View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8952_low_41 (Length: 306)
Name: NF8952_low_41
Description: NF8952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8952_low_41 |
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Alignment Details
Target: chr8 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 18 - 305
Target Start/End: Original strand, 178704 - 178991
Alignment:
| Q |
18 |
ttatagaagatcttaacgaacactacaacaatgaatggaaaaaggctatgggtacattaagatgggtttatttccgtgatccttggagaagcagttctac |
117 |
Q |
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| T |
178704 |
ttatagaagatcttaacgaacactacaacaatgaatggaaaaaggctatgggtacattaagatgggtttatttccgtgatccttggagaagcagttctac |
178803 |
T |
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| Q |
118 |
catagttggaataactattttaatattcactatcttcaactttcgtcgagttgttgatttaatgttttagtcctcttataattatatgtattgaatcact |
217 |
Q |
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| T |
178804 |
cgtagttggaataactattctaatattcactatcttcaactttcgtcgagttgttgatctaatgttttagtcctcttataattatatgtattgaatcact |
178903 |
T |
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| Q |
218 |
tttatctatattctaaataatttttagtgattgcaatataactcttttctcattagtcattttcatgtacaagagtaaatgttgcaca |
305 |
Q |
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| T |
178904 |
tttatctatattctaaataatttttagtgattgcaatataactcttttctcattagtcattttcatgtacaagagtaaatgttgcaca |
178991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 18 - 220
Target Start/End: Complemental strand, 115086 - 114884
Alignment:
| Q |
18 |
ttatagaagatcttaacgaacactacaacaatgaatggaaaaaggctatgggtacattaagatgggtttatttccgtgatccttggagaagcagttctac |
117 |
Q |
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| T |
115086 |
ttatggaagatcttaatgaacactacaacagtgagtggaaaagggctatgggtacattaaggtgggtttattttcgtgatccttggagaagcagttctac |
114987 |
T |
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| Q |
118 |
catagttggaataactattttaatattcactatcttcaactttcgtcgagttgttgatttaatgttttagtcctcttataattatatgtattgaatcact |
217 |
Q |
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| T |
114986 |
cataatcgggatagttgttctaatattcactatctttaactttcgtcgcgttgttggtctaatgttttagttatttgaaaattatatgtattgaataact |
114887 |
T |
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| Q |
218 |
ttt |
220 |
Q |
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| T |
114886 |
ttt |
114884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 607379 - 607439
Alignment:
| Q |
18 |
ttatagaagatcttaacgaacactacaacaatgaatggaaaaaggctatgggtacattaag |
78 |
Q |
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| T |
607379 |
ttatggaagatcttaatgaacactacaacagtggatggagaaaggctatgggtccattaag |
607439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 55 - 221
Target Start/End: Complemental strand, 37437777 - 37437611
Alignment:
| Q |
55 |
gaaaaaggctatgggtacattaagatgggtttatttccgtgatccttggagaagcagttctaccatagttggaataactattttaatattcactatcttc |
154 |
Q |
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| T |
37437777 |
gaaaacggctattggtacattaagatgggtttacaaccgtgttccttggaggggtagttttactatagttgggataattgttctaatattcactatcttc |
37437678 |
T |
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| Q |
155 |
aactttcgtcgagttgttgatttaatgttttagtcctcttataattatatgtattgaatcactttta |
221 |
Q |
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| T |
37437677 |
aactttcgccgcgtcgttgatctagacttttagttattagaaaattatatgtattgaataactttta |
37437611 |
T |
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