View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8952_low_49 (Length: 248)
Name: NF8952_low_49
Description: NF8952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8952_low_49 |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 54006178 - 54005942
Alignment:
| Q |
1 |
gtgtgtctcttttatttagtgtaaccaaattctttaatgttcctactccaaatttaaggtgatactaatgttagagcaatcccaagcttaagatactacc |
100 |
Q |
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| T |
54006178 |
gtgtgtcccttttatttagtgtaaccaaattctttaatgttcctactccaaatttaaggtgatactaatgttagagcaatcccaagcttaagacactacc |
54006079 |
T |
|
| Q |
101 |
aaaacaaagaaaataaatattctacctaactct----aggataaatacctaaaaagacttataacgtggtttgtcactgaaagaaaacagaaagaattta |
196 |
Q |
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||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||| ||||||||||| |||| |||||||||| |||||| |
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| T |
54006078 |
aaaacaaagaaaataaagtttctacctaactctaaagaggataaatacctaaaaaggcttataatgtggtttgtcatcgaaaaaaaacagaaaaaattta |
54005979 |
T |
|
| Q |
197 |
aacataaaagaggattaacaacgaataatgatataca |
233 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
54005978 |
aacataaaagaggattaacaacgaataatgatataca |
54005942 |
T |
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