View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8952_low_5 (Length: 747)
Name: NF8952_low_5
Description: NF8952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8952_low_5 |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 694; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 694; E-Value: 0
Query Start/End: Original strand, 13 - 730
Target Start/End: Original strand, 39951129 - 39951846
Alignment:
| Q |
13 |
gataatactgttaagataattagttgattctccatcaagagaaacaacatcgccgttcaagtcaataactttgtcacaagctgccagaattatttcagaa |
112 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39951129 |
gataatactgttaagataattagttgattctccatcaagagcaacaacatcgccgttcaagtcaataactttgtcacaagctgccagaattatttcagaa |
39951228 |
T |
|
| Q |
113 |
gcacctttgcaatgagctcttaaacttccatcaggttgctccacaactactcccattcttttcttctcagagttgaatggctcaactttaacaattttgc |
212 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39951229 |
gcacctttgcaatgagctcttacacttccatcaggttgctccacaactactcccattcttttcttctcagagttgaatggctcaactttaacaattttgc |
39951328 |
T |
|
| Q |
213 |
aagcttctctctcagccttagaatctccgcctagtgacaaaccaaattctaatattgctgtttcggttggtgtccccaatatctcacgtttgcctttttt |
312 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
39951329 |
aagcttctctctcagccttagaatctccacctagtgacaaaccaaattctaatattgctgtttcggttggtgtccccaatatctcgcgtttgcctttttt |
39951428 |
T |
|
| Q |
313 |
gttatacacaacctcgcctccagtgttattaaatatcgactgtagcaacaatttcgcagcagaatctggtatgtcagacgacgaactagaattgctaact |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39951429 |
gttatacacaacctcgcctccagtgttattaaatatcgactgtagcaacaatttcgcagcagaatctggtatgtcagacgacgaactagaattgctaact |
39951528 |
T |
|
| Q |
413 |
tctttgctattcatacaaatgcatgttttcacaaccgtcattcggttggttgttagtgtaccggttttgtcactacatatagttgttgctgatcccatag |
512 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
39951529 |
tctttgctattcatacaaatgcatgttttcacaaccgtcattcggttggttgttagtgtaccggttttgtcgctacatatagttgttgctgatcccatag |
39951628 |
T |
|
| Q |
513 |
tttcacaagctgctaaatgcctaaccaaggctttatcattcatcattttcttcattgcaaatgcaagactcaatgttacagctaatggtaaaccctcggg |
612 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39951629 |
tttcacaagctgctaaatgcctaaccaaggctttatcattcatcattttcttcattgcaaatgcaagactcaatgttacagctaatggtaaaccctcggg |
39951728 |
T |
|
| Q |
613 |
aacagcaacgacgacgattgtaaccgcaatagcaaagtattccaacatctccattgcatcgtcaccagtccatctccagaagtttccttctcggattttg |
712 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
39951729 |
aacagcaacgacgacgattgtaaccgcaatagcaaagtattccaacatctccattgcattgtcaccagtccatctccagaagtttccttctcggattttg |
39951828 |
T |
|
| Q |
713 |
tggctcaagtgtccttta |
730 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
39951829 |
tggctcaagtgtccttta |
39951846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 546 - 651
Target Start/End: Complemental strand, 1624942 - 1624837
Alignment:
| Q |
546 |
tatcattcatcattttcttcattgcaaatgcaagactcaatgttacagctaatggtaaaccctcgggaacagcaacgacgacgattgtaaccgcaatagc |
645 |
Q |
| |
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|||||||||| | ||| ||||||||||| |||||||| | |||||||||||| ||||| || || |||| ||||| || | || || ||||||||||| |
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| T |
1624942 |
tatcattcattaattttttcattgcaaaagcaagactaagtgttacagctaacggtaatccttcaggaatcgcaacaactattatagttaccgcaatagc |
1624843 |
T |
|
| Q |
646 |
