View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8952_low_25 (Length: 394)
Name: NF8952_low_25
Description: NF8952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8952_low_25 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 374; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 378
Target Start/End: Original strand, 27606065 - 27606442
Alignment:
| Q |
1 |
taatccttgaacaagaaaagtttgcaacatcaacttcatggtattttctttttctttcaattatccaaggaaagaatagtttacaaacgcgtcgacattc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27606065 |
taatccttgaacaagaaaagtttgcaacatcaacttcatggtattttctttttctttcaattatccaaggaaagaatagtttacaaacgcgtcgacattc |
27606164 |
T |
|
| Q |
101 |
gaatacattatccaaggatggcctcctgaaatttattcaaataaaaacacaaattgcattattattttatactgcataggtcatgactctggcaaaagta |
200 |
Q |
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| T |
27606165 |
gaatacattatccaaggatggcctcctgaaatttattcaaataaaaacacaaattgcattattattttatactgcataggtcatgactctggcaaaagta |
27606264 |
T |
|
| Q |
201 |
tttcatgaatgttggctcacagattcagttctttatcccatatgagttcctttagatcagaatgcttttttcctacaaggatagtacgtttagtttaaga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
27606265 |
tttcatgaatgttggctcacagattcagttctttatcccatatgagttcctttagatcagaatgcttttttcctgcaaggatagtacgtttagtttaaga |
27606364 |
T |
|
| Q |
301 |
aacccatccaaccatagccgttttgaataaaatattaataaaagtacttacaatagcaacaaatacaaaacatgtttc |
378 |
Q |
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| T |
27606365 |
aacccatccaaccatagccgttttgaataaaatattaataaaagtacttacaatagcaacaaatacaaaacatgtttc |
27606442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 3 - 243
Target Start/End: Original strand, 27340301 - 27340564
Alignment:
| Q |
3 |
atccttgaacaagaaaagtttgcaacatcaacttcatggtattttctttttctttcaattatccaaggaaagaatagtttacaaacgcgtcgacattcga |
102 |
Q |
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|||||| ||||| ||||| | |||||| |||||||||| |||||| || || |||| |||||||||||||| || ||||||||||||||||||||||| | |
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| T |
27340301 |
atcctttaacaacaaaagctagcaacaacaacttcatgatatttttttattatttccattatccaaggaaacaaaagtttacaaacgcgtcgacattcaa |
27340400 |
T |
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| Q |
103 |
atacattatccaagg--atggcctcc--------------------tg-aaatttattcaaataaaaacacaaattgcattattattttatactgcatag |
179 |
Q |
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||||||||| ||||| ||||||||| || ||||||| |||||||||||||||||||||| | ||||||||||||||||| |
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| T |
27340401 |
atacattattcaaggatatggcctccatagcaattatgagcatggttgtaaatttaatcaaataaaaacacaaattgcaattatattttatactgcatag |
27340500 |
T |
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| Q |
180 |
gtcatgactctggcaaaagtatttcatgaatgttggctcacagattcagttctttatcccatat |
243 |
Q |
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| T |
27340501 |
gtcatgactctggcaaaacgatctcatgaatgttggctctcagattcagttctttatcccatat |
27340564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 3 - 243
Target Start/End: Original strand, 27401041 - 27401304
Alignment:
| Q |
3 |
atccttgaacaagaaaagtttgcaacatcaacttcatggtattttctttttctttcaattatccaaggaaagaatagtttacaaacgcgtcgacattcga |
102 |
Q |
| |
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|||||| ||||| ||||| | |||||| |||||||||| |||||| || || |||| |||||||||||||| || ||||||||||||||||||||||| | |
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| T |
27401041 |
atcctttaacaacaaaagctagcaacaacaacttcatgatatttttttattatttccattatccaaggaaacaaaagtttacaaacgcgtcgacattcaa |
27401140 |
T |
|
| Q |
103 |
atacattatccaagg--atggcctcc--------------------tg-aaatttattcaaataaaaacacaaattgcattattattttatactgcatag |
179 |
Q |
| |
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||||||||| ||||| ||||||||| || ||||||| |||||||||||||||||||||| | ||||||||||||||||| |
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| T |
27401141 |
atacattattcaaggatatggcctccatagcaattatgagcatggttgtaaatttaatcaaataaaaacacaaattgcaattatattttatactgcatag |
27401240 |
T |
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| Q |
180 |
gtcatgactctggcaaaagtatttcatgaatgttggctcacagattcagttctttatcccatat |
243 |
Q |
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| T |
27401241 |
gtcatgactctggcaaaacgatctcatgaatgttggctctcagattcagttctttatcccatat |
27401304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 288 - 326
Target Start/End: Original strand, 27418630 - 27418668
Alignment:
| Q |
288 |
gtttagtttaagaaacccatccaaccatagccgttttga |
326 |
Q |
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| T |
27418630 |
gtttagtttaagaaacccatccaaccatagccattttga |
27418668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 288 - 326
Target Start/End: Complemental strand, 68733 - 68695
Alignment:
| Q |
288 |
gtttagtttaagaaacccatccaaccatagccgttttga |
326 |
Q |
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| T |
68733 |
gtttagtttaagaaacccatccaaccatagccattttga |
68695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 178 - 326
Target Start/End: Complemental strand, 5083680 - 5083534
Alignment:
| Q |
178 |
aggtcatgactctggcaaaagtatttcatgaatgttggctcacagattcagttctttatcccatatgagttcctttagatcagaatgcttttttcctaca |
277 |
Q |
| |
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||||||||||||| ||||||| || |||| ||||| | || ||||| ||||||||||| | || | ||| | |||||||||| ||| |||||| | |
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| T |
5083680 |
aggtcatgactcttgcaaaaggatctcataaatgtcagttcttagatttagttctttatcacgcattacttcttgtagatcagaaagctcttttccagta |
5083581 |
T |
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| Q |
278 |
aggatagtacgtttagtttaagaaacccatccaaccatagccgttttga |
326 |
Q |
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||||| | ||||||||| ||||| ||||||||||||||||||||||| |
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| T |
5083580 |
aggatgga--gtttagtttgagaaatccatccaaccatagccgttttga |
5083534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 5084003 - 5083947
Alignment:
| Q |
2 |
aatccttgaacaagaaaagtttgcaacatcaacttcatggtattttctttttctttc |
58 |
Q |
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|||| |||||||| |||||||||||| ||||||||| | ||||| ||||||||||| |
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| T |
5084003 |
aatcattgaacaacaaaagtttgcaatatcaacttccagatatttgctttttctttc |
5083947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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