View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8952_low_21 (Length: 476)
Name: NF8952_low_21
Description: NF8952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8952_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 348; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 460
Target Start/End: Original strand, 50723875 - 50724342
Alignment:
| Q |
1 |
aatatacatacaatctatatggttaggataagtaattaaacattctttacacccacagtcacagtcagtatatatcttaattaattaatttagagtatgt |
100 |
Q |
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| T |
50723875 |
aatatacatacaatctatatggttaggataagtaattaaacattctttacacccaca------gtcagtatatatcttaattaattaatttagtgtatgt |
50723968 |
T |
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| Q |
101 |
acgtctaagtaagagatacctgtaaatccatatcttaaggccacccttgatgagtttggtgtagatggggagtacagaaaaaacagagaagttgtaagtc |
200 |
Q |
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| T |
50723969 |
acgtataagtaagagatacctgtaaatccatatcttaaggccacccttgatgagtttggtgtagatggggagtacagaaaaaacagagaagttgtaagtc |
50724068 |
T |
|
| Q |
201 |
ctcaatatggaattactgacaaatgagacatatatagatggaaattagtattcaatattctata------------caattaattaagggatc--nnnnn |
286 |
Q |
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| T |
50724069 |
ctcaatatggaattactgacaaatgagacatatatagatggaaattagtattcaatattctatacaaaaaaaatatcaattaattaagggatctatatat |
50724168 |
T |
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| Q |
287 |
nnnnnnnncaaattgtagtgcttacttgcaaaccttccatgctatgttattgttttctcttatagtatttgcatgaaaagatgattgaacatctatcctg |
386 |
Q |
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| T |
50724169 |
atatatatcaaattgtagtgcttacttgcaaaccttccatgctatgttattgttttctcttatattatttgcatgaaaagatgattgaacatctatcctg |
50724268 |
T |
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| Q |
387 |
ttgaaaaattcttctgcatatgttgaataacaaggatcatagcccccaaaaattctcatcctcttcaatctata |
460 |
Q |
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| T |
50724269 |
ttgaaaaattcttctgcatatgttgaataacaaggatcatagcccccaaaaattctcatcctcttcaatctata |
50724342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 295 - 460
Target Start/End: Original strand, 50731548 - 50731713
Alignment:
| Q |
295 |
caaattgtagtgcttacttgcaaaccttccatgctatgttattgttttctcttatagtatttgcatgaaaagatgattgaacatctatcctgttgaaaaa |
394 |
Q |
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||||||||||||||||||||||| |||||||| |||| ||| ||||| ||||| || | |||||||||| |||| | |||||||||| ||| || ||||| |
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| T |
50731548 |
caaattgtagtgcttacttgcaacccttccattctattttactgtttcctcttttattgtttgcatgaatagataactgaacatctaccctattaaaaaa |
50731647 |
T |
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| Q |
395 |
ttcttctgcatatgttgaataacaaggatcatagcccccaaaaattctcatcctcttcaatctata |
460 |
Q |
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| T |
50731648 |
ttcttctgcatatatggaataacaagggtcatagcccccaaaacttctcatcctcttcattctata |
50731713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 111 - 219
Target Start/End: Original strand, 50731366 - 50731474
Alignment:
| Q |
111 |
aagagatacctgtaaatccatatcttaaggccacccttgatgagtttggtgtagatggggagtacagaaaaaacagagaagttgtaagtcctcaatatgg |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || || ||||||||||||| || |||||| | ||||||| |
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| T |
50731366 |
aagagatacctgtaaatccatatcttaaggccacccttgatgagtttagtgtagatgggtaggaccgaaaaaacagagatgtcgtaagtattgaatatgg |
50731465 |
T |
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| Q |
211 |
aattactga |
219 |
Q |
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|| |||||| |
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| T |
50731466 |
aaatactga |
50731474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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