View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8952_low_32 (Length: 347)
Name: NF8952_low_32
Description: NF8952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8952_low_32 |
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| [»] scaffold0144 (1 HSPs) |
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| [»] scaffold0511 (1 HSPs) |
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| [»] scaffold0256 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-118; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 10 - 329
Target Start/End: Original strand, 16916644 - 16916963
Alignment:
| Q |
10 |
gtttcgtgttgagcggttacgagggaatgaatattccaaactggatgacagatatttctagtttggcatgtttggttgatgttaaactcatgaagtgcat |
109 |
Q |
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|||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||| ||||| |
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| T |
16916644 |
gtttcgggttgagccgttacggcggaatgaatattccaaactggatgacagatatttctattttgggacgtttggttgatgttaaactcatgaattgcat |
16916743 |
T |
|
| Q |
110 |
aaactgtcgtcaacttcctccacttggtaaattaaattgtttaaccactctttatctatctcaaatgacaaatgtgatgtacattgatgattcaccttat |
209 |
Q |
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||||||| |||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
16916744 |
aaactgtagtcaacttcctccacttggtaaattacctttgttaaccactctttatttatctcaaatgacaaatgtgaagtacattgatgattcaccttat |
16916843 |
T |
|
| Q |
210 |
gaaaaagcaaaagacaaggcttttccgtcattaagagaaatgacactatatgatttacctaatttaaagagggtgctgagaatcgaaggagtagagatgc |
309 |
Q |
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| T |
16916844 |
gaaatttcaaccgaaaacgcttttccgtcattaacggaaatgacactatatgatttacctaatttaaagagtgtgctgagaatcgaaggagtagagatgc |
16916943 |
T |
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| Q |
310 |
tatcacaactttctaagtta |
329 |
Q |
| |
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| |||||||||||||||||| |
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| T |
16916944 |
tctcacaactttctaagtta |
16916963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 17 - 329
Target Start/End: Original strand, 16911456 - 16911768
Alignment:
| Q |
17 |
gttgagcggttacgagggaatgaatattccaaactggatgacagatatttctagtttggcatgtttggttgatgttaaactcatgaagtgcataaactgt |
116 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||| |||||||||||| |
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| T |
16911456 |
gttgagcggttaccggggaatgaatattccaaactggatgacagatatttctattttgggacgtttggttgatgttaaactcatgaattgcataaactgt |
16911555 |
T |
|
| Q |
117 |
cgtcaacttcctccacttggtaaattaaattgtttaaccactctttatctatctcaaatgacaaatgtgatgtacattgatgattcaccttatgaaaaag |
216 |
Q |
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| |||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
16911556 |
agccaacttcctccacttggtaaattaccttttttaaacactctttatctatctcaaatgacaaatgtgaagtacattgatgattcaccttatgaaattt |
16911655 |
T |
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| Q |
217 |
caaaagacaaggcttttccgtcattaagagaaatgacactatatgatttacctaatttaaagagggtgctgagaatcgaaggagtagagatgctatcaca |
316 |
Q |
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||| || || |||||||||||||||| ||||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |
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| T |
16911656 |
caaccgaaaatgcttttccgtcattaacggaaatgacactatttgatttacctaatttagagagggtgttgagaatcgaaggagtagagatgctatcaca |
16911755 |
T |
|
| Q |
317 |
actttctaagtta |
329 |
Q |
| |
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||||||||||||| |
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| T |
16911756 |
actttctaagtta |
16911768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 102 - 177
Target Start/End: Original strand, 16974869 - 16974935
Alignment:
| Q |
102 |
aagtgcataaactgtcgtcaacttcctccacttggtaaattaaattgtttaaccactctttatctatctcaaatga |
177 |
Q |
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||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
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| T |
16974869 |
aagtgcagaaactgtcgtcaacttcctcgacttggta---------gtttaaccactctttatctatctcaaatga |
16974935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 170
Target Start/End: Complemental strand, 16837465 - 16837327
Alignment:
| Q |
32 |
gggaatgaatattccaaactggatgacagatatttctagtttggcatgtttggttgatgttaaactcatgaagtgcataaactgtcgtcaacttcctcca |
131 |
Q |
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|||||| ||||||||||| ||||||| | ||| ||||| ||||| | | || ||| |||||| |||| || || | |||||||| | ||||| ||| |
