View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8952_low_45 (Length: 276)

Name: NF8952_low_45
Description: NF8952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8952_low_45
NF8952_low_45
[»] chr1 (3 HSPs)
chr1 (11-258)||(37492951-37493199)
chr1 (70-253)||(41958351-41958537)
chr1 (79-258)||(38037442-38037625)
[»] chr5 (5 HSPs)
chr5 (72-258)||(26133512-26133702)
chr5 (165-252)||(26689170-26689258)
chr5 (165-252)||(26958901-26958989)
chr5 (197-258)||(36268343-36268404)
chr5 (171-258)||(25454201-25454288)
[»] chr3 (3 HSPs)
chr3 (134-258)||(6821072-6821196)
chr3 (165-258)||(7129275-7129367)
chr3 (193-226)||(2902709-2902742)
[»] chr4 (4 HSPs)
chr4 (166-258)||(1073301-1073393)
chr4 (134-222)||(396473-396561)
chr4 (195-258)||(21050186-21050249)
chr4 (147-242)||(43345656-43345751)
[»] chr6 (1 HSPs)
chr6 (172-251)||(12343331-12343410)


Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 11 - 258
Target Start/End: Complemental strand, 37493199 - 37492951
Alignment:
Q  11 tttggtgttgtatcatataaatatttctcactagtactagtttaggggggttttcacaagttcaaagttccctaaatgttttttggctttatgttacttg 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  37493199 tttggtgttgtatcatataaatatttctcactagtactagtttaggggggttttcgcaagttcaaagttccctaaatgttttttggctttatgttacttg 37493100  T
Q  111 ggttatttgaaaggaacttaacgtatttttcagaggaaggaggataacttacatgctctttgtgaaagggtaaaactttagtcatattggtggtttaagt 210  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  37493099 ggttatttgaaaggaacttaacatatttttcagaggaaggaggataacttacatgctctttgtgaaagggtaaaacttcagtcatattggtggtttaagt 37493000  T
Q  211 caaaatatgttttatttga-ctttgactatcaattatggaggctaaatc 258  Q
    | |||||||||||||| || |||||||||||||||||||||||||||||    
T  37492999 cgaaatatgttttattcgatctttgactatcaattatggaggctaaatc 37492951  T

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Target: chr1; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 70 - 253
Target Start/End: Original strand, 41958351 - 41958537
Alignment:
Q  70 gttcaaagttccctaaatgttttttggctttatgttacttgggttatttgaaaggaacttaac----gtatttttcagaggaaggaggataacttacatg 165  Q
    |||||||  |||||||||||| ||||| ||| |||| ||||  |||||  |||||||| ||||    ||||||||||||| |||||||| |||||||| |    
T  41958351 gttcaaaactccctaaatgttatttggttttgtgttgcttgaattattcaaaaggaacgtaacaaacgtatttttcagagaaaggaggacaacttacagg 41958450  T
Q  166 ctctttgtgaaagggtaaaactttagtcatattggtggtttaagtcaaaatatgttttatttgactttgactatcaattatggaggct 253  Q
     ||||||||||||| |||| ||||||||||||||||||||||||| |||| ||||||||||  ||||| |||||||||||||||||||    
T  41958451 atctttgtgaaaggataaagctttagtcatattggtggtttaagt-aaaaaatgttttattccactttcactatcaattatggaggct 41958537  T

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Target: chr1; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 79 - 258
Target Start/End: Original strand, 38037442 - 38037625
Alignment:
Q  79 tccctaaatgttttttggctttatgttacttgggttatttgaaaggaacttaac----gtatttttcagaggaaggaggataacttacatgctctttgtg 174  Q
    |||||||||||| ||||||||| ||||  ||||  ||||||||| || | ||||    |||||||||||   |||||||| ||||| || |  || ||||    
T  38037442 tccctaaatgttatttggctttctgttgtttggactatttgaaaagagcgtaacagttgtatttttcagcaaaaggaggaaaacttgcaggtcctatgtg 38037541  T
Q  175 aaagggtaaaactttagtcatattggtggtttaagtcaaaatatgttttatttgactttgactatcaattatggaggctaaatc 258  Q
    ||| ||| || ||| |||||||||| ||||||||||| ||||||||||| || || ||||| || |||||||||||| ||||||    
T  38037542 aaaaggtgaagcttcagtcatattgatggtttaagtcgaaatatgttttgttcgattttgattaccaattatggaggttaaatc 38037625  T

