View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8952_low_30 (Length: 377)
Name: NF8952_low_30
Description: NF8952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8952_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 363
Target Start/End: Original strand, 33769861 - 33770223
Alignment:
| Q |
1 |
ttttgactcaatttagcatgcttcatttgtttaattaaatcactttggctgaaattttaaagaaaagnnnnnnntctaaattgtgctatgtaagaaccta |
100 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
33769861 |
ttttgactcaatttagcatgtttcatttgtttaattaaatcactttggctgaaattttaaagaaaagaaaaaaatctaaattgtgctatgtaagaaccta |
33769960 |
T |
|
| Q |
101 |
aatttgtatacgtctgcatgaatttggattggtggtaagtttggccaaatcatgctggtaaaatgattttgtgtagcttttnnnnnnnttgcggtgactc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
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| T |
33769961 |
aatttgtatacgtctgcatgaatttggattggtggtaagtttggccaaatcatgctggtaaaatgaatttgtgtagcttttaaaaaaattgcggtgactc |
33770060 |
T |
|
| Q |
201 |
accgtgatccagtcaatctcttcggactctctgaacacgcattacctataagcatgtgtgccattttctacatgtcgagacattcttgccgtcaaaacat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33770061 |
accgtgatccagtcaatctcttcggactctctgaacacgcattacctttaagcatgtgtgccattttctacatgtcgagacattcttgccgtcaaaacat |
33770160 |
T |
|
| Q |
301 |
agaagctacaaaactaaacttctactaaaacgttgtttcttgtcgtgagttccctaaactatt |
363 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33770161 |
agaagctacaaaactaaacttctactaaaacgttgtttcttgtcgtgagttccctaaactatt |
33770223 |
T |
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