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| T |
16837465 |
gggaataaatattccaaattggatgaaaaatacttctattttggaagggttagtttatgttatactctataactgtaaaaactgtcagcggcttccccca |
16837366 |
T |
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| Q |
132 |
cttggtaaattaaattgtttaaccactctttatctatct |
170 |
Q |
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|||||||||||| ||||||||||||||||||| ||||| |
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| T |
16837365 |
cttggtaaattaccttgtttaaccactctttatgtatct |
16837327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 123 - 164
Target Start/End: Original strand, 18807686 - 18807727
Alignment:
| Q |
123 |
cttcctccacttggtaaattaaattgtttaaccactctttat |
164 |
Q |
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| T |
18807686 |
cttcctccacttggtaaattaccttgtttaaccactctttat |
18807727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 123 - 164
Target Start/End: Original strand, 18874683 - 18874724
Alignment:
| Q |
123 |
cttcctccacttggtaaattaaattgtttaaccactctttat |
164 |
Q |
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||||||||||||||||||||| ||||||||||||||||||| |
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| T |
18874683 |
cttcctccacttggtaaattaccttgtttaaccactctttat |
18874724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 270 - 321
Target Start/End: Complemental strand, 16985987 - 16985936
Alignment:
| Q |
270 |
aatttaaagagggtgctgagaatcgaaggagtagagatgctatcacaacttt |
321 |
Q |
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|
||||||||||||||| | | | |||||||||||||||||||| ||||||||| |
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| T |
16985987 |
aatttaaagagggtgttaaaagtcgaaggagtagagatgctaacacaacttt |
16985936 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 16842485 - 16842444
Alignment:
| Q |
123 |
cttcctccacttggtaaattaaattgtttaaccactctttat |
164 |
Q |
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||||| ||||||||||||||| ||||||||||||||||||| |
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| T |
16842485 |
cttcccccacttggtaaattaccttgtttaaccactctttat |
16842444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 321
Target Start/End: Original strand, 16869608 - 16869664
Alignment:
| Q |
265 |
tacctaatttaaagagggtgctgagaatcgaaggagtagagatgctatcacaacttt |
321 |
Q |
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|
|||| |||||| |||||||| || | |||||||||||||||||||| ||||||||| |
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| T |
16869608 |
taccgaatttagagagggtgttggaagtcgaaggagtagagatgctaccacaacttt |
16869664 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0144 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0144
Description:
Target: scaffold0144; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 122 - 200
Target Start/End: Original strand, 3280 - 3358
Alignment:
| Q |
122 |
acttcctccacttggtaaattaaattgtttaaccactctttatctatctcaaatgacaaatgtgatgtacattgatgat |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||| ||||| ||||| | || | | ||||||||||||| |
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| T |
3280 |
acttcctccacttggtaaattaccttgtttaaccactctttatgtatctggaatgagagatttaaagtacattgatgat |
3358 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0511 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0511
Description:
Target: scaffold0511; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 8021 - 7980
Alignment:
| Q |
123 |
cttcctccacttggtaaattaaattgtttaaccactctttat |
164 |
Q |
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| T |
8021 |
cttcctccacttggtaaattaccttgtttaaccactctttat |
7980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 321
Target Start/End: Original strand, 38940981 - 38941038
Alignment:
| Q |
264 |
ttacctaatttaaagagggtgctgagaatcgaaggagtagagatgctatcacaacttt |
321 |
Q |
| |
|
||||| |||||| |||||||| || | |||||||||||||||||||| ||||||||| |
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| T |
38940981 |
ttaccaaatttagagagggtgttggaagtcgaaggagtagagatgctaccacaacttt |
38941038 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 321
Target Start/End: Complemental strand, 7696 - 7636
Alignment:
| Q |
261 |
gatttacctaatttaaagagggtgctgagaatcgaaggagtagagatgctatcacaacttt |
321 |
Q |
| |
|
|||||||| |||||| |||||||| || | ||||||||||||||||||| ||||||||| |
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|
| T |
7696 |
gatttaccaaatttagagagggtgttggaagccgaaggagtagagatgctaccacaacttt |
7636 |
T |
|
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