View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8952_low_39 (Length: 316)
Name: NF8952_low_39
Description: NF8952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8952_low_39 |
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Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 23 - 310
Target Start/End: Complemental strand, 53819749 - 53819462
Alignment:
| Q |
23 |
gtcttctagtttgatcaaaattgttctcattatttttgcccaaaatactccatgggaagctagaaattaatccttctaaggtatcgagatctatttaaga |
122 |
Q |
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| T |
53819749 |
gtcttctagtttgatcaaaattgttctcattatttttgcccaaaatactccatgggaagctagaaattaatccttctaaggtattgacatctatttaaga |
53819650 |
T |
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| Q |
123 |
gtttcacatctatcaacgagtgttcttttacatgcacatgtcaaaatctaacttataatcaaatggttaggagactcaattgggttgcacttatttctca |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53819649 |
gtttcacatctatcaacgagtgttcttttacatgcacatgtcaaaatctaacttataatcaaatggttaggagactcaattgggttgcacttatttctca |
53819550 |
T |
|
| Q |
223 |
tttgctagactaaaaaacagagtgtgtgtacatatgaaaatttcatggagacgttcataataacctctcacatgtttacaccaccaaa |
310 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53819549 |
tttgctagactaaaaaacagtgtgtgtgtacatatgaaaatttcatggagacgttcataataacctctcacatgtttacaccaccaaa |
53819462 |
T |
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