View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8952_low_26 (Length: 393)
Name: NF8952_low_26
Description: NF8952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8952_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 18 - 385
Target Start/End: Complemental strand, 30956759 - 30956392
Alignment:
| Q |
18 |
actaacatcaacatcttcaacattttgtttccctttagataggaacctccagctcaagtaagctaatagtaatgtcaatatcccacaaataagggaaagc |
117 |
Q |
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| T |
30956759 |
actaacatcaacatcttcaacattttgtttccctttagataggaacctccagctcaagtaagctaatagtaatgtcaatatcccacaaataagggaaagc |
30956660 |
T |
|
| Q |
118 |
ccaacggcccctaaagttgcaaaccatattagaggcaacttgaacaatccacaatcaacaccaacctttgaagccttgcgaaccagctcgggaaagtaaa |
217 |
Q |
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| T |
30956659 |
ccaacggcccctaaagttgcaaaccatattagaggcaactcgaacaatccacaatcaacaccaacctttgaagccctgcgaaccagctcgggaaagtaaa |
30956560 |
T |
|
| Q |
218 |
aaaggggtgcagaaattattagtagtatacagaaaatctgcagtccaagttgtagtgaacaaaccaacatcagagtcagaaaataacacaacatgaactt |
317 |
Q |
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| T |
30956559 |
aaaggggtgcagaaattattagtagtatacagaaaatctgcagtccaagttgtagtgaacaaaccaacatcagagtcagaaaataacacaacatgaactt |
30956460 |
T |
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| Q |
318 |
tgtgatatgtgttatttctggaaagaatgcttcaaatgcttccccaaaggcaagtactagtgtctgtg |
385 |
Q |
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| T |
30956459 |
tgtgatgtgtgttatttctggaaagaatacttcaaatgcttccccaaaggcaagtactagtgtttgtg |
30956392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 45 - 379
Target Start/End: Complemental strand, 30960718 - 30960375
Alignment:
| Q |
45 |
tttccctttagataggaacctccagctcaagtaagctaatagtaatgtcaatatcccacaaataagggaaagcccaacggcccctaaagttgcaaaccat |
144 |
Q |
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| T |
30960718 |
tttccctttatataagaacctccagcttaaataaaccattagcaatgtcactaaaccacaaatgagggaaaggccaacagcccctaaagttgcaaaccca |
30960619 |
T |
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| Q |
145 |
attagaggcaacttgaacaatccacaat---caacaccaacctttgaa------gccttgcgaaccagctcgggaaagtaaaaaaggggtgcagaaatta |
235 |
Q |
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|| | |||||||||||| ||||| | | ||| ||||| |||| |||||||||||||||||||| |||||||||| |||||||||||| | |
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| T |
30960618 |
atcaaaggcaacttgaatgttccaccacatgccacatcaacccctgaaactgaagccttgcgaaccagctcggggaagtaaaaaaagggtgcagaaatca |
30960519 |
T |
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| Q |
236 |
ttagtagtatacagaaaatctgcagtccaagttgtagtgaacaaaccaacatcagagtcagaaaataacacaacatgaactttgtgatatgtgttatttc |
335 |
Q |
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|||||| ||||| || || || | |||| ||||||||| | ||||||||||| ||||||||||||||||| |||||||||| || ||||| ||||| |
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| T |
30960518 |
atagtagcatacaaaatatttgtaatccaggttgtagtggaacaaccaacatcaatgtcagaaaataacacaaaatgaactttgctatttgtgtcatttc |
30960419 |
T |
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| Q |
336 |
tggaaagaatgcttcaaatgcttccccaaaggcaagtactagtg |
379 |
Q |
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|||||||||||||| ||||||||||||||| | ||||||||||| |
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| T |
30960418 |
tggaaagaatgctttaaatgcttccccaaatggaagtactagtg |
30960375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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