aaagta |
651 |
Q |
| |
|
|||||| |
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|
| T |
1624842 |
aaagta |
1624837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 545 - 624
Target Start/End: Complemental strand, 14589833 - 14589754
Alignment:
| Q |
545 |
ttatcattcatcattttcttcattgcaaatgcaagactcaatgttacagctaatggtaaaccctcgggaacagcaacgac |
624 |
Q |
| |
|
||||||||||||| ||||||||| || || |||||||| | ||| || ||||| || |||||||| ||||| |||||||| |
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|
| T |
14589833 |
ttatcattcatcaatttcttcatcgcgaacgcaagacttagtgtaactgctaaaggcaaaccctcaggaaccgcaacgac |
14589754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 546 - 603
Target Start/End: Complemental strand, 1610557 - 1610500
Alignment:
| Q |
546 |
tatcattcatcattttcttcattgcaaatgcaagactcaatgttacagctaatggtaa |
603 |
Q |
| |
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|||||||||| | ||| ||||||||||| |||||||| | |||||||||||| ||||| |
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| T |
1610557 |
tatcattcattaattttttcattgcaaaagcaagactaagtgttacagctaacggtaa |
1610500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 26 - 697
Target Start/End: Complemental strand, 5419636 - 5418959
Alignment:
| Q |
26 |
agataattagttgattctccatcaagagaaacaacatcgccgttcaagtcaataactttgtcacaagctgccagaattatttcagaagcacctttgcaat |
125 |
Q |
| |
|
|||| ||||||||||||| ||||||| | ||||| |||||||| | | | ||||||||||||||| || |||| |||||||||||||||||| || | |
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| T |
5419636 |
agatgattagttgattcttcatcaagtgggacaacctcgccgtttgaattgagaactttgtcacaagcagcaagaactatttcagaagcacctttacagt |
5419537 |
T |
|
| Q |
126 |
gagctcttaaacttccatcaggttgctccacaactactcccattcttttcttctcagagttgaatggctcaactttaacaattttgcaagcttctctctc |
225 |
Q |
| |
|
|||||||||||| |||| ||| ||||||| ||| | |||||||||||||| ||||||||| |||||||||||||||| |||||| |||| |||||| |
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| T |
5419536 |
gagctcttaaacctccactagggagctccaccactgcacccattcttttcttagtagagttgaacggctcaactttaacaagtttgcatgcttgtctctc |
5419437 |
T |
|
| Q |
226 |
agccttagaatctccgcctagtgacaaaccaaattctaatattgctgtttcggttggtgtccccaatatctcacgtttgccttttttgttatacacaacc |
325 |
Q |
| |
|
| | | |||| || |||| ||| || ||||| || |||||||| || |||||||||||||| || ||||| |||| |||| ||||||| ||||||| |
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| T |
5419436 |
tccttgaaaatcaccacctaatgataatccaaactccaatattgcagtctcggttggtgtccctaaaatctcgtgtttcccttgtttgttaaccacaacc |
5419337 |
T |
|
| Q |
326 |
tcgcctccagtgttattaaatatcgactgtagcaacaatttcgcagcagaatctggtatgtcagacgacgaactagaa------ttgctaacttctttgc |
419 |
Q |
| |
|
|| ||||||||||| |||||||| |||||| ||| || |||| || |||| ||||| | ||||| || |||||||| ||||| || || |||| |
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|
| T |
5419336 |
tctcctccagtgttgttaaatattgactgttgcagcagtttcacaacagattctgggagttcagagcacaaactagaagttttgttgcttacctccttgc |
5419237 |
T |
|
| Q |
420 |
tattcatacaaatgcatgttttcacaaccgtcattcggttggttgttagtgtaccggttttgtcactacatatagttgttgctgatcccatagtttcaca |
519 |
Q |
| |
|
| ||||| |||||||||||||||||||| ||||| | |||||||||||||| || ||||||||||||||||||||||| ||||||||||| || ||||| |
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|
| T |
5419236 |
ttttcatgcaaatgcatgttttcacaacagtcatgtgattggttgttagtgtcccagttttgtcactacatatagttgtggctgatcccattgtctcaca |
