 HSPs) |
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Alignment Details
Target: scaffold0011 (Bit Score: 295; Significance: 1e-165; HSPs: 3)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 250 - 647
Target Start/End: Original strand, 240077 - 240461
Alignment:
| Q |
250 |
tgtcaacatgtccgtgtcatgtccggtgtccgtgtctgagtttatgctttatagctatacagacaatcgacttattatctcttgcttctgattttggggg |
349 |
Q |
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| T |
240077 |
tgtcaacatgtccgtgtcatgtccggtgtccgtgtctgagtttatactttatagctatacagacaatcgacttattatctcttgcttctgattttggggg |
240176 |
T |
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| Q |
350 |
atagcatgttgctgccctgtgtagggagtgttggtggcaataagttgtggccatgtcatcatgtagtttcatgtaatcatgttgcatcaaatgaagaagg |
449 |
Q |
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| T |
240177 |
atagcatgttgctgccctgtgtagggagtgttgatggcaataaattgtggccatgtcatcatgta----------atcatgttgcatcaaatggagaagg |
240266 |
T |
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| Q |
450 |
acggtccttggatattagaggatgcttgtgtatttgacttgatatgggtgnnnnnnngtatgtgtgtggcatattttatgtgactatttttacttgctta |
549 |
Q |
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| T |
240267 |
acggtccttggatattagaggatgcttgtgtatttgacttgatatgggtgtttttttgtatgtgtgtggcatatt--atgtgactatttt-acttactta |
240363 |
T |
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| Q |
550 |
tattgcatctaatcaaaacatgccaagtaattagttatagagatgttttagaaattaacctaaaaaagtggtatcattgagtgcggtgtatacaaatt |
647 |
Q |
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| T |
240364 |
tattgcatctaatcaaaacatgccaagtaattagttatagagatattttagaaattaacccaaaaaagtggtatcattgagtgcggtgtatacaaatt |
240461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011; HSP #2
Raw Score: 184; E-Value: 4e-99
Query Start/End: Original strand, 13 - 204
Target Start/End: Original strand, 239846 - 240037
Alignment:
| Q |
13 |
actttggtgtttgcacatagctctctcataaaaagataatggtgaattaagcttatgtcaaaacgatatgcatttttatcagttttgacgcatggagatt |
112 |
Q |
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| T |
239846 |
actttggtgtttgcacatagctctctcataaaaagataatggtgaattaagcttatgtcaaaacgatatgcatttttatcagttttgacgcatggagatt |
239945 |
T |
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| Q |
113 |
tctatacagctatgaagcacatgctccttggattaggcgtgtcccgttatctgatacgtatcatgtccgacatgatgtcaccgacacatatg |
204 |
Q |
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| T |
239946 |
tctatatagctatgaagcacatgctccttggattaggcgtgtcccgttatctgatacgtatcatgtccgacatgatgacaccgacacatatg |
240037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011; HSP #3
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 647 - 764
Target Start/End: Original strand, 240505 - 240622
Alignment:
| Q |
647 |
tttcacatttatggtttcacaagtcatatcggttttccggtgtataaaaattaaatccattttactttgctttcaaatttaggtgttacactcttatcgg |
746 |
Q |
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| T |
240505 |
tttcacatttatggtttcacaagtcatatcggttttccggtgtataaaaattaaatccattttactttgctttcacatttaggtgttacactcttatcgg |
240604 |
T |
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| Q |
747 |
cttcacacatggaatttg |
764 |
Q |
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| T |
240605 |
cttcacacatggaatttg |
240622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 590 - 628
Target Start/End: Complemental strand, 44599522 - 44599484
Alignment:
| Q |
590 |
agatgttttagaaattaacctaaaaaagtggtatcattg |
628 |
Q |
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| T |
44599522 |
agatattttagaaattaacctaaagaagtggtatcattg |
44599484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 258 - 292
Target Start/End: Complemental strand, 56049872 - 56049838
Alignment:
| Q |
258 |
tgtccgtgtcatgtccggtgtccgtgtctgagttt |
292 |
Q |
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| T |
56049872 |
tgtccgtgtcgtgtccggtgtccgtgtctgagttt |
56049838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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