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Target: chr5 (Bit Score: 86; Significance: 4e-41; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 72 - 258
Target Start/End: Original strand, 26133512 - 26133702
Alignment:
Q  72 tcaaagttccctaaatgttttttggctttatgttacttgggttatttgaaaggaacttaac----gtatttttcagaggaaggaggataacttacatgct 167  Q
    |||||| | ||||||| || ||||||| | |||| ||||| ||||||| ||||||| ||||    |||||||||| |||||||||||||| ||||| |||    
T  26133512 tcaaagcttcctaaatattatttggctgtctgttgcttggattatttggaaggaacgtaacaaacgtatttttcaaaggaaggaggataatttacaggct 26133611  T
Q  168 ctttgtgaaagggtaaaactttagtcatattggtggtttaagtcaaaatatgttttatttgactttgactatcaattatggaggctaaatc 258  Q
    |||||  |||||||||| ||| |||| ||||||||||||||||| |||||||||||||| ||||||||||||||| | |||||||||||||    
T  26133612 ctttgcaaaagggtaaagcttcagtcgtattggtggtttaagtcgaaatatgttttattcgactttgactatcaactgtggaggctaaatc 26133702  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 165 - 252
Target Start/End: Complemental strand, 26689258 - 26689170
Alignment:
Q  165 gctctttgtgaaagggtaaaactttagtcatattggtggtttaagtc-aaaatatgttttatttgactttgactatcaattatggaggc 252  Q
    ||||||||||||||||| || ||| || | ||||||||||||||||| |||||||||||||||||| ||||| || ||| || ||||||    
T  26689258 gctctttgtgaaagggtgaagcttcagacttattggtggtttaagtcgaaaatatgttttatttgattttgagtaccaactacggaggc 26689170  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 165 - 252
Target Start/End: Complemental strand, 26958989 - 26958901
Alignment:
Q  165 gctctttgtgaaagggtaaaactttagtcatattggtggtttaagtc-aaaatatgttttatttgactttgactatcaattatggaggc 252  Q
    ||||||||||||||||| || ||| || | ||||||||||||||||| |||||||||||||||||| ||||| || ||| || ||||||    
T  26958989 gctctttgtgaaagggtgaagcttcagacttattggtggtttaagtcgaaaatatgttttatttgattttgagtaccaactacggaggc 26958901  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 258
Target Start/End: Complemental strand, 36268404 - 36268343
Alignment:
Q  197 ttggtggtttaagtcaaaatatgttttatttgactttgactatcaattatggaggctaaatc 258  Q
    |||||||||||||||||||||||||||||| |||||||| || ||| |||| ||||| ||||    
T  36268404 ttggtggtttaagtcaaaatatgttttattcgactttgattaccaactatgaaggcttaatc 36268343  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 171 - 258
Target Start/End: Original strand, 25454201 - 25454288
Alignment:
Q  171 tgtgaaagggtaaaactttagtcatattggtggtttaagtcaaaatatgttttatttgactttgactatcaattatggaggctaaatc 258  Q
    ||||||||||| || ||| | |||||||| |||||||| || ||||| ||  | ||||||||||| || |||||||||||| ||||||    
T  25454201 tgtgaaagggtcaagcttcaatcatattgatggtttaaatcgaaataagtcatgtttgactttgattaccaattatggaggttaaatc 25454288  T