5419137 |
T |
|
| Q |
520 |
agctgctaaatgcctaaccaaggctttatcattcatcattttcttcattgcaaatgcaagactcaatgttacagctaatggtaaaccctcgggaacagca |
619 |
Q |
| |
|
|||||| |||| | || | ||| || |||||||||||||| ||||| ||||||||||| |||||||| ||||||||||| | || || ||||||||| |
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|
| T |
5419136 |
agctgccaaatttcggacaagggccttgtcattcatcatttttttcatagcaaatgcaaggctcaatgtcacagctaatggaagcccttctggaacagca |
5419037 |
T |
|
| Q |
620 |
acgacgacgattgtaaccgcaatagcaaagtattccaacatctccattgcatcgtcaccagtccatctccagaagttt |
697 |
Q |
| |
|
|| || ||||| ||||| ||||| |||||||| ||||||||||||| ||||| || ||| |||| ||||||||||| |
|
|
| T |
5419036 |
acaacaacgatggtaactgcaatcgcaaagtactccaacatctccaaagcatcatccccattccagttccagaagttt |
5418959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 6e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 479 - 690
Target Start/End: Complemental strand, 47487663 - 47487452
Alignment:
| Q |
479 |
ttgtcactacatatagttgttgctgatcccatagtttcacaagctgctaaatgcctaaccaaggctttatcattcatcattttcttcattgcaaatgcaa |
578 |
Q |
| |
|
|||||||| || ||||| || || |||||||| || |||||||| || ||||| | || | || |||||||||||||| || ||||| ||||| |||| |
|
|
| T |
47487663 |
ttgtcactgcagatagtagtagcagatcccattgtctcacaagcagccaaatgacggacgagtgccttatcattcatcatctttttcatggcaaaagcaa |
47487564 |
T |
|
| Q |
579 |
gactcaatgttacagctaatggtaaaccctcgggaacagcaacgacgacgattgtaaccgcaatagcaaagtattccaacatctccattgcatcgtcacc |
678 |
Q |
| |
|
| |||||||| |||||||| |||||||| || ||||||||||| || || |||||||| |||||||||||| |||||| || ||||||||||| ||||| |
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| T |
47487563 |
ggctcaatgtcacagctaaaggtaaaccttcaggaacagcaacaacaacaattgtaacagcaatagcaaagaattccacaatttccattgcatcatcacc |
47487464 |
T |
|
| Q |
679 |
agtccatctcca |
690 |
Q |
| |
|
|| |||| |||| |
|
|
| T |
47487463 |
agaccatgtcca |
47487452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 553 - 636
Target Start/End: Original strand, 4243444 - 4243527
Alignment:
| Q |
553 |
catcattttcttcattgcaaatgcaagactcaatgttacagctaatggtaaaccctcgggaacagcaacgacgacgattgtaac |
636 |
Q |
| |
|
||||||||||||||||| | | || || ||||||| ||||||||||||||||||||||| | |||||| ||||| || ||||| |
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|
| T |
4243444 |
catcattttcttcattgaataagcgagtgtcaatgtcacagctaatggtaaaccctcggggatagcaacaacgacaatagtaac |
4243527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 553 - 614
Target Start/End: Original strand, 6186500 - 6186561
Alignment:
| Q |
553 |
catcattttcttcattgcaaatgcaagactcaatgttacagctaatggtaaaccctcgggaa |
614 |
Q |
| |
|
||||||||||||||||| | ||||||| ||||||| ||||||||||| |||||||| |||| |
|
|
| T |
6186500 |
catcattttcttcattgaatatgcaagtgtcaatgtcacagctaatggcaaaccctcaggaa |
6186561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 545 - 624
Target Start/End: Original strand, 227545 - 227624
Alignment:
| Q |
545 |
ttatcattcatcattttcttcattgcaaatgcaagactcaatgttacagctaatggtaaaccctcgggaacagcaacgac |
624 |
Q |
| |
|
||||||||||||| ||||||||| || || |||||||| | ||| || ||||| || |||||||| ||||| |||||||| |
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|
| T |
227545 |
ttatcattcatcaatttcttcatcgcgaacgcaagacttagtgtaactgctaaaggcaaaccctcaggaaccgcaacgac |
227624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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