View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8952_low_36 (Length: 338)
Name: NF8952_low_36
Description: NF8952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8952_low_36 |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 18 - 265
Target Start/End: Complemental strand, 43188107 - 43187860
Alignment:
| Q |
18 |
ctttctagttgtaacaacgatgatgttgagaaaaacagaccttcgacaatcaaatcctctcaaatttcgtctcattgtattccattccatttttcttcat |
117 |
Q |
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| T |
43188107 |
ctttctagttgtaacaacgatgatgttgagaaaaacagaccttcgacaatcaaatcctctcaaatttcgtctcattgtattccattccatttttcttcat |
43188008 |
T |
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| Q |
118 |
gaattgaaagatatcagtggaggtcacaatatgaattcaattaattgcagtgttttaaagactgaacattgaaccaagaatatctctggatcatggttga |
217 |
Q |
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| T |
43188007 |
gaactgaaagatatcagtggaggtcacaatatgaattcaattaattgcagtgttttaaagactgaacattgaaccaagaatatctctggatcatggttga |
43187908 |
T |
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| Q |
218 |
attgttttaaaccactcaaaccgcaattaaactactcaaatagcagaa |
265 |
Q |
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| T |
43187907 |
attgttttaaatcactcaaaccgcaattaaactaatcaaataacagaa |
43187860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 265 - 319
Target Start/End: Complemental strand, 43187248 - 43187195
Alignment:
| Q |
265 |
aaacacagatttacacagtcatgagaattcaaactcaatcaaaaacacacttgat |
319 |
Q |
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| T |
43187248 |
aaacacagatt-acacagtcatgagaattcaaactcaatcaaaaacacacttgat |
43187195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 141 - 184
Target Start/End: Complemental strand, 22710133 - 22710090
Alignment:
| Q |
141 |
tcacaatatgaattcaattaattgcagtgttttaaagactgaac |
184 |
Q |
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| T |
22710133 |
tcacaatatgacttcaattaattgcagtgttttaaagactgaac |
22710090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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