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Target: chr3 (Bit Score: 77; Significance: 8e-36; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 134 - 258
Target Start/End: Original strand, 6821072 - 6821196
Alignment:
Q  134 tatttttcagaggaaggaggataacttacatgctctttgtgaaagggtaaaactttagtcatattggtggtttaagtcaaaatatgttttatttgacttt 233  Q
    ||||||| ||||||||||||| |||||||||||||||||||||| ||| |||||| |||| ||||||||||| ||||  |||||||||||||| ||||||    
T  6821072 tattttttagaggaaggaggacaacttacatgctctttgtgaaaaggtgaaacttcagtcgtattggtggttcaagttgaaatatgttttattcgacttt 6821171  T
Q  234 gactatcaattatggaggctaaatc 258  Q
    |||| ||||| ||||||||||||||    
T  6821172 gactgtcaatcatggaggctaaatc 6821196  T

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Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 165 - 258
Target Start/End: Complemental strand, 7129367 - 7129275
Alignment:
Q  165 gctctttgtgaaagggtaaaactttagtcatattggtggtttaagtcaaaatatgttttatttgactttgactatcaattatggaggctaaatc 258  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||| |||||||| || ||||| |||||||| ||||    
T  7129367 gctctttgtgaaagggtaaaacttt-gtcgtattggtggtttaagtcgaaatatgttttattcgactttgattaccaattctggaggcttaatc 7129275  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 193 - 226
Target Start/End: Complemental strand, 2902742 - 2902709
Alignment:
Q  193 catattggtggtttaagtcaaaatatgttttatt 226  Q
    |||||||||||||||| |||||||||||||||||    
T  2902742 catattggtggtttaaatcaaaatatgttttatt 2902709  T

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Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 166 - 258
Target Start/End: Original strand, 1073301 - 1073393
Alignment:
Q  166 ctctttgtgaaagggtaaaactttagtcatattggtggtttaagtcaaaatatgttttatttgactttgactatcaattatggaggctaaatc 258  Q
    ||||||||||||||||| | |||  |||||||||||||||| ||||||| |||||||||||  | |||||||| |||||||||||||||||||    
T  1073301 ctctttgtgaaagggtatagcttcggtcatattggtggtttgagtcaaagtatgttttattcaattttgactaccaattatggaggctaaatc 1073393  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 134 - 222
Target Start/End: Original strand, 396473 - 396561
Alignment:
Q  134 tatttttcagaggaaggaggataacttacatgctctttgtgaaagggtaaaactttagtcatattggtggtttaagtcaaaatatgttt 222  Q
    ||||||||||||||||||||| |  || || ||||||| ||||||||| || ||| | |||||||| ||||||||||||||||||||||    
T  396473 tatttttcagaggaaggaggaaactttgcaggctctttatgaaagggtgaagcttcaatcatattgatggtttaagtcaaaatatgttt 396561  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 195 - 258
Target Start/End: Complemental strand, 21050249 - 21050186
Alignment:
Q  195 tattggtggtttaagtcaaaatatgttttatttgactttgactatcaattatggaggctaaatc 258  Q
    ||||||||||||||||| |||||||||||| | || ||||| |||||||||||||||| |||||    
T  21050249 tattggtggtttaagtcgaaatatgttttactcgattttgaatatcaattatggaggcaaaatc 21050186  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 147 - 242
Target Start/End: Original strand, 43345656 - 43345751
Alignment:
Q  147 aaggaggataacttacatgctctttgtgaaagggtaaaactttagtcatattggtggtttaagtcaaaatatgttttatttgactttgactatcaa 242  Q
    |||||||||||||| || || ||| ||||||| || || ||| |||||| ||||||||| || |||||||| |||   ||||| ||||||||||||    
T  43345656 aaggaggataacttgcaagcgcttggtgaaagagtgaagcttcagtcattttggtggttgaaatcaaaataagttaattttgattttgactatcaa 43345751  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 251
Target Start/End: Complemental strand, 12343410 - 12343331
Alignment:
Q  172 gtgaaagggtaaaactttagtcatattggtggtttaagtcaaaatatgttttatttgactttgactatcaattatggagg 251  Q
    |||||||||| |||||||||| ||||||||| |||||  | ||||| ||||| || |||||||| || ||||||||||||    
T  12343410 gtgaaagggttaaactttagttatattggtgatttaaagcgaaataagttttgttcgactttgattaccaattatggagg 12343331  T

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